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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Brain Segmentation Testing Protocol Resource Report Resource Website |
Brain Segmentation Testing Protocol (RRID:SCR_009445) | Brain Segmentation Testing Protocol | data or information resource, data set | A free collection of MRI brain images for testing segmentation algorithms. It is available for download to assess the accuracy, reproducibility and sensitivity of MRI segmentation software. It includes data from infants and adults as well as patients with Alzheimer's disease. | analyze, magnetic resonance, nifti, oasis, segmentation, software, test data, image collection, mri, segmentation software, infant, adult human, child, alzheimer's disease, brain imaging, data set, research, brain |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: King's College London; London; United Kingdom |
PMID:21835253 | Available for download | nlx_155588 | SCR_009445 | 2026-09-05 06:33:30 | 0 | |||||||
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NYU Institute for Pediatric Neuroscience Sample Resource Report Resource Website |
NYU Institute for Pediatric Neuroscience Sample (RRID:SCR_010458) | NYU IPN Sample, NYUIQ | data or information resource, data set | Datasets including a collection of scans from 49 psychiatrically evaluated neurotypical adults, ranging in age from 6 to 55 years old, with age, gender and intelligence quotient (IQ) information provided. Future releases will include more comprehensive phenotypic information, and child and adolescent datasets, as well as individuals from clinical populations. The following data are released for every participant: * At least one 6-minute resting state fMRI scan (R-fMRI) * * One high-resolution T1-weighted mprage, defaced to protect patient confidentiality * Two 64-direction diffusion tensor imaging scans * Demographic information (age, gender) and IQ-measures (Verbal, Performance, and Composite; Weschler Abbreviated Scale of Intelligence - WASI) * Most participants have 2 R-fMRI scans, collected less than 1 hour apart in the same scanning session. Rest_1 is always collected first. | adult human, young human, intelligence quotient, child, adolescent, clinical, resting state fmri, t1-weighted, mprage, diffusion tensor imaging, fsiq, viq, piq, neuroimaging, brain, image collection |
has parent organization: 1000 Functional Connectomes Project has parent organization: New York University; New York; USA |
Neurotypical, Aging | Autism Speaks ; Stavros Niarchos Foundation ; Leon Levy Foundation ; Phyllis Green and Randolph Cwen ; NIMH R01MH083246 |
Creative Commons Attribution-NonCommercial License | nlx_157644 | SCR_010458 | NYU Phyllis Green and Randolph Cwen Institute for Pediatric Neuroscience Sample | 2026-09-05 06:33:43 | 0 | |||||
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Virginia Tech Carilion Research Institute Sample Resource Report Resource Website |
Virginia Tech Carilion Research Institute Sample (RRID:SCR_010459) | VTCRI Sample | data or information resource, data set | Dataset including a T1 weighted anatomical image as well as two 10-minute resting state scans acquired during the same session from 25 psychiatrically screened healthy adults (community sample) ranging in age from 18 to 65 years old, with age, sex, education level, and ethnicity provided. Some subjects also returned several weeks after the first scan for a second scanning session. The number of days between scan sessions, for subjects that had two sessions, is indicated in the demographics spreadsheet. The study scanning protocol included: # 13 sec localizer # 4 minute 38 second T1 weighted anatomical # Subject given instructions for resting state scan #1 # 10 minute 4 second resting state scan #1 # Subject given instructions for resting state scan #2 # 10 minute 4 second resting state scan #2 Scanning was performed on one of three different 3T Siemens TIM TRIOs at the Human Neuroimaging Lab at Baylor College of Medicine in Houston, Texas. All scans were acquired using the standard Siemen''s TIM 12-channel head matrix. The resting state scans were acquired with a custom sequence that is a slight modification to the standard Siemen''s EPI sequence that supports real-time fMRI. Images were acquired slightly oblique to minimize dephasing in the orbito-frontal cortex. Detailed scanning parameters are included in separate .pdf files. | resting state fmri, t1-weighted, mprage, adult human, early adult human, late adult human, middle adult human, image collection, neuroimaging, brain, demographic, fmri, aging |
has parent organization: 1000 Functional Connectomes Project has parent organization: Virginia Polytechnic Institute and State University; Virginia; USA |
Healthy | Creative Commons Attribution-NonCommercial License | nlx_157645 | SCR_010459 | Virginia Tech CRI Sample | 2026-09-05 06:33:43 | 0 | ||||||
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Princeton University Confocal Microscopy Core Facility Resource Report Resource Website |
Princeton University Confocal Microscopy Core Facility (RRID:SCR_017812) | access service resource, core facility, service resource | Core provides researchers with ability to visualize samples, from monolayers and small organisms, such as developing fly and fish embryos, to very thick sections from brain and other organ tissues by using instruments including laser point (LSCM) and field scanning confocal (CSU), Total Internal Reflectance Fluorescence (TIRF), Multi Photon (MP), and Widefield (WF). Services in imaging in mammalian cells, yeast cells, Drosophila and Zebrafish embryos and ovaries, bacteria, sections of brain and other tissues, in both fixed and live specimens, Quantitative imaging methods such as FRAP, FLIP, and FRET, software packages for image processing, analysis, and 3D image reconstruction. | Confocal, microscopy, visualize, sample, fly, fish, embryo, thick, section, organ, tissue, brain, imaging, mammalian, cell, yeast, drosophila, zebrafish, ovary, bacteria, fixed, live, speciment, quantitative, 3D image, reconstruction, service, core, ABRF | is listed by: ABRF CoreMarketplace | ABRF_568 | SCR_017812 | Confocal Microscopy Core Facility | 2026-09-05 06:34:13 | 0 | |||||||||
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Case Western Reserve University Imaging Research Core Facility Resource Report Resource Website |
Case Western Reserve University Imaging Research Core Facility (RRID:SCR_017917) | access service resource, core facility, service resource | Core provides preclinical and clinical imaging instrumentation and techniques.Preclinical services include Bioluminescence,Fluorescence,In situ cryoimaging,Magnetic Resonance Imaging (MRI),Positron Emission Tomography (PET),Radiochemistry Synthesis, Scintigraphy,Ultrasound,X-ray / Computed Tomography (CT) / micro CT,Image Processing / Quantification clinical research imaging systems. Clinical services include Comprehensive MR imaging research services, Dedicated Siemens Skyra 3T MRI scanner, Large animal preclinical studies, or clinical human research may be conducted,Structural and functional brain scanning can be performed with Avotec LCD Projection System, Coodination of access to PET and CT scanners for additional preclinical and human imaging studies. Core includes PET radiopharmaceutical core facility. Core staff provide radiochemistry synthesis. | Preclinical, clinical, imaging, instrumentation, technique, bioluminescence, fluorescence, in situ cryoimaging, magnetic, resonance, imagingi, MRI, positron, emission, tomography, radiochemistry, synthesis, scintigraphy, ultrasound, x-ray, CT, micro CT, image, processing, quantification, brain, scanning, service, core, ABRF | is listed by: ABRF CoreMarketplace | Open | ABRF_797 | SCR_017917 | Imaging Research Core | 2026-09-05 06:34:15 | 0 | ||||||||
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JOSA Resource Report Resource Website |
JOSA (RRID:SCR_024756) | data processing software, image analysis software, registration software, software application, software resource | Software tool for joint surface based registration and atlas construction of brain geometry and function.Cortical registration framework that jointly models mismatch between geometry and function while simultaneously learning unbiased population specific atlas. | joint surface based registration, atlas construction, brain, fMRI, brain structure and function, recognizing mismatch between geometry and function, |
is a plug in for: FreeSurfer is organization facet of: BRAIN Initiative Cell Atlas Network |
DOI:10.48550/arXiv.2311.08544 | Restricted | SCR_024756 | JOint Spherical registration and Atlas building | 2026-09-05 06:34:40 | 0 | ||||||||
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Mind Research Network - COINS Resource Report Resource Website 10+ mentions |
Mind Research Network - COINS (RRID:SCR_000805) | COINS | data or information resource, data repository, data set, service resource, storage service resource | A web-based neuroimaging and neuropsychology software suite that offers versatile, automatable data upload/import/entry options, rapid and secure sharing of data among PIs, querying and export all data, real-time reporting, and HIPAA and IRB compliant study-management tools suitable to large institutions as well as smaller scale neuroscience and neuropsychology researchers. COINS manages over over 400 studies, more than 265,000 clinical neuropsychological assessments, and 26,000 MRI, EEG, and MEG scan sessions collected from 18,000 participants at over ten institutions on topics related to the brain and behavior. As neuroimaging research continues to grow, dynamic neuroinformatics systems are necessary to store, retrieve, mine and share the massive amounts of data. The Collaborative Informatics and Neuroimaging Suite (COINS) has been created to facilitate communication and cultivate a data community. This tool suite offers versatile data upload/import/entry options, rapid and secure sharing of data among PIs, querying of data types and assessments, real-time reporting, and study-management tools suitable to large institutions as well as smaller scale researchers. It manages studies and their data at the Mind Research Network, the Nathan Kline Institute, University of Colorado Boulder, the Olin Neuropsychiatry Research Center (at) Hartford Hospital, and others. COINS is dynamic and evolves as the neuroimaging field grows. COINS consists of the following collaboration-centric tools: * Subject and Study Management: MICIS (Medical Imaging Computer Information System) is a centralized PostgreSQL-based web application that implements best practices for participant enrollment and management. Research site administrators can easily create and manage studies, as well as generate reports useful for reporting to funding agencies. * Scan Data Collection: An automated DICOM receiver collects, archives, and imports imaging data into the file system and COINS, requiring no user intervention. The database also offers scan annotation and behavioral data management, radiology review event reports, and scan time billing. * Assessment Data Collection: Clinical data gathered from interviews, questionnaires, and neuropsychological tests are entered into COINS through the web application called Assessment Manager (ASMT). ASMT's intuitive design allows users to start data collection with little or no training. ASMT offers several options for data collection/entry: dual data entry, for paper assessments, the Participant Portal, an online tool that allows subjects to fill out questionnaires, and Tablet entry, an offline data entry tool. * Data Sharing: De-identified neuroimaging datasets with associated clinical-data, cognitive-data, and associated meta-data are available through the COINS Data Exchange tool. The Data Exchange is an interface that allows investigators to request and share data. It also tracks data requests and keeps an inventory of data that has already been shared between users. Once requests for data have been approved, investigators can download the data directly from COINS. | mri, fmri, neuropsychological assessment, neuroimaging, diffusion tensor imaging assay, magnetic resonance imaging assay, functional mri assay, diffusion magnetic resonance imaging, magnetoencephalography, electroencephalography, brain, behavior, data sharing, data management, clinical, computed tomography, magnetic resonance, single photon emission computed tomography, positron emission tomography, clinical assessment clinical neuroinformatics, image collection, mri 2d image, database application |
is used by: Consortium for Reliability and Reproducibility is used by: DataLad is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: NKI-RS Enhanced Sample has parent organization: Mind Research Network is parent organization of: MCIC |
Aging | NIBIB 1 R01 EB 000840; NIBIB 1 R01 EB 006841; NIBIB 1 R01 EB 005846 |
PMID:22275896 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_144067 | http://www.nitrc.org/projects/coins | SCR_000805 | Mind Research Network - Collaborative Informatics and Neuroimaging Suite, Collaborative Informatics Neuroimaging Suite, Collaborative Informatics and Neuroimaging Suite | 2026-09-05 06:29:52 | 20 | |||
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University of California at Los Angeles, School of Medicine: Neuro Imaging Lab of Thompson Resource Report Resource Website |
University of California at Los Angeles, School of Medicine: Neuro Imaging Lab of Thompson (RRID:SCR_001924) | curriculum material, data or information resource, narrative resource, slide, training material, video resource | The UCLA laboratory of neuroimaging is working in several areas to enhance knowledge of anatomy, including brain mapping in large human populations, HIV, Schizophrenia, methamphetamine, tumor growth and 4d brain mapping, genetics and detection of abnormalities. | engineer, genetics, abnormality, alzheimer's, anatomy, atlas, brain, computational, cortical, dementia, disease, growth, histologic, hiv, human, image, knowledge, mapping, mathematical, mathematician, medical doctor, methamphetamine, model, mri, neuroscientist, pet, polymorphism, population, schizophrenia, spect, structure, tumor, neuroimaging | has parent organization: University of California at Los Angeles; California; USA | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10496 | SCR_001924 | UCLA, Thompson Lab | 2026-09-05 06:29:54 | 0 | ||||||||
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MindSeer Resource Report Resource Website |
MindSeer (RRID:SCR_003019) | MindSeer | data processing software, data visualization software, software application, software resource | A cross-platform application for 3D brain visualization for multi-modality neuroimaging data written in Java/Java3D, that runs in both standalone and client-server mode. It supports basic data management capabilities, visualization of 3D surfaces (SPM's output or OFF files), volumes (Analyze, NIFTI or Minc) and label sets. MindSeer has 2 different modes: # Client/Server is designed to allow users to visualize data that is stored centrally and enhance collaboration. # Standalone mode is available to view local data and is built for more performance than Client/Server Both modes have the same interface and support the same features. It has a modular architecture and is designed to be extensible. Requirements: # Java 5.0 or above. # Java Web Start. # Java3D (installed automatically by Web Start). | 3d surface, visualization, multimodal, volume, neuroimaging, 3-d volume, surface, java, java3d, brain, brain structure, magnetic resonance |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Biositemaps has parent organization: University of Washington; Seattle; USA |
Human Brain Project ; NIDCD DC02310 |
PMID:17937818 | GNU General Public License, With some, GNU Lesser General Public License, Components (MatFile and NIFTI jar files). | nif-0000-00525 | http://www.nitrc.org/projects/mindseer | SCR_003019 | 2026-09-05 06:29:56 | 0 | |||||
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TumorSim Resource Report Resource Website 1+ mentions |
TumorSim (RRID:SCR_002604) | simulation software, software application, software resource | Simulation software that generates pathological ground truth from a healthy ground truth. The software requires an input directory that describes a healthy anatomy (anatomical probabilities, mesh, diffusion tensor image, etc) and then outputs simulation images. | clinical neuroinformatics, magnetic resonance, mri, brain, segmentation, simulation, tumor, ground truth |
uses: BrainWeb - Simulated Brain Database is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of Utah; Utah; USA |
Cancer | NIBIB R01 EB000219 | PMID:19119055 | Free, Available for download, Freely available | nlx_156007 | SCR_002604 | 2026-09-05 06:29:55 | 1 | ||||||
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ConnectomeDB Resource Report Resource Website 50+ mentions |
ConnectomeDB (RRID:SCR_004830) | ConnectomeDB | data or information resource, data repository, database, image collection, image repository, service resource, storage service resource | Data management platform that houses all data generated by the Human Connectome Project - image data, clinical evaluations, behavioral data and more. ConnectomeDB stores raw image data, as well as results of analysis and processing pipelines. Using the ConnectomeDB infrastructure, research centers will be also able to manage Connectome-like projects, including data upload and entry, quality control, processing pipelines, and data distribution. ConnectomeDB is designed to be a data-mining tool, that allows users to generate and test hypotheses based on groups of subjects. Using the ConnectomeDB interface, users can easily search, browse and filter large amounts of subject data, and download necessary files for many kinds of analysis. ConnectomeDB is designed to work seamlessly with Connectome Workbench, an interactive, multidimensional visualization platform designed specifically for handling connectivity data. De-identified data within ConnectomeDB is publicly accessible. Access to additional data may be available to qualified research investigators. ConnectomeDB is being hosted on a BlueArc storage platform housed at Washington University through the year 2020. This data platform is based on XNAT, an open-source image informatics software toolkit developed by the NRG at Washington University. ConnectomeDB itself is fully open source. | brain, connectivity, human, adult human, evaluation, clinical, behavior, data set, diffusion imaging, resting-state fmri, task-evoked fmri, t1-weighted mri, t2-weighted mri, structural mapping, myelin mapping, magnetoencephalography, electroencephalography, fmri, twin |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: XNAT - The Extensible Neuroimaging Archive Toolkit has parent organization: Washington University in St. Louis; Missouri; USA works with: Connectome Workbench |
Healthy, Twin, Non-twin sibling | NIH Blueprint for Neuroscience Research ; Washington University in St. Louis; Missouri; USA ; McDonnell Center for Systems Neuroscience ; NIMH 1U54MH091657 |
PMID:22366334 | Account required, Open unspecified license, Acknowledgement required, See Data Use Terms, The community can contribute to this resource | nlx_143923 | SCR_004830 | 2026-09-05 06:29:57 | 63 | |||||
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Brain-Art Competition Resource Report Resource Website |
Brain-Art Competition (RRID:SCR_005360) | Brain-Art Competition | data or information resource, image, portal, topical portal | An annual Brain-Art Competition to recognize the beauty and creativity of artistic renderings emerging from the neuroimaging community. Submission deadline: June 1st, 2012. Awards will be announced on June 11th during the OHBM conference in Beijing. (You need not be present to win) Countless hours are devoted to creation of informative visualizations for communicating neuroscientific findings. This competition once again aims to recognize the artistic creativity of our community that often goes underappreciated in the publication process. We are inviting researchers to submit their favorite unpublished works for entry. Both team and single-person entries are welcomed. The competition will have five award categories: # Best Representation of the Human Connectome # Best Abstract Brain Illustration # Best Educational Brain Illustration # Best Humorous Brain Illustration # Best Video Illustration of the Brain Submissions will be evaluated based on their aesthetic merit | neuroimaging, competition, data set, illustration, brain, art | has parent organization: Neuro Bureau | nlx_144427 | SCR_005360 | Neuro Bureau Brain-Art Competition | 2026-09-05 06:29:58 | 0 | ||||||||
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Brain Canada Resource Report Resource Website 10+ mentions |
Brain Canada (RRID:SCR_005053) | Brain Canada | data or information resource, funding resource, portal, topical portal | Brain Canada is a national non-profit organization that develops and supports collaborative, multidisciplinary, multi-institutional research across the neurosciences. Through partnering with the public, private and voluntary sectors, Brain Canada connects the knowledge and resources available in this area to accelerate neuroscience research and funding and maximize the output of Canada''s world-class scientists and researchers. Brain Canada was created to address the twin challenges of increasing the scale of brain research funding in Canada and widening its scope to encourage interdisciplinary collaboration to produce insights for treating multiple disorders. Brain Canada is built on the successes and model of NeuroScience Canada (NSC). Established in 1999, NSC raised more than $11.5 million, leveraged over $20 million with partnered funding, and funded 100 individual and teams of researchers in Canada. Brain Canada is the new vision for Canadian brain researchthe voice for the brain and the grouping of brain disorders, raising awareness about their prevalence and impact on individuals, families, the economy and society. But most important, through the research we are funding, we are giving hope to the millions of Canadians who are directly or indirectly touched by diseases, disorders, and injuries of the brain, spinal cord and nervous system. | brain, neuroscience, research, brain disorder | is related to: Canadian Open Neuroscience Platform | nlx_144038 | SCR_005053 | Brain Canada Foundation | 2026-09-05 06:29:58 | 11 | ||||||||
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Biomedical Informatics Research Network Resource Report Resource Website 10+ mentions |
Biomedical Informatics Research Network (RRID:SCR_005163) | BIRN | atlas, data or information resource, data repository, database, service resource, software resource, storage service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on February 22, 2023. National initiative to advance biomedical research through data sharing and online collaboration that provides data sharing infrastructure, software tools, strategies and advisory services. Groups may choose whether to share data internally or with external audiences. Hardware and data remain under control of individual user groups. | dti, fmri, alzheimer's disease, cognitive impairment, collaborative environment, cyberinfrastructure, data sharing, depressive disorder, information technology, infrastructure, memory dysfunction, microarray, mri, neurodegenerative disease, neuroinformatics, neuroimaging, genetics, biomedical material, neurobiology, electrophysiology, collaboration, biomedical, imaging, imaging system, biomedical engineering, brain, health |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Biositemaps is listed by: re3data.org is listed by: DataCite has parent organization: University of Southern California; Los Angeles; USA is parent organization of: Morphometry BIRN is parent organization of: Knowledge Engineering from Experimental Design is parent organization of: Mouse Biomedical Informatics Research Network is parent organization of: NIH Topic Maps - A Topic Database of NIH Funded Grants is parent organization of: Human Imaging Database is parent organization of: Function BIRN is parent organization of: B0 and eddy current correction for DTI is parent organization of: BrainSuite is parent organization of: Open Access Series of Imaging Studies |
NIH Blueprint for Neuroscience Research ; NCRR 1U24-RR025736; NCRR U24-RR021992; NCRR U24-RR021760; NCRR 1U24-RR026057-01; NIGMS U24 GM104203 |
PMID:21515543 PMID:18348946 PMID:17238407 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00027, r3d100010770 | http://www.nitrc.org/projects/birn, https://doi.org/10.17616/R3F02K | http://www.birncommunity.org/, https://neuroscienceblueprint.nih.gov/factSheet/birn.htm | SCR_005163 | BIRN - The Conduit for Biomedical Research, Biomedical Informatics Research Network - The Conduit for Biomedical Research | 2026-09-05 06:29:58 | 12 | |||
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University of Kentucky Alzheimer's Disease Center Resource Report Resource Website |
University of Kentucky Alzheimer's Disease Center (RRID:SCR_008767) | UK-ADC | data or information resource, disease-related portal, portal, topical portal | Alzheimer's Disease Center that serves as the focal point for all Alzheimer's disease-related activities at the University of Kentucky and the Commonwealth of Kentucky providing an environment and core resources that catalyze innovative research, outreach, education, and clinical programs. Their ADC plans to build on its historic strengths and capitalize on emerging opportunities to provide an infrastructure that supports research designed to translate knowledge into therapeutic strategies for AD. They focus on two interrelated themes: Transitions and Translation. Their overall emphasis is to more effectively bridge the gap between basic research and clinical studies by facilitating translational efforts. They also carefully characterize transitions across the spectrum of cognitive impairment (normal/ preclinical AD/ MCI/ dementia), with focus on definition of early disease, and continue to support neuropathology as the bedrock of our center. The Alzheimer Disease Center's 2006-2011 grant award from the National Institute on Aging consists of five cores: * Administrative Core * Clinical Core * Biostatistics and Data Management Core * Neuropathology Core * Education & Information Transfer Core | late adult human, brain, memory, clinic, alzheimer |
has parent organization: Sanders Brown Center on Aging has parent organization: University of Kentucky; Kentucky; USA is parent organization of: University of Kentucky's Alzheimer's Disease Center |
Cognitive impairment, Alzheimer's disease, Aging, Mild cognitive impairment, Dementia | NIA | nlx_144058 | http://www.mc.uky.edu/coa/clinicalcore/ADC%20home%20page.html | SCR_008767 | UK Alzheimer's Disease Center, University of Kentucky Alzheimer's Disease Center, Alzheimer's Disease Center at the University of Kentucky | 2026-09-05 06:30:02 | 0 | |||||
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SPM Resource Report Resource Website 5000+ mentions Issue |
SPM (RRID:SCR_007037) | SPM | data analysis software, data processing software, image analysis software, software application, software resource | Software package for analysis of brain imaging data sequences. Sequences can be a series of images from different cohorts, or time-series from same subject. Current release is designed for analysis of fMRI, PET, SPECT, EEG and MEG. | analysis, brain, imaging, data, sequence, fMRI, PET, SPECT, EEG, MEG, bio.tools |
uses: Neuroimaging Data Model uses: imcalc: SPM batch image calculator is used by: rsfMRI_fconn calculation is used by: Automatic Analysis is used by: auto_acpc_reorient is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: 3DVC is listed by: Debian is listed by: bio.tools is listed by: SoftCite is affiliated with: Clinical Toolbox for SPM is affiliated with: Statistical non-Parametric Mapping is related to: WFU Biological Parametric Mapping Toolbox is related to: vis: SPM Visualized Statistics toolbox is related to: LEAD-DBS is related to: CCHMC Pediatric Brain Templates is related to: IBMA toolbox is related to: ArtRepair for robust fMRI is related to: ASL data processing tool box is related to: BrainVISA / Anatomist is related to: MRIcro Software is related to: xjView: A Viewing Program For SPM is related to: BrainMagix SPM Viewer is related to: MarsBaR region of interest toolbox for SPM is related to: NIRS-SPM is related to: SPM SS - fMRI functional localizers is related to: Wisconsin White Matter Hyperintensities Segmentation Toolbox is related to: Dementia-specific FDG PET Template for SPM analyses is related to: SPM Anatomy Toolbox is related to: MIPAV: Medical Image Processing and Visualization is related to: MATLAB is related to: hMRI-toolbox is related to: Sandwich Estimator Toolbox has parent organization: University College London; London; United Kingdom is required by: MRTool provides: TSDiffAna has plug in: ICN_Atlas works with: UManitoba - JHU Functionally Defined Human White Matter Atlas works with: NIAG Addiction Data works with: ICN_Atlas works with: spm_auto_reorient_coregister works with: Computational Anatomy Toolbox for SPM works with: FieldTrip works with: POAS4SPM |
Free, Available for download, Freely available | biotools:SPM | https://github.com/spm/spm12, https://bio.tools/SPM | https://www.fil.ion.ucl.ac.uk/spm/ | SCR_007037 | Statistical Parametric Mapping, SPM5, SPM2, SPM12, Statistical Parametric Mapping Software, SPM99, SPM8, SPM, SPM96 | 2026-09-05 06:30:00 | 8748 | |||||
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National Resource for Aplysia Resource Report Resource Website 10+ mentions |
National Resource for Aplysia (RRID:SCR_008361) | National Resource for Aplysia | biomaterial supply resource, material resource, organism supplier | Center where Aplysia californica are cultured and raised for research purposes. Aplysia from the facility serve in research on genomics, human brain function, toxicology for developmental studies, natural products, chemistry for isolation of novel anti-tumor and antibacterial compounds, in the study of transport by digestive tissues and have potential for use in studies of substance addiction and nerve senescence and regeneration. | disease, genomics, aplysia californica, research, brain | has parent organization: University of Miami; Florida; USA | NCRR ; NIH Office of the Director P40 OD010952 |
nif-0000-25472 | http://aplysia.miami.edu/ | SCR_008361 | 2026-09-05 06:30:02 | 14 | |||||||
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Is the Brain (Like) a Computer Resource Report Resource Website |
Is the Brain (Like) a Computer (RRID:SCR_008809) | Is the Brain (Like) a Computer | book, data or information resource, narrative resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 2, 2016. Is the Brain (Like) a Computer is an e-book written by Prof. Mark Dubin. It consists of the following: Introduction. Why do we consider the relationship of brains and computers and what does this have to do with consciousness? What's a Brain Made Of? A thought experiment. Test Drive a Turing Machine. A theoretical approach. Interim Summary. Many of the main pages have links to additional information. When you click on one of those links a NEW page will open ON TOP of the page you are clicking from. This convention is adopted so that you can look at the additional information and then easily return to the main page you got there from. | brain, human, image | has parent organization: University of Colorado; Colorado; USA | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_144392 | SCR_008809 | Is the Brain Like a Computer?, Is the Brain Like a Computer | 2026-09-05 06:30:02 | 0 | |||||||
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HDBase Resource Report Resource Website |
HDBase (RRID:SCR_007132) | HDBase | data or information resource, data set, disease-related portal, portal, topical portal | A community website for Huntington''s Disease (HD) research that currently contains Y2H and Mass spectrometry protein-protein interaction data centered around the HD protein (huntingtin) and information on therapeutic studies in mouse. Also available are raw Human and Mouse Affymetrix Microarray data. The protein interaction data is from several sources, including interactions curated from the literature by ISB staff, experimentally determined interactions produced by Bob Hughes and colleagues at Prolexys (currently password protected), and interactions reported in a recent publication by Goehler et al from Eric Wanker''s lab. Content areas that may be covered by the site include the following: * Therapeutic studies in mouse, primarily drug screens. * HD mouse models with a focus on timelines of disease progression. * Antibodies used in HD research. * Microarray gene expression studies. * Genes and proteins relevant to HD research. This includes HD itself, the growing list of proteins thought to interact directly or indirectly with huntingtin (Htt), and other genes and proteins implicated in the disease process. * Molecular pathways thought to be involved in the disease process. * Timelines of disease for Mouse models | drug, gene expression, huntingtin, mass spectrometry, microarray, protein interaction, protein-protein interaction, y2h, mouse model, treatment, disease, phenotype, brain, striatum, adipose, muscle, gene, protein, antibody, pathway |
uses: Cytoscape has parent organization: Institute for Systems Biology; Washington; USA |
Huntington''s disease, Control | Hereditary Disease Foundation | nif-0000-00153 | SCR_007132 | HDBase - A Community Website for Huntingtons Disease Research, HDBase - A Community Website for Huntington''s Disease Research | 2026-09-05 06:30:01 | 0 | ||||||
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Computational Neurobiology and Imaging Center Resource Report Resource Website 1+ mentions |
Computational Neurobiology and Imaging Center (RRID:SCR_013317) | CNIC | data or information resource, data set, portal, software resource, topical portal | Center to advance research and training in mathematical, computational and modern imaging approaches to understanding the brain and its functions. Software tools and associated reconstruction data produced in the center are available. Researchers study the relationships between neural function and structure at levels ranging from the molecular and cellular, through network organization of the brain. This involves the development of new computational and analytic tools for imaging and visualization of 3-D neural morphology, from the gross topologic characteristics of the dendritic arbor to the fine structure of spines and their synapses. Numerical simulations of neural mechanisms based on these structural data are compared with in-vivo and in-vitro electrophysiological recordings. The group also develops new theoretical and analytic approaches to exploring the function of neural models of working memory. The goal of this analytic work is to combine biophysically realistic models and simulations with reduced mathematical models that capture essential dynamical behaviors while reproducing the functionally important features of experimental data. Research areas include: Imaging Studies, Volume Integration, Visualization Techniques, Medial Axis Extraction, Spine Detection and Classification, Applications of Rayburst, Analysis of Spatially Complex Structures, Computational Modeling, Mathematical and Analytic Studies | brain, confocal, in-vitro, in-vivo, microscopy, morphology, morphometric, multi-photon, neural, neural function, neuron, simulation, stack, structure, synapse, topologic, variable, vessel, visualization, image, neuroscience, neurobiology, reconstruction, modeling, spatial, rayburst, spine, arbor, visual, tiling, imaging |
lists: NeuronStudio lists: Rayburst Open-Source Code lists: Volume Integration and Alignment System lists: Volume Integration and Alignment System Source Code lists: Polygonized Viewer lists: NeuroGL lists: TIFF Stack Sub-Sampler is related to: NeuroMorpho.Org is related to: Rayburst Open-Source Code is related to: Polygonized Viewer is related to: NeuroGL is related to: TIFF Stack Sub-Sampler is related to: NeuronStudio is related to: Volume Integration and Alignment System is related to: Volume Integration and Alignment System Source Code has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA |
Aging | Howard Hughes Medical Institute ; NIDCD ; NIA ; NIMH |
nif-0000-10200 | http://www.mssm.edu/cnic/ | SCR_013317 | 2026-09-05 06:30:05 | 7 |
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