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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
openEyeTrack project
 
Resource Report
Resource Website
openEyeTrack project (RRID:SCR_021399) data or information resource, instrument resource, portal, project portal Project related to measurement of fast eye movement dynamics.Tracking eye position in head fixed applications system created by scientists from Boston University. Includes software tool as part of multithreaded eye tracker and Teledyne DALSA Camera with GigE-V framework APIs for Linux. Multithreaded eye tracker, tracking eye position system, head fixed application, OpenBehavior, Instrument is listed by: OpenBehavior
is related to: openEyeTrack
has parent organization: Boston University; Massachusetts; USA
DOI:10.21105/joss.01631 Free, Freely available SCR_021399 openEyeTrack 2026-09-05 06:29:39 0
Actifield project
 
Resource Report
Resource Website
1+ mentions
Actifield project (RRID:SCR_021452) data or information resource, instrument resource, portal, project portal Project related to measuring locomotor activity.System includes infrared motion detection and arduino to record activity in variety of chamber set ups. Provides actimeter and software tool to measure and record locomotor activity. Measure locomotor activity, record locomotor activity, rodent locomotor activity, OpenBehavior, Instrument is listed by: OpenBehavior DOI:10.1016/j.ohx.2018.e00047 Free, Freely available SCR_021452 Actifield 2026-09-05 06:29:40 1
Rodent Activity Detector project
 
Resource Report
Resource Website
Rodent Activity Detector project (RRID:SCR_021451) RAD data or information resource, instrument resource, portal, project portal Project related to tracking and recording activity in rodent home cages.Provides device that utilizes passive infrared (PIR) sensor to detect movement in cages and logs data to microSD card. Device is wireless and battery powered, and can record data for about 3 weeks on charge. Passive infrared sensor, detect movement in cages, logs data to microSD card, wireless device, battery powered device, record data, instrument, equipment, USEDit, OpenBehavior, Instrument is listed by: OpenBehavior DOI:10.1523/eneuro.0160-19.2019 Free, Freely available SCR_021451 Rodent Activity Detector 2026-09-05 06:29:39 0
Automated Home Cage Rodent Two bottle Choice Test project
 
Resource Report
Resource Website
Automated Home Cage Rodent Two bottle Choice Test project (RRID:SCR_021445) data or information resource, instrument resource, portal, project portal Project related to studies of liquid ingestive behaviors used in neuroscience to investigate reward related behavior, metabolism, and circadian biology. Provides automated home cage sipper device for monitoring liquid ingestive behavior in rodents developed by Washington University, St. Louis scientists. Homecage fitted apparatus for automated, photobeam based detection of licks in two bottle choice task. Automated home cage sipper device, Sipper, monitoring liquid, ingestive behavior, rodents, instrument, equipment, USEDit, OpenBehavior, Instrument is listed by: OpenBehavior
is related to: SipperViz
DOI:10.1523/eneuro.0292-19.2019 Free, Freely available SCR_021445 Automated Home Cage Rodent Two bottle Choice Test 2026-09-05 06:29:39 0
Platform for Acoustic STArtle project
 
Resource Report
Resource Website
Platform for Acoustic STArtle project (RRID:SCR_021446) PASTA, ratPASTA data or information resource, instrument resource, portal, project portal Project related to multifunctional neurobehavioral system developed by scientists at University of Zagreb School of Medicine, Zagreb, Croatia.System includes hardware and software tools.Provides software package for processing and visualising data from startle experiments in rodents or experiments measuring grip strength in rodents. Startle experiments, rodent, experiments measuring rodents grip strength, OpenBehavior, Instrument is listed by: OpenBehavior
is related to: Platform for Acoustic STArtle
DOI:10.1038/s41598-021-82710-6 Free, Freely available SCR_021446 Platform for Acoustic STArtle 2026-09-05 06:29:39 0
Stytra project
 
Resource Report
Resource Website
Stytra project (RRID:SCR_021416) data or information resource, instrument resource, portal, project portal Project related to involvement in larval zebrafish behavioral experiments.Provides integrated system for stimulation, tracking and closed loop behavioral experiments. Provides timed stimulus presentation, interfacing with external devices and simultaneous real time tracking of behavioral parameters such as position, orientation, tail and eye motion in both freely swimming and head restrained preparations. Control stimulation, track behaviour, closed loop behavioral experiments, larval zebrafish, behavioral parameters, position, orientation, tail, eye motion, freely swimming, head restrained, DeepLabCut, OpenBehavior, Instrument is listed by: OpenBehavior
is related to: Stytra
DOI:10.1371/journal.pcbi.1006699 Free, Freely available SCR_021416 Stytra 2026-09-05 06:29:39 0
LocoWhisk project
 
Resource Report
Resource Website
1+ mentions
LocoWhisk project (RRID:SCR_021430) data or information resource, instrument resource, portal, project portal Portable behavioural set up that incorporates both gait analysis (using pedobarograph) and whisker movements (using high speed video camera and infrared light source).Automatically records both whisker and gait information and provides added statistical tools to analyse data. LocoWhisk system includes ARTv2 software for simultaneous measurement of locomotion behaviours and whisker movements. Simultaneous measurement, locomotion behaviours, whisker movements, rodent behaviour, OpenBehavior, Instrument is listed by: OpenBehavior DOI:10.1016/j.jneumeth.2019.108440 Free, Freely available SCR_021430 LocoWhisk 2026-09-05 06:29:39 1
FaceSync project
 
Resource Report
Resource Website
FaceSync project (RRID:SCR_021393) data or information resource, instrument resource, portal, project portal Project related to emotions and facial expressions. Includes open source guide to building affordable head mount for camera to maintain high temporal and spatial resolution of face throughout duration of experiment. Device is paired with FaceSync, Python toolbox which automatically synchronizes recorded facial expressions to videos and events such as social interactions. Automatically synchronize videos, manually align audio, plot facial landmark movements, graph data, head mounted camera setup, 3D blueprints, recording facial expressions, OpenBehavior, Bio.Tools, Instrument is listed by: OpenBehavior
is related to: FaceSync
PMID:32185017 Free, Freely available SCR_021393 2026-09-05 06:29:39 0
Head-Fixed Setup for Combined Behavior, Electrophysiology, and Optogenetics project
 
Resource Report
Resource Website
Head-Fixed Setup for Combined Behavior, Electrophysiology, and Optogenetics project (RRID:SCR_021427) data or information resource, instrument resource, portal, project portal Project related to temporally controlled rodent behavior. Provides system which utilizes optimal open source setup of hardware and software through behavioral setup for temporally controlled rodent behavior. Used for combined behavior, electrophysiology and optogenetics experiments. System allows for training of head fixed animals with calibrated sound stimuli, precisely timed fluid and air puff presentations as reinforcers.Combines microcontroller based behavior control with sound delivery system for acoustic stimuli, fast solenoid valves for reinforcement delivery and custom built sound attenuated chamber. Head fixed animals training, calibrated sound stimuli, timed fluid reinforcer, air puff presentations reinforce, temporally controlled rodent behavior, Bonsai, Bpod, Open Ephys, OpenBehavior, Instrument is listed by: OpenBehavior DOI:10.3389/fnsys.2018.00018 Free, Freely available SCR_021427 Electrophysiology, and Optogenetics, Head-Fixed Setup for Combined Behavior 2026-09-05 06:29:39 0
KineMouse Wheel project
 
Resource Report
Resource Website
KineMouse Wheel project (RRID:SCR_021425) data or information resource, instrument resource, portal, project portal Project is related to Columbia University designed KineMouse Wheel, light weight running wheel for head fixed locomotion that allows for 3D positioning of mice with single camera. System uses single camera and DeepLabCut (or similar) software. Behavior apparatus, behavioral analysis system, running wheel, head fixed locomotion in mice, OpenBehavior, Instrument is listed by: OpenBehavior
has parent organization: Columbia University; New York; USA
DOI:10.7554/eLife.63596 Free, Freely available SCR_021425 KineMouse Wheel 2026-09-05 06:29:39 0
Mousecam project
 
Resource Report
Resource Website
Mousecam project (RRID:SCR_021422) data or information resource, instrument resource, portal, project portal Project related to capturing detailed behavior in freely moving mice. System combines lightweight head mounted camera and head movement sensors to detect behaviors in mice. Used to monitor behaviors including eye position, whisking, and ear movements in unrestrained animals.Can be mounted in combination with neural implants for recording brain activity.Provides software Python package with functions for extracting and analyzing data recorded using camera. Lightweight head mounted camera system, head movement sensors, monitor eye position, monitor pupil dilation, monitor whisking, monitor pinna movements, monitor head motion, unrestrained mice, freely behaving mice, multichannel electrophysiology, OpenBehavior, Instrument is listed by: OpenBehavior
is related to: Mousecam
DOI:10.1016/j.neuron.2018.09.020 Free, Freely available SCR_021422 Mousecam 2026-09-05 06:29:39 0
Capactive Touch Sensor project
 
Resource Report
Resource Website
Capactive Touch Sensor project (RRID:SCR_021486) data or information resource, instrument resource, portal, project portal Project related to accurately counting and monitoring the behavior of organisms.Provides open source capacitive touch sensing system.Capacitive sensors are positioned to readily detect direct physical touches from rodent under investigation. Device,designed around capacitive touch sensor MPR121,accurately counts and monitors behavior of organisms. Capacitive touch sensing system, capacitive sensor, detect direct physical touch, rodent touch, capacitive touch sensor, MPR121 sensor, accurate count, organism behavior monitoring, OpenBehavior, Instrument is listed by: OpenBehavior DOI:10.1016/j.mex.2020.101024 Free, Freely available SCR_021486 Capactive Touch Sensor 2026-09-05 06:29:40 0
Two Armed Bandit Task project
 
Resource Report
Resource Website
1+ mentions
Two Armed Bandit Task project (RRID:SCR_021483) 2ABT data or information resource, instrument resource, portal, project portal Project related to training mice on task that requires continued updating of action/outcome relationships. Behavioral project includes task protocol and corresponding build instructions.Open source behavioral box used to train mice on task that requires continued updating of action/outcome relationships. Permits investigation of motivated behavior that requires flexible relationships between sensory stimuli and motor action. Project provided by Harvard Medical School scientists. Behavioral box, train mice, action continued updating, outcome relationships updating, motivated behavior investigation, flexible relationships, sensory stimuli, motor action, OpenBehavior, Instrument is listed by: OpenBehavior
has parent organization: Harvard Medical School; Massachusetts; USA
Free, Freely available SCR_021483 Two Armed Bandit Task 2026-09-05 06:29:40 2
FinchScope project
 
Resource Report
Resource Website
FinchScope project (RRID:SCR_021484) data or information resource, instrument resource, portal, project portal Project related to fluorescent imaging. Provides single photon fluorescent imaging microscope systems. System includes modular in vivo all optical neurophysiology rigs with transparent hardware, and acquisition and analysis software.Provide designs for 3D printed, lightweight, wireless capable microscope and motorized commutator, designed for multi month monitoring neural activity of zebra finches while they sing their courtship songs. Adapted for rodents and birds such as canaries. Single photon, fluorescent imaging, microscope systems, OpenBehavior, Instrument is listed by: OpenBehavior DOI:10.1088/1741-2552/aa6806 Free, Freely available SCR_021484 FinchScope 2026-09-05 06:29:40 0
UCLA Miniscope project
 
Resource Report
Resource Website
1+ mentions
UCLA Miniscope project (RRID:SCR_021480) data or information resource, instrument resource, portal, project portal Project related to fluorescence imaging to record neural activity in awake, freely behaving mice.Provided system is developed by UCLA scientists. Miniscope system includes Miniscope with single, flexible coaxial cable to carry power, control signals, and imaging data to open source Data Acquisition hardware and software. Open source miniature fluorescence microscope uses wide-field fluorescence imaging to record neural activity in awake, freely behaving mice. Miniature fluorescence microscope, wide field fluorescence imaging, record neural activity, activity record, OpenBehavior, Instrument is listed by: OpenBehavior
is related to: E-Scope
has parent organization: University of California at Los Angeles; California; USA
SCR_021480 UCLA Miniscope 2026-09-05 06:29:40 2
Ardbark project
 
Resource Report
Resource Website
Ardbark project (RRID:SCR_021494) data or information resource, instrument resource, portal, project portal Project related to fear conditioning studies.Includes hardware and software tools. Provides Arduino based device for producing naturalistic stimuli which can be integrated with existing commercial operant chambers with few modifications.. Stores custom made .wav files on SD card, interfaces with Med System and plays the .wav files through ceiling mounted speakers. Arduino based device, naturalistic stimuli, behavioral response, OpenBehavior, Instrument is listed by: OpenBehavior Free, Freely available SCR_021494 Ardbark 2026-09-05 06:29:40 0
Novel Gustometer for Human Taste Research project
 
Resource Report
Resource Website
Novel Gustometer for Human Taste Research project (RRID:SCR_021495) data or information resource, instrument resource, portal, project portal Project related to taste sensory system research in humans on behavioral, electrophysiological and hemodynamic activity levels.Provided system includes hardware and software tools. Gustometer, taste sensory system, behavioral activity level, electrophysiological activity level, hemodynamic activity level, OpenBehavior, Instrument is listed by: OpenBehavior DOI:10.3758/s13428-018-1145-1 Free, Freely available SCR_021495 Novel Gustometer for Human Taste Research 2026-09-05 06:29:40 0
Home Cage Automated Skilled Reaching Apparatus project
 
Resource Report
Resource Website
Home Cage Automated Skilled Reaching Apparatus project (RRID:SCR_021492) HASRA data or information resource, instrument resource, portal, project portal Project includes system for individualized training of group housed mice in single pellet reaching task.System allows user to host up to 5 mice in their home environment and automatically administer single pellet reaching test to those animals.Platform for training and assessing skilled reaching in mice with minimal need for experimenter handling. Individualized training, group housed mice, single pellet reaching task, assessing skilled reaching in mice, OpenBehavior, Instrument is listed by: OpenBehavior DOI:10.1523/eneuro.0242-20.2020 Free, Freely available SCR_021492 Home Cage Automated Skilled Reaching Apparatus 2026-09-05 06:29:40 0
DIY-NAMIC project
 
Resource Report
Resource Website
DIY-NAMIC project (RRID:SCR_021489) data or information resource, instrument resource, portal, project portal Project is related to measurement of complex phenotypes in homecage. Homecage automated open source behavioral testing sytem to enable high throughput 24h testing of many standard operant paradigms. Using Arduino platform and easily sourced inexpensive components system can display light cues and dispense liquid rewards and has nosepoke receptacles with infrared detectors for operant responses, within homecage.Method provided by Dartmouth College scientists. Behavioral testing system, homecage, Arduino platform, dispense liquid rewards, nosepoke receptacles, infrared detectors, OpenBehavior, Instrument is listed by: OpenBehavior
has parent organization: Dartmouth College; New Hampshire; USA
DOI:10.1523/eneuro.0160-20.2020 Free, Freely available SCR_021489 DIY-NAMIC 2026-09-05 06:29:40 0
CapTouch project
 
Resource Report
Resource Website
CapTouch project (RRID:SCR_021488) data or information resource, instrument resource, portal, project portal Project related to study learning and memory in preclinical research.Included tracking system for object recognition tasks provides standardization across experiments and labs.Automates scoring process using capacitive sensors, while providing validated 3D-printed objects in order to standardize object recognition to study learning and memory in preclinical research.Used for accurate measurement of interaction time during object recognition tasks. Tracking system, object recognition tasks, standardization across experiments, automated scoring process, capacitive sensors, standardize object recognition, study learning and memory, accurate measurement, interaction time, OpenBehavior., Instrument is listed by: OpenBehavior DOI:10.1523/eneuro.0310-20.2020 Free, Freely available SCR_021488 CapTouch 2026-09-05 06:29:40 0

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