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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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R/HAPASSOC Resource Report Resource Website |
R/HAPASSOC (RRID:SCR_009365) | software application, software resource | Software application using a likelihood approach to inference of haplotype and nongenetic effects and their interactions in generalized linear models of disease penetrance, when haplotype phase is unknown for some subjects. Parameter estimates are obtained by use of an expectation-maximization (EM) algorithm and standard errors are calculated using Louis'' formula. (entry from Genetic Analysis Software) | gene, genetic, genomic, r | is listed by: Genetic Analysis Software | nlx_154587, SCR_009219, nlx_154374 | http://stat-db.stat.sfu.ca:8080/statgen/research/hapassoc | SCR_009365 | HAPASSOC | 2026-09-05 06:32:51 | 0 | ||||||||
|
SIMULA Resource Report Resource Website 1+ mentions |
SIMULA (RRID:SCR_009390) | SIMULA | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented September 29, 2016. Simulation program that generates data sets of families for use in linkage and association studies. SIMLA_3.2 is a major upgrade to versions 2.3 and 3.0 that provides the ability to simulate two disease loci and two environmental covariates. Gene-gene and gene-environment interactions may also be simulated which jointly determine the disease risk of all pedigree members. | gene, genetic, genomic, java, r, unix, solaris, linux, ms-windows |
is listed by: Genetic Analysis Software is related to: DE-Sim |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154629 | http://www.chg.duke.edu/research/simla30.html | SCR_009390 | 2026-09-05 06:32:51 | 1 | |||||||
|
TAGSTER Resource Report Resource Website 1+ mentions |
TAGSTER (RRID:SCR_009413) | software application, software resource | Software tool to select, evaluate and visualize LD tag SNPs for single or multiple populations. The input files can be a set of dumped genotype files from International HapMap Project (http://www.hapmap.org/) (Hapmap format) or Seattle SNPs (http://pga.gs.washington.edu/) (Prettybase format). The ouput is a set of LD tag SNPs for single or multiple populations. (entry from Genetic Analysis Software) | gene, genetic, genomic, perl, r, linux, macos, ms-windows | is listed by: Genetic Analysis Software | nlx_154673 | SCR_009413 | 2026-09-05 06:32:52 | 2 | ||||||||||
|
mwtabR Resource Report Resource Website |
mwtabR (RRID:SCR_014677) | software resource, source code | An R package that downloads and parses mwtab data from Metabolomics Workbench studies. Downloaded files are converted into R lists. | statistical analysis, statistical analysis package, r, r package, metabolomics, parse | is listed by: Metabolomics Workbench | SCR_014677 | R Package for downloading and parsing mwTab files from the Metabolomics Workbench | 2026-09-05 06:33:59 | 0 | ||||||||||
|
R package: nlme Resource Report Resource Website 50+ mentions |
R package: nlme (RRID:SCR_015655) | software resource, source code | Software to fit and compare Gaussian linear and nonlinear mixed-effects models. | gaussian, mixed-effects model, r, r package | is listed by: CRAN | Free, Available for download | https://cran.r-project.org/package=nlme | SCR_015655 | 2026-09-05 06:34:08 | 62 | |||||||||
|
In-Vitro-Sholl Resource Report Resource Website |
In-Vitro-Sholl (RRID:SCR_025662) | software resource, source code | Software R analysis code for analyzing fluorescence microscopy images to determine complexity of cultured astrocytes. Sholl profile analysis based on mixed-effect models. | analyzing fluorescence microscopy images, cultured astrocytes, image, R, Sholl, Sholl profile analysis, mixed-effect models, | PMID:28104486 | Free, Available for download, Freely available, | https://github.com/adrigabzu/sholl_analysis_in_R | SCR_025662 | In vitro astrocyte sholl analysis in R | 2026-09-05 06:35:04 | 0 | ||||||||
|
ncdfFlow Resource Report Resource Website |
ncdfFlow (RRID:SCR_000009) | software resource | Software package that provides netCDF storage based methods and functions for manipulation of flow cytometry data. | software package, mac os x, unix/linux, windows, r, flow cytometry |
is listed by: OMICtools has parent organization: Bioconductor |
Free, Available for download, Freely available | OMICS_05617 | SCR_000009 | ncdfFlow: A package that provides ncdf based storage for flow cytometry data | 2026-09-07 08:55:13 | 0 |
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