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http://www.biostat.ucsf.edu/sen/rqtldesign.html
Software application to help plan quantitative trait locus (QTL) experiments. (entry from Genetic Analysis Software)
Proper citation: R/QTLDESIGN (RRID:SCR_013424) Copy
https://cran.r-project.org/web/packages/psy/index.html
Software package implementing various statistical procedures used in psychometry.
Proper citation: R package: psy (RRID:SCR_015660) Copy
http://bioconductor.org/packages/release/bioc/html/topGO.html
Software package which provides tools for testing GO terms while accounting for the topology of the GO graph. Different test statistics and different methods for eliminating local similarities and dependencies between GO terms can be implemented and applied.
Proper citation: topGO (RRID:SCR_014798) Copy
https://github.com/stanstrup/mwtabR
An R package that downloads and parses mwtab data from Metabolomics Workbench studies. Downloaded files are converted into R lists.
Proper citation: mwtabR (RRID:SCR_014677) Copy
http://CRAN.R-project.org/package=nlme
Software to fit and compare Gaussian linear and nonlinear mixed-effects models.
Proper citation: R package: nlme (RRID:SCR_015655) Copy
https://github.com/Eroglu-Lab/In-Vitro-Sholl.git
Software R analysis code for analyzing fluorescence microscopy images to determine complexity of cultured astrocytes. Sholl profile analysis based on mixed-effect models.
Proper citation: In-Vitro-Sholl (RRID:SCR_025662) Copy
http://www.bioconductor.org/packages/release/bioc/html/ncdfFlow.html
Software package that provides netCDF storage based methods and functions for manipulation of flow cytometry data.
Proper citation: ncdfFlow (RRID:SCR_000009) Copy
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