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https://www.proteomicsdb.org/

Database for the identification of the human proteome and its use across the scientific community. Users can browse proteins and chromosomes and contribute to the data repository.

Proper citation: ProteomicsDB (RRID:SCR_015562) Copy   

•   Source: SciCrunch Registry

http://severus.dbmi.pitt.edu/schizo-pi/

An interactome of protein-protein interactions related to schizophrenia, it contains novel PPIs predicted with the HiPPIP model. Schizophrenia associated genes are gathered from GWAS genes, historical candidates, and OMIM. Members of the scientific community can also suggest genes to add to the interactome.

Proper citation: Schizo-Pi (RRID:SCR_014599) Copy   

•   Source: SciCrunch Registry

http://www.metabolomicsworkbench.org/data/metabolitedatabase.php

A database which contains structures and annotations of biologically relevant metabolites from public repositories such as LIPID MAPS, ChEBI, HMDB, PubChem, and KEGG. Users can search for molecular structure based on substructure, text, or mass.

Proper citation: Metabolomics Workbench Metabolite Database (RRID:SCR_014633) Copy   

•   Source: SciCrunch Registry

https://www.foodrepo.org

Database of barcoded food products. Food Repo provides data that is on the package of each product, and collects its data via food distributors and volunteer contributors.

Proper citation: Food Repo (RRID:SCR_016097) Copy   

•   Source: SciCrunch Registry

http://findlab.stanford.edu/functional_ROIs.html

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on June 29,2023. Atlas of functional ROIs (fROIs) containing 499 regions, with extensive gray matter coverage. Atlases are available for download directly from the website.

Proper citation: 499 fROI atlas (RRID:SCR_014756) Copy   

•   Source: SciCrunch Registry

http://teachingcommons.us/#annotations:TY4psokJEeaXOivKaAz4RA

A library of open source teaching and educational resources for professors and students. It includes resources such as textbooks, lesson plans, multimedia, and lectures from participating universities and institutions. Subject areas include the life sciences, the arts and humanities, law, social and behavioral sciences, medicine and health, engineering, education, the physical sciences, and mathematics. Users can share their own work and adopt others' on the platform.

Proper citation: Teaching Commons (RRID:SCR_014638) Copy   

•   Source: SciCrunch Registry

http://clonesearch.jdrfnpod.org/

Database of sequence data generated from high-throughput immunosequencing of the TCR beta chain (TRB) and B cell receptor (BCR) immunoglobulin heavy chain (IGH). This data comes from cells from NPOD donors.

Proper citation: nPOD TCR/BCR Search (RRID:SCR_015851) Copy   

•   Source: SciCrunch Registry

https://www.immunobase.org/about/

Web based resource focused on the genetics and genomics of immunologically related human diseases. Their mission is to provide a curated and integrated set of datasets and tools to support and promote research in this area. The current focus of the site is to integrate and curate summary case/control association statistics from the consortium of 12 diseases originally targeted by the ImmunoChip consortium.

Proper citation: ImmunoBase (RRID:SCR_014642) Copy   

•   Source: SciCrunch Registry

http://www.diabetesbiobank.org

Non-profit initiative of the Belgian Diabetes Registry (BDR), the Beta Cell Therapy consortium (BCT), the Flemish Center for Medical Innovation (CMI) and the Brussels Institute for Research and Innovation (Innoviris). It aims to support medical research into the epidemiology, prevention, diagnosis and treatment of diabetes.

Proper citation: Diabetes Biobank Brussels (RRID:SCR_015571) Copy   

•   Source: SciCrunch Registry

http://mona.fiehnlab.ucdavis.edu

Metadata-centric, auto-curating repository designed for storage and querying of mass spectral records. It contains metabolite mass spectra, metadata and associated compounds.

Proper citation: MassBank of North America (RRID:SCR_015536) Copy   

•   Source: SciCrunch Registry

http://metabolomics.pharm.uconn.edu/iimdb/

Database of known biochemical compounds collected from existing biochemical databases, as well as computationally generated human phase I and phase II metabolites of known compounds.

Proper citation: In vivo - In silico Metabolite Database (RRID:SCR_015537) Copy   

•   Source: SciCrunch Registry

https://www.clinicalgenome.org

Genomics knowledgebase for clinical relevance of genes and variants for use in research. ClinGen's primary function is to store and share information for the benefit of the scientific community. Laboratory scientists, clinicians, and patients can share and access data.

Proper citation: ClinGen (RRID:SCR_014968) Copy   

•   Source: SciCrunch Registry

http://rarediseases.org/for-patients-and-families/information-resources/rare-disease-information/

A database which provides brief introductions of rare diseases. New topics and diseases are added with the help of rare disease medical experts. This is mainly targeted at patients and their families but has useful information for professionals.

Proper citation: NORD Rare Disease Database (RRID:SCR_014573) Copy   

•   Source: SciCrunch Registry

http://krebs.iab.keio.ac.jp/HERMIT1/app/NichoAnu/

Metabolic pathway map that collects metabolic data gathered from multiple public databases and organizes them in one central location.

Proper citation: Ultimate Rough Aggregation of Metabolic Map (RRID:SCR_014694) Copy   

•   Source: SciCrunch Registry

https://senselab.med.yale.edu/MicroCircuitDB/

A database for storing and efficiently retrieving realistic computational models of brain microcircuits and networks. The focus is on microcircuits that are based on experimentally demonstrated properties of neurons and their connectivity.

Proper citation: MicrocircuitDB (RRID:SCR_014577) Copy   

•   Source: SciCrunch Registry

https://repod.pon.edu.pl/#annotations:cE6FdKHvEeaGt1e4NLwMyg

An online platform for open source data/datasets created, collected or annotated for scientific research of all fields and disciplines. Registered users can share data relating to their research project and view data from other projects. Groups can combine datasets into collections associated with the group, in contrast to individual members of the group hosting their own data.

Proper citation: RepOD (RRID:SCR_014697) Copy   

•   Source: SciCrunch Registry

https://figshare.com/articles/phi_toolbox_zip/3203326

Toolkit of MATLAB functions for computing integrated information ('phi' or 'Φ') from neural data. The toolbox consists of downloadable codes that perform practical computation.

Proper citation: Phi Toolbox (RRID:SCR_015549) Copy   

•   Source: SciCrunch Registry

http://bioconductor.org/packages/EGSEA/

Method developed for RNA-sequencing data. EGSEA combines results from twelve algorithms and calculates collective gene set scores to improve the biological relevance of the highest ranked gene sets.

Proper citation: EGSEA (RRID:SCR_015036) Copy   

•   Source: SciCrunch Registry

https://astrocyte.rnaseq.sofroniewlab.neurobio.ucla.edu

Database containing information about RNA-sequencing and astrocyte reactivity. Searching a gene through this engine provides differential expression data for various experimental conditions.

Proper citation: Astrocyte Reactivity RNA-Seq Browser (RRID:SCR_015033) Copy   

•   Source: SciCrunch Registry

http://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMSEARCH

Source code for EMBOSS commands to search for protein domains. Its functions include removing redundant and fragment sequences from DHF files, generating PSI-BLAST hits (DHF file) from a DAF file, removing ambiguous classified sequences from DHF files, and generating DHF files from keyword search of UniProt.

Proper citation: Embassy-domsearch (RRID:SCR_016086) Copy   

•   Source: SciCrunch Registry