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https://edspace.american.edu/openbehavior/project/snackclock/

Project related to feeding behavior.Provides device for dispensing pre-measured quantities of food at regular intervals throughout day. Device uses 24 hour clock movement to rotate dispenser wheel one revolution per day.

Proper citation: SnackClock (RRID:SCR_021554) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/automated-home-cage-functional-imaging/

Portal provides automated system for mesoscopic functional imaging that allows subjects to self initiate head fixation and imaging within home cage. Developed by University of British Columbia scientists. System for automated head fixation within mouse home cages.

Proper citation: Automated Home-Cage Functional Imaging project (RRID:SCR_021567) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/touchscreen-cognition-mousebytes/

Project related to cognitive testing method for rodents.Provides touchscreen operant platform for testing learning and memory in rats and mice.Includes device chambers that can be used to measure rodent behavior.Not open source device.

Proper citation: Touchscreen Cognition (RRID:SCR_021550) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/acrobat/

Project related to studying motor behavior. University of Washington in Seattle scientists have developed and published their device for training rats to perform modified center out task.

Proper citation: ACRoBaT (RRID:SCR_021546) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/multichromvisstim/

Project related to visual neuroscience.Provides spatial visual stimulator with arbitrary spectrum of light for visual neuroscientists.Open source, low cost visual stimulator which can be customized with up to 6 chromatic channels. Spectrum of light can be arbitrary and customizable to be adapted to different animal models based on their visual spectrum. Device details, including parts list and information for custom python library for generating visual stimuli (QDSpy), can be found in eLife publication.

Proper citation: Visual stimulator with customizable light spectra (RRID:SCR_021545) Copy   

•   Source: SciCrunch Registry

https://wavesurfer.janelia.org/

Open source software application for neurophysiology data acquisition and analysis. Program is based in MatLab, and evolved from earlier open source software package called Ephus.

Proper citation: Wave Surfer (RRID:SCR_021529) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/dual-port-lick-detector/

Project related to measuring licking behavior in mice.System includes device used for both real time measurement and manipulation of licking behavior in head fixed mice. System provides distribution package for Dual Port Lick Detector.Package includes files relevant to building lick detector.

Proper citation: Dual port Lick Detector project (RRID:SCR_021454) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/cerebro/

Project related to wireless controlled optogenetic stimulation. Provides system for wireless optogenetic stimulation developed in Karpova Lab with ability to be customized.Features Cerebro,rechargeable, battery powered wireless receiver;head implant containing optical fibers and two independent laser diodes; base station for transmitting radio signals to Cerebro, controlled by Windows computer via USB or by TTL; charging dock; and Xavier, user friendly GUI for sending and logging base station commands.

Proper citation: Cerebro Wireless Optogenetic System project (RRID:SCR_021474) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/4-port-nose-poke/

Portal provides open source nose poke system utilizing Arduino microcontroller, several low cost electronic components, and PVC behavioral arena. System developed by University of Basel scientists for use in behavior experiments.

Proper citation: 4 Port Nose Poke (RRID:SCR_021592) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/open-source-platform-sensory-tasks/

Project related to report animal decision in response to stimulus.Includes software tool as Arduino and Python based platform for Go or No Go sensory task to report animal decision in response to stimulus provided by University of Melbourne, Melbourne, VIC, Australia scientists.

Proper citation: Open Source platform for Sensory Tasks project (RRID:SCR_021468) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/deepethogram/

Software tool to extract relevant features from images and use time series of these features to classify whether given behavior is present in each frame of video recording.machine learning pipeline for supervised behavior classification from raw pixels. Performs action recognition ,automated behavior classification, over frames. Used for automated behavior classification to detect and track behavior over time.

Proper citation: DeepEthogram (RRID:SCR_022355) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/mri-compatible-microdrive/

MRI compatible microdrive that can precisely position electrodes without causing significant imaging artifacts.

Proper citation: MRI Compatible Microdrive (RRID:SCR_022352) Copy   

•   Source: SciCrunch Registry

https://github.com/SunGL001/DeepBhvTracking

Software tool as novel tracking algorithm that combines deep learning and background subtraction.

Proper citation: DeepBhvTracking (RRID:SCR_022351) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/neonatal-stereotax/

3D printed device for stereotaxic viral delivery into brains of neonatal mice.Used for stable and precise stereotaxic surgery in neonatal mice.

Proper citation: Neonatal Stereotaxic Mouse Adaptor (RRID:SCR_022349) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/neuroethology-tools/

Software Matlab based tool to visualize and analyze multimodal datasets.

Proper citation: Behavior Ensemble and Neural Trajectory Observatory (RRID:SCR_022348) Copy   

•   Source: SciCrunch Registry

https://github.com/neuroethology/MARS_Developer

Software MARS based Python pipeline used for detection, pose estimation and behavior classification in experiments of any format. Repository contains all the code you'll need to train your own version of MARS.

Proper citation: MARS Developer (RRID:SCR_022346) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/led-matrix-stimuli/

Open source device consists of three LED matrices that can be independently controlled via open source Arduino Uno microcontroller. Matrices of LEDs are mounted above nose pokes to examine perceptual decision making in rats. Highly modifiable LED matrices for visual stimulus presentation in behavioral studies.Designs for printing these accessory devices are available in GitHub account for the project.

Proper citation: LED Matrix Stimuli (RRID:SCR_022345) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/clara/

Closed loop automated reaching apparatus for interrogating complex motor behaviors.Mechanical components include behavior box, series of cameras, and food pellet dispenser. Single workstation computer manages cameras, communicates with microcontroller, and analyzes mouse behavior in real time using modules extracted from DeepLabCut. Integrates fully automated, markerless kinematic tracking of multiple features to classify animal behavior and delivers neural stimulation based on behavioral outcomes. CLARA is compatible with advanced neurophysiological tools, enabling testing of neurostimulation devices and identification of novel neurological biomarkers.System fully automates trial initiation and pellet delivery and is capable of accurately delivering stimulation in response to trial outcome with short latency.

Proper citation: Closed Loop Automated Reaching Apparatus (RRID:SCR_022365) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/tweetynet/

Software tool as single neural network model that learns how to segment spectrograms of birdsong into annotated syllables.

Proper citation: TweetyNet (RRID:SCR_022360) Copy   

•   Source: SciCrunch Registry

https://cellexplorer.org/

Open source framework for single cell characterization and visualization.Graphical user interface, standardized processing module and data structure for exploring and classifying single cells acquired using extracellular electrodes.

Proper citation: CellExplorer (RRID:SCR_022358) Copy   

•   Source: SciCrunch Registry