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https://edspace.american.edu/openbehavior/project/maple/

Portal related to measurement of fly social networks and behavior. Provides Drosophila handing robot that boasts modular design, allowing platform to both automate diverse phenotyping assays and aid with lab chores (e.g., collecting virgin female flies). MAPLE permits small part manipulator, USB digital camera, and fly manipulator to work simultaneously over platform of flies.

Proper citation: Modular Automated Platform for Large Scale Experiments project (RRID:SCR_021557) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/arcontrol/

Portal related to delivering stimuli and monitoring responses. Provided behavioral platform was developed by scientists from Huazhong University of Science and Technology, Wuhan, China. System uses Arduino UNO board and simple drive circuit along with stand-along GUI application. Experimental data is automatically recorded with built-in data acquisition function and entire behavioral schedule is stored within Arduino chip.

Proper citation: ArControl project (RRID:SCR_021556) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/snackclock/

Project related to feeding behavior.Provides device for dispensing pre-measured quantities of food at regular intervals throughout day. Device uses 24 hour clock movement to rotate dispenser wheel one revolution per day.

Proper citation: SnackClock (RRID:SCR_021554) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/automated-home-cage-functional-imaging/

Portal provides automated system for mesoscopic functional imaging that allows subjects to self initiate head fixation and imaging within home cage. Developed by University of British Columbia scientists. System for automated head fixation within mouse home cages.

Proper citation: Automated Home-Cage Functional Imaging project (RRID:SCR_021567) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/touchscreen-cognition-mousebytes/

Project related to cognitive testing method for rodents.Provides touchscreen operant platform for testing learning and memory in rats and mice.Includes device chambers that can be used to measure rodent behavior.Not open source device.

Proper citation: Touchscreen Cognition (RRID:SCR_021550) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/acrobat/

Project related to studying motor behavior. University of Washington in Seattle scientists have developed and published their device for training rats to perform modified center out task.

Proper citation: ACRoBaT (RRID:SCR_021546) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/multichromvisstim/

Project related to visual neuroscience.Provides spatial visual stimulator with arbitrary spectrum of light for visual neuroscientists.Open source, low cost visual stimulator which can be customized with up to 6 chromatic channels. Spectrum of light can be arbitrary and customizable to be adapted to different animal models based on their visual spectrum. Device details, including parts list and information for custom python library for generating visual stimuli (QDSpy), can be found in eLife publication.

Proper citation: Visual stimulator with customizable light spectra (RRID:SCR_021545) Copy   

•   Source: SciCrunch Registry

https://wavesurfer.janelia.org/

Open source software application for neurophysiology data acquisition and analysis. Program is based in MatLab, and evolved from earlier open source software package called Ephus.

Proper citation: Wave Surfer (RRID:SCR_021529) Copy   

•   Source: SciCrunch Registry

https://github.com/DepartmentofNeurophysiology/Matlab-Whisker-Tracker

Shared database of videos featuring juvenile and adult male rats and adult male mice exploring stationary objects.This dataset includes wide variety of experimental conditions including genetic, pharmacological, and sensory deprivation interventions to explore how active sensing behavior is modulated by different factors. Database of high speed videos of whisking behavior in freely moving rodents.Open source high speed infrared videography database to study principles of active sensing in freely navigating rodents.

Proper citation: Open Source Whisking Video Database (RRID:SCR_021407) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/spikeforest/

Project related to neural data analysis. Provides open-source and reproducible software suite that benchmarks performance of automated spike sorting algorithms across extensive, curated database of ground truth electrophysiological recordings, displaying results interactively on continuously updating website.

Proper citation: Spike Forest project (RRID:SCR_021472) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/pypreclin/

Project related to preprocessing of images. Provieds software Python tool to processes raw macaque fMRI images using algorithms embedded in automatic pipeline.

Proper citation: Pypreclin project (RRID:SCR_021473) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/mne-scan/

Project related to real time acquisition and processing of electrophysiological data.Provides software tool for acquisition and processing of electrophysiological data.

Proper citation: MNE Scan project (RRID:SCR_021470) Copy   

•   Source: SciCrunch Registry

https://github.com/fdechaumont/lmt-analysis

Software package for Live Mouse Tracker analysis. lmt-analysis provides all analysis tools needed to extract information from tracking performed by live mouse tracker.

Proper citation: Live Mouse Tracker analysis (RRID:SCR_021505) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/3dtracker/, http://www.3dtracker.org/

Project related to markerless computerized behavioral analysis for laboratory animals.Provides open source 3D video based behavioral analysis system for neuroscience. System includes open source software tool for 3D-video based markerless computerized behavioral analysis.

Proper citation: 3DTracker project (RRID:SCR_021440) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/lincom/

Project related to animal behavior in complex mazes.Provides software MATLAB package for linearization of place fields in complex mazes.

Proper citation: LinCoM project (RRID:SCR_021438) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/ethowatcher/

Project related to video tracking, detailed ethography, and extraction of kinematic variables from digital video files of laboratory animals.Provides computational tool developed at Federal University of Santa Catarina.

Proper citation: EthoWatcher project (RRID:SCR_021435) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/automated-rodent-tracker-art/

Project related to development of automated rodent tracking position and movement. Provides software tool to automatically track rodent.Used to track head movements, body movements and also aspects of body size.Identifies certain behaviours from video footage, such as rotations, moving forwards, interacting with objects and staying still.

Proper citation: Automated Rodent Tracker project (RRID:SCR_021432) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/deepsqueak/

Project related to rodent social communication through repertoire of ultrasonic vocalizations. Provides deep learning based system for quantification of Ultrasonic Vocalizations.Includes software MATLAB package for high throughput USV detection, classification, and analysis.

Proper citation: DeepSqueak project (RRID:SCR_021450) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/camera-control/

Portal provides Python based camera software GUI developed by Harvard University scientists. Open source software package that allows video to be recorded in sync with behavior. Python API to record video system timestamps from Imaging Source USB cameras.

Proper citation: Camera Control project (RRID:SCR_021569) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/rigbox/

Project related to streamlining behavioral neuroscience experiments.Provides open source software MATLAB toolbox for running behavioral neuroscience experiments and managing data.Used for probing neurons and behavior.

Proper citation: Rigbox project (RRID:SCR_021444) Copy   

•   Source: SciCrunch Registry