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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
NIH Brics Resource Report Resource Website |
NIH Brics (RRID:SCR_015028) | BRICS | software resource, web application | Modular, web-based bioinformatics system for research studies and clinical trials data collection. Tools include a data dictionary, data repository, meta study, global unique identifiers for studies, protocol management and data capture, and query and exportation of data. | bioinformatics platform, data collection, bioinformatics tool | Available to the scientific community | SCR_015028 | Biomedical Research Informatics Computing System (BRICS), Biomedical Research Informatics Computing System | 2026-08-29 11:24:55 | 0 | |||||||||
|
International Image Interoperability Framework Resource Report Resource Website |
International Image Interoperability Framework (RRID:SCR_015029) | IIIF | collaboration tool, software application, software resource, systems interoperability software | Set of shared application programming interface specifications for interoperable functionality in digital image repositories. It utilizes JSON-LD, linked data, and standard W3C web protocols to parse and share digital image data, migrate across technology systems, and provide enhanced image access. | interoperability, framework, consortium, image delivery, image sharing, image community | Available to the scientific community | SCR_015029 | International Image Interoperability Framework (IIIF) | 2026-08-29 11:24:56 | 0 | |||||||||
|
GapCloser Resource Report Resource Website 500+ mentions |
GapCloser (RRID:SCR_015026) | data analysis software, data processing software, sequence analysis software, software application, software resource, source code | Module of SOAPdenovo2 commonly used independently to close gaps in genome assemblies. | gap closure, genome assembly, sequence | is listed by: SOAP | PMID:23587118 | Free, Available for download | SCR_015026 | 2026-08-29 11:25:08 | 739 | |||||||||
|
Group Sparse Canonical Correlation Analysis Resource Report Resource Website |
Group Sparse Canonical Correlation Analysis (RRID:SCR_014977) | GSCCA | data analysis software, data processing software, software application, software resource | Group Sparse Canonical Correlation Analysis is a method designed to study the mutual relationship between two different types of data. | group analysis, correlation analysis | has parent organization: NeuroImaging Tools and Resources Collaboratory (NITRC) | NSF ; NIH |
Available for download | SCR_014977 | 2026-08-29 11:24:55 | 0 | ||||||||
|
Drososhare Resource Report Resource Website 1+ mentions |
Drososhare (RRID:SCR_014976) | biomaterial supply resource, material resource, organism supplier | Website resource for researchers to order and send Drosophilia specimens to each other. This community-driven supplier also works with the FlyBase Drosophilia database to search for synonyms for fly species. | community driven, organism supplier, community building portal, drosophila, fly, specimen | uses: FlyBase | Available to the research community | SCR_014976 | Drososhare GmbH | 2026-08-29 11:24:54 | 1 | |||||||||
|
KaleidaGraph Resource Report Resource Website 1000+ mentions |
KaleidaGraph (RRID:SCR_014980) | data analysis software, data processing software, data visualization software, software application, software resource | Data analysis, graphing, and management application that allows users to import, manipulate, analyze data, and create customized plots. Plots include x-y probability, histogram, box, percentile, horizontal bar, stack bar, column, stack column, polar, and pie. Binned data can be exported to a histogram, step plot, or spike plot. KaleidaGraph works with Windows and Macintosh systems., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | custom graph, custom plot, publishable graph, publishable plot, data manipulation, curve fitting | is listed by: SoftCite | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_014980 | 2026-08-29 11:24:55 | 2789 | ||||||||||
|
ALD Connect Resource Report Resource Website 1+ mentions |
ALD Connect (RRID:SCR_015035) | data or information resource, disease-related portal, group, portal, topical portal | Group whose goal is to improve health outcomes for individuals with X-linked adrenoleukodystrophy by raising disease awareness, improving education, providing support for and information to patients, and performing clinical ALD research. | ald netowrk, disease network, genetic disease network, patient resource | X-linked adrenoleukodystrophy | Public | SCR_015035 | 2026-08-29 11:24:56 | 1 | ||||||||||
|
ICASSO Resource Report Resource Website 10+ mentions |
ICASSO (RRID:SCR_014981) | algorithm resource, data processing software, data visualization software, software application, software resource | Software implementing a method for assessing both the algorithmic and statistical reliability of estimated independent components developed by Himburg et al in their 2004 paper. The method is based on running the ICA algorithm many times with slightly different conditions and visualizing the clustering structure of the obtained components in the signal space. In experiments with magnetoencephalographic (MEG) and functional magnetic resonance imaging (fMRI) data, the method was able to show that expected components are reliable; furthermore, it pointed out components whose interpretation was not obvious but whose reliability should incite the experimenter to investigate the underlying technical or physical phenomena. | independent component analysis, ica, ica estimate, visualization method, tight cluster |
uses: FastICA uses: MATLAB |
Academy of Finland ; Nokia Foundation |
PMID:15219593 | Available for download | SCR_014981 | Icasso 1.2, Icasso | 2026-08-29 11:24:55 | 43 | |||||||
|
Osteogenesis Imperfecta Foundation Resource Report Resource Website 1+ mentions |
Osteogenesis Imperfecta Foundation (RRID:SCR_015034) | OIF | institution | Foundation for improving the quality of life for people affected by OI through treatment and cure research, education, awareness, and mutual support. OIF lists personal resources for individuals affected by osteogenesis imperfecta as well as professional and clinical resources for researchers. | osteogenesis imperfecta, bone disease, brittle bone, patient support, cure research | Osteogenesis imperfecta | U.S. Combined Federal Campaign ; Medical Research Charities ; National Health Council ; NORD ; PAG ; Rare Clinical Diseases Research Network |
Public | grid.423291.f, ISNI: 0000 0000 9148 0660, Crossref funder ID: 100003227 | https://ror.org/05a6emh10 | SCR_015034 | Osteogenesis Imperfecta Foundation (OIF) | 2026-08-29 11:24:55 | 1 | |||||
|
NaviCom Resource Report Resource Website 1+ mentions |
NaviCom (RRID:SCR_015039) | data processing software, data visualization software, software application, software resource, web application | Web application which allows users to create interactive molecular network portraits using high-throughput datasets. | python package, high throughput data visualization, molecular network |
uses: cBioPortal has parent organization: Curie Institute; Paris; France |
Open source | SCR_015039 | 2026-08-29 11:25:08 | 1 | ||||||||||
|
Northern Spalting - Applied Mycology Lab Resource Report Resource Website |
Northern Spalting - Applied Mycology Lab (RRID:SCR_014945) | biomaterial supply resource, material resource, organism supplier | Supplier of non-toxic, pure-culture fungi through Oregon State University which are kept active in the lab. All organisms arrive in an aggressive, pigmenting state. It's website also features scientific information on spalting, DIY guides, lists of upcoming spalting events, and a menagerie of other spalting resources. | spalting, wood coloring, fungi, pigmenting fungi, aggressive fungi, non toxic fungi, pure culture fungi, mushroom, malt agar | has parent organization: Oregon State University; Oregon; USA | Available to the scientific community | SCR_014945 | Applied Mycology Lab, Northern Spalting | 2026-08-29 11:24:54 | 0 | |||||||||
|
Aloha Medicinals Resource Report Resource Website |
Aloha Medicinals (RRID:SCR_014943) | biomaterial supply resource, material resource, organism supplier | Producer and supplier of organic medicinal mushrooms and medicinal mushroom products. Its product line includes raw materials and private label products for pharmaceutical and nutraceutical use, as well as its own branded line of "Condition Specific" dietary supplements available to the public. | mushroom, nutritional supplement, mycology, pharmaceutical use, nutraceutical use, medicinal mushroom, mushroom supplement | Commercially available | SCR_014943 | Aloha Medicinals Inc, Aloha Medicinals Culture Bank | 2026-08-29 11:24:54 | 0 | ||||||||||
|
Archer Farms Resource Report Resource Website 10+ mentions |
Archer Farms (RRID:SCR_014948) | biomaterial supply resource, material resource, organism supplier | Producer and supplier of swine and sheep for research purposes. Archer Farms delivers its specimens directly to research facilities throughout the East Coast. | swine supplier, sheep supplier, model mammal organism | Commercially available, Available for purchase | SCR_014948 | Archer Farms Inc. | 2026-08-29 11:24:54 | 22 | ||||||||||
|
Aquatic Research Organisms Resource Report Resource Website 1+ mentions |
Aquatic Research Organisms (RRID:SCR_014946) | ARO | biomaterial supply resource, material resource, organism supplier | Supplier of laboratory-reared and field-collected freshwater, marine, and estuarine organisms. Invertebrates and vertebrates are available, and seasonal and unlisted organisms can be requested. Its test organisms are available for environmental and biomedical research. | marine organism, freshwater organism, marine invertebrate, freshwater invertebrate, marine vertebrate, freshwater vertebrate, seasonal organism | Commercially available, Available to the scientific community | SCR_014946 | Aquatic Research Organisms Inc., Aquatic Research Organisms (ARO), Aquatic Research Organisms Inc | 2026-08-29 11:24:54 | 1 | |||||||||
|
CDC Laboratory Quality Assurance and Standardization Programs Resource Report Resource Website 50+ mentions |
CDC Laboratory Quality Assurance and Standardization Programs (RRID:SCR_015000) | gold standard | Standardization program which helps assure the quality of laboratory test data and results so patients, healthcare providers, researchers, and public health officials can be confident that laboratory test results they receive are accurate. CDC services include reference materials, proficiency testing, training, guideline creation, and consultations. Quality assurance and standardization programs can be can be customized by and for users and laboratories. | standardization program, quality assurance, lab test data, accurate data | has parent organization: Centers for Disease Control and Prevention | Available to the research community | SCR_015000 | 2026-08-29 11:24:55 | 83 | ||||||||||
|
Bio Breeders Resource Report Resource Website |
Bio Breeders (RRID:SCR_014951) | biomaterial supply resource, material resource, organism supplier | Developer of specialized and appropriate hamster models for research on human diseases. These specialized hamsters have features similar to those seen in certain human diseases. Bio Breeders provides these specialized hamsters to the biomedical community worldwide. | hamster model, mice colony, myopathic hamster, animal test subject, rodent, hamster | Commercially available, Available to the research community | SCR_014951 | Bio Breeders Inc., Bio Breeders Inc | 2026-08-29 11:25:06 | 0 | ||||||||||
|
Pituitary Network Association Resource Report Resource Website 1+ mentions |
Pituitary Network Association (RRID:SCR_015006) | PNA | data or information resource, disease-related portal, patient-support portal, portal, topical portal | International non-profit organization for patients, relatives, and physicians with pituitary tumors and disorders. | pituitary gland, patient support, clinical trial, patient advocacy organization | Pituitary tumor, Pituitary disorder | Public | SCR_015006 | Pituitary Network Association (PNA) | 2026-08-29 11:24:56 | 1 | ||||||||
|
National Adrenal Diseases Foundation Resource Report Resource Website |
National Adrenal Diseases Foundation (RRID:SCR_015007) | NADF | data or information resource, disease-related portal, portal, topical portal | Foundation to support research in and diagnosis of adrenal diseases. The portal provides basic information about adrenal diseases as well as a community for patients. | improve treatment, improve diagnosis | SCR_015007 | 2026-08-29 11:25:07 | 0 | |||||||||||
|
pCASL Analysis Resource Report Resource Website 1+ mentions |
pCASL Analysis (RRID:SCR_015004) | data or information resource, portal, software resource, source code | Collection of analysis scripts for pCASL (pseudo-Continuous ASL) data. | pseudo-Continuous ASL, arterial spin labeling | PMID:17826940 | SCR_015004 | 2026-08-29 11:24:55 | 5 | |||||||||||
|
Johns Hopkins University - University of Maryland Diabetes Research Center Resource Report Resource Website |
Johns Hopkins University - University of Maryland Diabetes Research Center (RRID:SCR_015086) | access service resource, data or information resource, disease-related portal, portal, resource, service resource, topical portal | Center whose goal is to understand the causes of both type 1 and 2 diabetes and promotes translational research that is aimed at reducing the burden of these diseases in the U.S. It has a specific focus on childhood diabetes and diabetes that affects minority populations. | diabetes research, child diabetes, endocrinology |
is listed by: NIDDK Information Network (dkNET) has parent organization: Johns Hopkins University School of Medicine; Baltimore, Maryland; USA has parent organization: University of Maryland; Maryland; USA is parent organization of: Johns Hopkins University - University of Maryland Diabetes Research Center Health and Populations Science Core is parent organization of: Johns Hopkins University - University of Maryland Diabetes Research Center Gene Editing Core is parent organization of: Johns Hopkins University - University of Maryland Diabetes Research Center Cell Biology Core is parent organization of: Johns Hopkins University - University of Maryland Diabetes Research Center Administrative Core is parent organization of: Johns Hopkins University - University of Maryland Diabetes Research Center Molecular and Translational Genomics Core has organization facet: Johns Hopkins University - University of Maryland Diabetes Research Center Administrative Core has organization facet: Johns Hopkins University - University of Maryland Diabetes Research Center Cell Biology Core has organization facet: Johns Hopkins University - University of Maryland Diabetes Research Center Integrated Physiology Core has organization facet: Johns Hopkins University - University of Maryland Diabetes Research Center Gene Editing Core has organization facet: Johns Hopkins University - University of Maryland Diabetes Research Center Molecular and Translational Genomics Core has organization facet: Johns Hopkins University - University of Maryland Diabetes Research Center Health and Populations Science Core is organization facet of: Diabetes Research Centers |
Type 1 diabetes, Type 2 diabetes, Diabetes | NIDDK P30DK079637 | Available to the research community | SCR_015086 | 2026-08-29 11:25:09 | 0 |
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