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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
LocoWhisk project
 
Resource Report
Resource Website
1+ mentions
LocoWhisk project (RRID:SCR_021430) data or information resource, instrument resource, portal, project portal Portable behavioural set up that incorporates both gait analysis (using pedobarograph) and whisker movements (using high speed video camera and infrared light source).Automatically records both whisker and gait information and provides added statistical tools to analyse data. LocoWhisk system includes ARTv2 software for simultaneous measurement of locomotion behaviours and whisker movements. Simultaneous measurement, locomotion behaviours, whisker movements, rodent behaviour, OpenBehavior, Instrument is listed by: OpenBehavior DOI:10.1016/j.jneumeth.2019.108440 Free, Freely available SCR_021430 LocoWhisk 2026-09-05 06:29:39 1
FaceSync project
 
Resource Report
Resource Website
FaceSync project (RRID:SCR_021393) data or information resource, instrument resource, portal, project portal Project related to emotions and facial expressions. Includes open source guide to building affordable head mount for camera to maintain high temporal and spatial resolution of face throughout duration of experiment. Device is paired with FaceSync, Python toolbox which automatically synchronizes recorded facial expressions to videos and events such as social interactions. Automatically synchronize videos, manually align audio, plot facial landmark movements, graph data, head mounted camera setup, 3D blueprints, recording facial expressions, OpenBehavior, Bio.Tools, Instrument is listed by: OpenBehavior
is related to: FaceSync
PMID:32185017 Free, Freely available SCR_021393 2026-09-05 06:29:39 0
Head-Fixed Setup for Combined Behavior, Electrophysiology, and Optogenetics project
 
Resource Report
Resource Website
Head-Fixed Setup for Combined Behavior, Electrophysiology, and Optogenetics project (RRID:SCR_021427) data or information resource, instrument resource, portal, project portal Project related to temporally controlled rodent behavior. Provides system which utilizes optimal open source setup of hardware and software through behavioral setup for temporally controlled rodent behavior. Used for combined behavior, electrophysiology and optogenetics experiments. System allows for training of head fixed animals with calibrated sound stimuli, precisely timed fluid and air puff presentations as reinforcers.Combines microcontroller based behavior control with sound delivery system for acoustic stimuli, fast solenoid valves for reinforcement delivery and custom built sound attenuated chamber. Head fixed animals training, calibrated sound stimuli, timed fluid reinforcer, air puff presentations reinforce, temporally controlled rodent behavior, Bonsai, Bpod, Open Ephys, OpenBehavior, Instrument is listed by: OpenBehavior DOI:10.3389/fnsys.2018.00018 Free, Freely available SCR_021427 Electrophysiology, and Optogenetics, Head-Fixed Setup for Combined Behavior 2026-09-05 06:29:39 0
KineMouse Wheel project
 
Resource Report
Resource Website
KineMouse Wheel project (RRID:SCR_021425) data or information resource, instrument resource, portal, project portal Project is related to Columbia University designed KineMouse Wheel, light weight running wheel for head fixed locomotion that allows for 3D positioning of mice with single camera. System uses single camera and DeepLabCut (or similar) software. Behavior apparatus, behavioral analysis system, running wheel, head fixed locomotion in mice, OpenBehavior, Instrument is listed by: OpenBehavior
has parent organization: Columbia University; New York; USA
DOI:10.7554/eLife.63596 Free, Freely available SCR_021425 KineMouse Wheel 2026-09-05 06:29:39 0
Mousecam project
 
Resource Report
Resource Website
Mousecam project (RRID:SCR_021422) data or information resource, instrument resource, portal, project portal Project related to capturing detailed behavior in freely moving mice. System combines lightweight head mounted camera and head movement sensors to detect behaviors in mice. Used to monitor behaviors including eye position, whisking, and ear movements in unrestrained animals.Can be mounted in combination with neural implants for recording brain activity.Provides software Python package with functions for extracting and analyzing data recorded using camera. Lightweight head mounted camera system, head movement sensors, monitor eye position, monitor pupil dilation, monitor whisking, monitor pinna movements, monitor head motion, unrestrained mice, freely behaving mice, multichannel electrophysiology, OpenBehavior, Instrument is listed by: OpenBehavior
is related to: Mousecam
DOI:10.1016/j.neuron.2018.09.020 Free, Freely available SCR_021422 Mousecam 2026-09-05 06:29:39 0
Capactive Touch Sensor project
 
Resource Report
Resource Website
Capactive Touch Sensor project (RRID:SCR_021486) data or information resource, instrument resource, portal, project portal Project related to accurately counting and monitoring the behavior of organisms.Provides open source capacitive touch sensing system.Capacitive sensors are positioned to readily detect direct physical touches from rodent under investigation. Device,designed around capacitive touch sensor MPR121,accurately counts and monitors behavior of organisms. Capacitive touch sensing system, capacitive sensor, detect direct physical touch, rodent touch, capacitive touch sensor, MPR121 sensor, accurate count, organism behavior monitoring, OpenBehavior, Instrument is listed by: OpenBehavior DOI:10.1016/j.mex.2020.101024 Free, Freely available SCR_021486 Capactive Touch Sensor 2026-09-05 06:29:40 0
Two Armed Bandit Task project
 
Resource Report
Resource Website
1+ mentions
Two Armed Bandit Task project (RRID:SCR_021483) 2ABT data or information resource, instrument resource, portal, project portal Project related to training mice on task that requires continued updating of action/outcome relationships. Behavioral project includes task protocol and corresponding build instructions.Open source behavioral box used to train mice on task that requires continued updating of action/outcome relationships. Permits investigation of motivated behavior that requires flexible relationships between sensory stimuli and motor action. Project provided by Harvard Medical School scientists. Behavioral box, train mice, action continued updating, outcome relationships updating, motivated behavior investigation, flexible relationships, sensory stimuli, motor action, OpenBehavior, Instrument is listed by: OpenBehavior
has parent organization: Harvard Medical School; Massachusetts; USA
Free, Freely available SCR_021483 Two Armed Bandit Task 2026-09-05 06:29:40 2
FinchScope project
 
Resource Report
Resource Website
FinchScope project (RRID:SCR_021484) data or information resource, instrument resource, portal, project portal Project related to fluorescent imaging. Provides single photon fluorescent imaging microscope systems. System includes modular in vivo all optical neurophysiology rigs with transparent hardware, and acquisition and analysis software.Provide designs for 3D printed, lightweight, wireless capable microscope and motorized commutator, designed for multi month monitoring neural activity of zebra finches while they sing their courtship songs. Adapted for rodents and birds such as canaries. Single photon, fluorescent imaging, microscope systems, OpenBehavior, Instrument is listed by: OpenBehavior DOI:10.1088/1741-2552/aa6806 Free, Freely available SCR_021484 FinchScope 2026-09-05 06:29:40 0
UCLA Miniscope project
 
Resource Report
Resource Website
1+ mentions
UCLA Miniscope project (RRID:SCR_021480) data or information resource, instrument resource, portal, project portal Project related to fluorescence imaging to record neural activity in awake, freely behaving mice.Provided system is developed by UCLA scientists. Miniscope system includes Miniscope with single, flexible coaxial cable to carry power, control signals, and imaging data to open source Data Acquisition hardware and software. Open source miniature fluorescence microscope uses wide-field fluorescence imaging to record neural activity in awake, freely behaving mice. Miniature fluorescence microscope, wide field fluorescence imaging, record neural activity, activity record, OpenBehavior, Instrument is listed by: OpenBehavior
is related to: E-Scope
has parent organization: University of California at Los Angeles; California; USA
SCR_021480 UCLA Miniscope 2026-09-05 06:29:40 2
Ardbark project
 
Resource Report
Resource Website
Ardbark project (RRID:SCR_021494) data or information resource, instrument resource, portal, project portal Project related to fear conditioning studies.Includes hardware and software tools. Provides Arduino based device for producing naturalistic stimuli which can be integrated with existing commercial operant chambers with few modifications.. Stores custom made .wav files on SD card, interfaces with Med System and plays the .wav files through ceiling mounted speakers. Arduino based device, naturalistic stimuli, behavioral response, OpenBehavior, Instrument is listed by: OpenBehavior Free, Freely available SCR_021494 Ardbark 2026-09-05 06:29:40 0
Novel Gustometer for Human Taste Research project
 
Resource Report
Resource Website
Novel Gustometer for Human Taste Research project (RRID:SCR_021495) data or information resource, instrument resource, portal, project portal Project related to taste sensory system research in humans on behavioral, electrophysiological and hemodynamic activity levels.Provided system includes hardware and software tools. Gustometer, taste sensory system, behavioral activity level, electrophysiological activity level, hemodynamic activity level, OpenBehavior, Instrument is listed by: OpenBehavior DOI:10.3758/s13428-018-1145-1 Free, Freely available SCR_021495 Novel Gustometer for Human Taste Research 2026-09-05 06:29:40 0
Home Cage Automated Skilled Reaching Apparatus project
 
Resource Report
Resource Website
Home Cage Automated Skilled Reaching Apparatus project (RRID:SCR_021492) HASRA data or information resource, instrument resource, portal, project portal Project includes system for individualized training of group housed mice in single pellet reaching task.System allows user to host up to 5 mice in their home environment and automatically administer single pellet reaching test to those animals.Platform for training and assessing skilled reaching in mice with minimal need for experimenter handling. Individualized training, group housed mice, single pellet reaching task, assessing skilled reaching in mice, OpenBehavior, Instrument is listed by: OpenBehavior DOI:10.1523/eneuro.0242-20.2020 Free, Freely available SCR_021492 Home Cage Automated Skilled Reaching Apparatus 2026-09-05 06:29:40 0
DIY-NAMIC project
 
Resource Report
Resource Website
DIY-NAMIC project (RRID:SCR_021489) data or information resource, instrument resource, portal, project portal Project is related to measurement of complex phenotypes in homecage. Homecage automated open source behavioral testing sytem to enable high throughput 24h testing of many standard operant paradigms. Using Arduino platform and easily sourced inexpensive components system can display light cues and dispense liquid rewards and has nosepoke receptacles with infrared detectors for operant responses, within homecage.Method provided by Dartmouth College scientists. Behavioral testing system, homecage, Arduino platform, dispense liquid rewards, nosepoke receptacles, infrared detectors, OpenBehavior, Instrument is listed by: OpenBehavior
has parent organization: Dartmouth College; New Hampshire; USA
DOI:10.1523/eneuro.0160-20.2020 Free, Freely available SCR_021489 DIY-NAMIC 2026-09-05 06:29:40 0
CapTouch project
 
Resource Report
Resource Website
CapTouch project (RRID:SCR_021488) data or information resource, instrument resource, portal, project portal Project related to study learning and memory in preclinical research.Included tracking system for object recognition tasks provides standardization across experiments and labs.Automates scoring process using capacitive sensors, while providing validated 3D-printed objects in order to standardize object recognition to study learning and memory in preclinical research.Used for accurate measurement of interaction time during object recognition tasks. Tracking system, object recognition tasks, standardization across experiments, automated scoring process, capacitive sensors, standardize object recognition, study learning and memory, accurate measurement, interaction time, OpenBehavior., Instrument is listed by: OpenBehavior DOI:10.1523/eneuro.0310-20.2020 Free, Freely available SCR_021488 CapTouch 2026-09-05 06:29:40 0
Robotic Flower System for Bee Behavior project
 
Resource Report
Resource Website
Robotic Flower System for Bee Behavior project (RRID:SCR_021584) data or information resource, instrument resource, portal, project portal Portal provides system of robotic artificial flowers to study bumble bee behavior. System is designed to capture data when animal is feeding by placement of IR beams that are broken when engaged on flowers feeding mechanism and sends data to control unit.Developed by University of Oulu in Finland scientists. System includes control unit, separate artificial flowers, and personal computer. Control unit is to handle electronics of flowers, collect data from them, and to send data to computer. Flowers contain infrared sensor, their associated electronics, and electromechanical device that offers small, precise amount of sugar solution from reservoir. Computer runs software that controls refilling rate and data collection via the control unit. Circuit diagrams, parts list, and control software and source code are available in paper supplemental information. Robotic artificial flowers, study bumble bee behavior, animal feeding data, flowers feeding mechanism, OpenBehavior, Instrument is listed by: OpenBehavior DOI:10.1002/ece3.2062 Free, Freely available SCR_021584 Robotic Flower System for Bee Behavior 2026-09-05 06:29:42 0
Homecage Task Training and Mesoscale Imaging project
 
Resource Report
Resource Website
Homecage Task Training and Mesoscale Imaging project (RRID:SCR_021580) data or information resource, instrument resource, portal, project portal Project to build and use new generation of home cages with emphasis on training for simple headfixed tasks during simultaneous autonomous acquisition of mesoscale brain imaging data. Homecage platform for automated task training and mesoscale brain imaging for mice developed by University of British Columbia scientists. Instrument, automated task training, mesoscale brain imaging, mice, OpenBehavior is listed by: OpenBehavior
is related to: AutoHeadFix
has parent organization: University of British Columbia; British Columbia; Canada
DOI:10.7554/elife.55964 Free, Freely available SCR_021580 Homecage Task Training and Mesoscale Imaging 2026-09-05 06:29:42 0
OpenMV project
 
Resource Report
Resource Website
OpenMV project (RRID:SCR_021579) data or information resource, instrument resource, portal, project portal Portal provides system capable of frame differencing, color tracking, marker tracking, face detection, eye tracking, person detection (with TensorFlow Lite), and more. Supports very easy to use GUI, the OpenMV IDE. Instrument, frame differencing, color tracking, marker tracking, face detection, eye tracking, person detection, OpenBehavior is listed by: OpenBehavior
is related to: OpenMV
Free, Freely available SCR_021579 OpenMV system 2026-09-05 06:29:42 0
Tetroplater
 
Resource Report
Resource Website
Tetroplater (RRID:SCR_021578) data or information resource, instrument resource, portal, project portal Portal provides open source circuit for microwire tetrode gold plating. Circuit includes impedance meter and current generator for tetrode gold plating. Developed by University of Toyama scientist. Instrument, neuronal activity, recording neuronal activity, microwire tetrode gold plating, OpenBehavior is listed by: OpenBehavior DOI:10.3791/1098 Free, Freely available SCR_021578 2026-09-05 06:29:42 0
OpenSpritzer
 
Resource Report
Resource Website
OpenSpritzer (RRID:SCR_021575) data or information resource, instrument resource, portal, project portal Portal provides open hardware used in labs for administering picoliters of liquid to biological samples. Pressure ejection system developed by University of Sussex scientist for reliably delivering picolitre volumes. Instrument, administering picoliters of liquid, pressure ejection system, delivering picolitre volumes, OpenBehavior is listed by: OpenBehavior
has parent organization: University of Sussex; Brighton; United Kingdom
DOI:10.1038/s41598-017-02301-2 Free, Freely available SCR_021575 2026-09-05 06:29:42 0
Pulse Pal project
 
Resource Report
Resource Website
Pulse Pal project (RRID:SCR_021576) data or information resource, instrument resource, portal, project portal Portal provides open source, low cost, programmable pulse train generator for physiology and behavior. Device allows users to create and trigger software defined trains of voltage pulses with high temporal precision. Arduino powered device that generates precise sequences of voltage pulses for neural stimulation and stimulus control. Controlled either through its APIs in MATLAB, Python and C plus plus, or as stand-alone instrument using its oLED screen and clickable thumb joystick. Instrument, pulse train generator, Arduino powered device, neural stimulation, stimulus control, OpenBehavior is listed by: OpenBehavior
is related to: Pulse Pal
Free, Freely available SCR_021576 Pulse Pal system, Pulse Pal generator 2026-09-05 06:29:42 0

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