Searching the RRID Resource Information Network

Our searching services are busy right now. Please try again later

  • Register
X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

X

Leaving Community

Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.

No
Yes

Preparing word cloud

×

SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

Search

Type in a keyword to search

Filter by records added date
See new records

Options


Current Facets and Filters

  • Related Resources:niddk information network (dknet) (facet)

Facets


Recent searches

Snippet view Table view
Click the to add this resource to a Collection

189 Results - per page

Show More Columns | Download 189 Result(s)

Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
NCBI database of Genotypes and Phenotypes (dbGap)
 
Resource Report
Resource Website
500+ mentions
NCBI database of Genotypes and Phenotypes (dbGap) (RRID:SCR_002709) dbGaP data or information resource, database, service resource, data repository, storage service resource Database developed to archive and distribute clinical data and results from studies that have investigated interaction of genotype and phenotype in humans. Database to archive and distribute results of studies including genome-wide association studies, medical sequencing, molecular diagnostic assays, and association between genotype and non-clinical traits. clinical, trial, genotype, interaction, homology, cell, morphology, interaction, phenotype, molecular diagnosis, genetic recombination, gold standard, bio.tools is used by: International Genomics of Alzheimers Project
is used by: NIDDK Inflammatory Bowel Disease Genetics Consortium
is used by: NIH Heal Project
is used by: Genomic Data Commons Data Portal (GDC Data Portal)
is recommended by: National Library of Medicine
is recommended by: NIDDK Information Network (dkNET)
is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
is listed by: OMICtools
is listed by: re3data.org
is listed by: NIDDK Information Network (dkNET)
is listed by: bio.tools
is listed by: Debian
is related to: NIDDK Central Repository
is related to: eMERGE Network: electronic Medical Records and Genomics
is related to: Framingham Heart Study
is related to: PhenoExplorer
is related to: Chronic Renal Insufficiency Cohort Study
is related to: DbGaP Cleaner
is related to: Psychiatric Genomics Consortium
is related to: ISCA Consortium
is related to: Allen Institute for Brain Science
has parent organization: NCBI
is parent organization of: Resource for Genetic Epidemiology Research on Adult Health and Aging
NLM PMID:24297256
PMID:17898773
Restricted nif-0000-23342, OMICS_00263, biotools:dbgap, r3d100010788 http://www.ncbi.nlm.nih.gov/sites/entrez?db=gap, https://bio.tools/dbgap, https://doi.org/10.17616/R3GS4K SCR_002709 database of Genotypes and Phenotypes (dbGaP), dbGaP, NCBI, Database of Genotypes and Phenotypes 2026-08-13 09:26:38 736
GenBank
 
Resource Report
Resource Website
10000+ mentions
GenBank (RRID:SCR_002760) GB data or information resource, database, service resource, data repository, storage service resource NIH genetic sequence database that provides annotated collection of all publicly available DNA sequences for almost 280 000 formally described species (Jan 2014) .These sequences are obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects, including whole-genome shotgun (WGS) and environmental sampling projects. Most submissions are made using web-based BankIt or standalone Sequin programs, and GenBank staff assigns accession numbers upon data receipt. It is part of International Nucleotide Sequence Database Collaboration and daily data exchange with European Nucleotide Archive (ENA) and DNA Data Bank of Japan (DDBJ) ensures worldwide coverage. GenBank is accessible through NCBI Entrez retrieval system, which integrates data from major DNA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain information, and biomedical journal literature via PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bimonthly releases and daily updates of GenBank database are available by FTP. genetic sequence, dna sequence, human genetics, human genome, nucleotide sequence, nucleotide, dna, dna data bank, gene mapping, genetics, gold standard is used by: Structural Genomics Consortium
is used by: xFITOM
is used by: Transcriptional Regulatory Element Database
is recommended by: National Library of Medicine
is recommended by: NIDDK Information Network (dkNET)
is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
is listed by: OMICtools
is listed by: re3data.org
is listed by: CINERGI
is related to: High Throughput Genomic Sequences Division
is related to: DNA DataBank of Japan (DDBJ)
is related to: HS3D - Homo Sapiens Splice Sites Dataset
is related to: Influenza Virus Resource
is related to: TPA
is related to: Anopheles gambiae (African malaria mosquito) genome view
is related to: Nucleotide database
is related to: NCBI BioSample
is related to: NCBI Nucleotide
is related to: SpliceDB
is related to: MaizeGDB
is related to: NCBI Assembly Archive Viewer
is related to: DNA DataBank of Japan (DDBJ)
is related to: European Molecular Biology Laboratory
is related to: INSDC
is related to: NCBI Protein Database
is related to: TrED
is related to: Xenopus Gene Collection
is related to: Mammalian Gene Collection
is related to: Zebrafish Gene Collection
is related to: INSDC
is related to: NCBI Virus
is related to: Codon and Codon-Pair Usage Tables
has parent organization: NCBI
is parent organization of: NCBI Genome Survey Sequences Database
is parent organization of: NCBI Genome Survey Sequences Database
works with: OGDraw
works with: A plasmid Editor
works with: Webcutter
works with: merge-gbk-records
works with: PremierBiosoft Proteo IQ Software
works with: SARS-CoV-2-Sequences
works with: rentrez
works with: MiMeDB
NLM PMID:24217914
PMID:23193287
PMID:21071399
Free, Freely available nif-0000-02873, r3d100010528, OMICS_01650 https://doi.org/10.17616/R3D31X SCR_002760 , Gen Bank, GenBank 2026-08-13 09:26:38 64417
Mutant Mouse Resource and Research Center
 
Resource Report
Resource Website
1000+ mentions
Mutant Mouse Resource and Research Center (RRID:SCR_002953) MMRRC biomaterial supply resource, material resource, organism supplier National public repository system for mutant mice. Archives and distributes scientifically valuable spontaneous and induced mutant mouse strains and ES cell lines for use by biomedical research community. Includes breeding/distribution facilities and information coordinating center. Mice strains are cryopreserved, unless live colony must be established. Live mice are supplied from production colony, from colony recovered from cryopreservation, or via micro-injection of cell line into host blastocysts. MMRRC member facilities also develop technologies to improve handling of mutant mice, including advances in assisted reproductive techniques, cryobiology, genetic analysis, phenotyping and infectious disease diagnostics. RIN, Resource Information Network, stem cell, mouse strain, embryonic stem cell, embryonic stem cell line, cryopreserved, mutant mouse strain, mutant, transgenic, database, FASEB list, RRID Community Authority is used by: Integrated Animals
is listed by: One Mind Biospecimen Bank Listing
is listed by: Biositemaps
is listed by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
is listed by: NIDDK Research Resources
is listed by: NIDDK Information Network (dkNET)
is listed by: Resource Information Network
is affiliated with: MUGA
is affiliated with: MegaMUGA
is related to: Federation of International Mouse Resources
is related to: Mouse Mutagenesis Center for Developmental Defects
is related to: MGI strains
has parent organization: Jackson Laboratory
has parent organization: University of California at Davis; California; USA
has parent organization: University of Missouri; Missouri; USA
has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA
has parent organization: National Institutes of Health
is parent organization of: Deltagen and Lexicon Knockout Mice and Phenotypic Data Resource
provides: Knockout Mouse Project Repository
has organization facet: University of California at Davis Mutant Mouse Resource and Research Center
has organization facet: Mutant Mouse Resource and Research Center - University of North Carolina
has organization facet: Mutant Mouse Resource and Research Center - University of Missouri
has organization facet: Mutant Mouse Resource and Research Center - Jackson Laboratory
NIH Office of the Director U42 OD012210;
NIH Office of the Director U42 OD010918;
NIH Office of the Director U42 OD010924;
NIH Office of the Director U42 OD010921;
NCRR RR026296;
NIH Blueprint for Neuroscience Research
Restricted nif-0000-00045 SCR_002953 Mutant Mouse Regional Resource Center 2026-08-13 09:26:40 1079
ArrayExpress
 
Resource Report
Resource Website
5000+ mentions
ArrayExpress (RRID:SCR_002964) ArrayExpress data or information resource, database, service resource, data repository, storage service resource, catalog International functional genomics data collection generated from microarray or next-generation sequencing (NGS) platforms. Repository of functional genomics data supporting publications. Provides genes expression data for reuse to the research community where they can be queried and downloaded. Integrated with the Gene Expression Atlas and the sequence databases at the European Bioinformatics Institute. Contains a subset of curated and re-annotated Archive data which can be queried for individual gene expression under different biological conditions across experiments. Data collected to MIAME and MINSEQE standards. Data are submitted by users or are imported directly from the NCBI Gene Expression Omnibus. gold, standard, functional, genomics, data, collection, microarray, next, generation, sequencing, NGS, repository uses: MIAME
uses: MINSEQE
uses: Gene Expression Omnibus
is used by: NIF Data Federation
is used by: BioSample Database at EBI
is used by: Integrated Datasets
is recommended by: NIDDK Information Network (dkNET)
is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
is listed by: DataCite
is listed by: OMICtools
is listed by: re3data.org
is related to: DDBJ Omics Archive
is related to: MIAME
is related to: Gene Expression Atlas
is related to: Experimental Factor Ontology
is related to: Bgee: dataBase for Gene Expression Evolution
is related to: ISA Infrastructure for Managing Experimental Metadata
is related to: FlyMine
is related to: MAGE-TAB
is related to: Experimental Factor Ontology
is related to: Magic
is related to: ArrayExpress (R)
is related to: CancerMIRNome
has parent organization: European Bioinformatics Institute
European Union ;
SLING 226073;
European Commission ;
Gen2Phen 200754;
NHGRI P41 HG003619
PMID:23193272
PMID:21071405
Available Public or Private, Free, Available for download, The community can contribute to this resource, Acknowledgement requested, to access private data registration required OMICS_01023, nif-0000-30123, r3d100010222 http://www.ebi.ac.uk/microarray-as/ae, https://doi.org/10.17616/R3302G SCR_002964 , ArrayExpress, ArrayExpress - functional genomics data, ArrayExpress Archive 2026-08-13 09:26:46 7814
Japanese Genotype-phenotype Archive (JGA)
 
Resource Report
Resource Website
10+ mentions
Japanese Genotype-phenotype Archive (JGA) (RRID:SCR_003118) JGA data or information resource, database, service resource, data repository, storage service resource A service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The JGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the JGA. Once processed, all data are encrypted. The JGA accepts only de-identified data approved by JST-NBDC. The JGA implements access-granting policy whereby the decisions of who will be granted access to the data resides with the JST-NBDC. After data submission the JGA team will process the data into databases and archive the original data files. The accepted data types include manufacturer-specific raw data formats from the array-based and new sequencing platforms. The processed data such as the genotype and structural variants or any summary level statistical analyses from the original study authors are stored in databases. The JGA also accepts and distributes any phenotype data associated with the samples. For other human biological data, please contact the NBDC human data ethical committee. biomedical, genetic, phenotype, gene, data sharing, genotype is recommended by: NIDDK Information Network (dkNET)
is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
has parent organization: DNA DataBank of Japan (DDBJ)
has parent organization: NBDC - National Bioscience Database Center
Free, Freely available nlx_156741, r3d100010818 https://doi.org/10.17616/R3861Q http://trace.ddbj.nig.ac.jp/jga/, http://trace.ddbj.nig.ac.jp/jga/index_e.html SCR_003118 JGA, Japanese Genotype-phenotype Archive (JGA), Japanese Genotype-phenotype Archive 2026-08-13 09:26:42 37
EMDataResource.org
 
Resource Report
Resource Website
100+ mentions
EMDataResource.org (RRID:SCR_003207) EMDB, EMDataResource project portal, data or information resource, service resource, data repository, storage service resource, portal Portal for deposition and retrieval of cryo electron microscopy (3DEM) density maps, atomic models, and associated metadata. Global resource for 3 Dimensional Electron Microscopy structure data archiving and retrieval, news, events, software tools, data standards, validation methods. deposition, retrival, cryo, electron, microscopy, 3DEM, density, maps, atomic, model, metadata, structure is recommended by: NIDDK Information Network (dkNET)
is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
is listed by: 3DVC
is listed by: re3data.org
is affiliated with: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
is related to: Electron Microscopy Data Bank at PDBe (MSD-EBI)
is related to: PDBe - Protein Data Bank in Europe
is related to: National Center for Macromolecular Imaging
has parent organization: Rutgers University; New Jersey; USA
has parent organization: European Bioinformatics Institute
has parent organization: Baylor University; Texas; USA
NIGMS R01 GM079429;
BBSRC BBG022577
PMID:20935055
PMID:20888470
Free, Freely available r3d100010552, nif-0000-30776 https://doi.org/10.17616/R3T61P EMDataBank.org SCR_003207 EMDataResource, EMDResource, EMDB, EMDataBank.org, EMDataBank - Unified Data Resource for 3DEM, EMDataBank 2026-08-13 09:26:51 183
Database of Interacting Proteins (DIP)
 
Resource Report
Resource Website
100+ mentions
Database of Interacting Proteins (DIP) (RRID:SCR_003167) DIP data or information resource, analysis service resource, production service resource, database, service resource, data repository, storage service resource, data analysis service Database to catalog experimentally determined interactions between proteins combining information from a variety of sources to create a single, consistent set of protein-protein interactions that can be downloaded in a variety of formats. The data were curated, both, manually and also automatically using computational approaches that utilize the the knowledge about the protein-protein interaction networks extracted from the most reliable, core subset of the DIP data. Because the reliability of experimental evidence varies widely, methods of quality assessment have been developed and utilized to identify the most reliable subset of the interactions. This CORE set can be used as a reference when evaluating the reliability of high-throughput protein-protein interaction data sets, for development of prediction methods, as well as in the studies of the properties of protein interaction networks. Tools are available to analyze, visualize and integrate user's own experimental data with the information about protein-protein interactions available in the DIP database. The DIP database lists protein pairs that are known to interact with each other. By interact they mean that two amino acid chains were experimentally identified to bind to each other. The database lists such pairs to aid those studying a particular protein-protein interaction but also those investigating entire regulatory and signaling pathways as well as those studying the organization and complexity of the protein interaction network at the cellular level. Registration is required to gain access to most of the DIP features. Registration is free to the members of the academic community. Trial accounts for the commercial users are also available. blast, cellular network, ligand-receptor complex, ligand, network, protein, protein interaction, protein ligand, protein-protein interaction, protein receptor, receptor, sequence, interaction, regulatory pathway, signaling pathway, protein binding, bio.tools, FASEB list is recommended by: NIDDK Information Network (dkNET)
is recommended by: National Library of Medicine
is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
is listed by: OMICtools
is listed by: re3data.org
is listed by: NIH Data Sharing Repositories
is listed by: bio.tools
is listed by: Debian
is related to: IMEx - The International Molecular Exchange Consortium
is related to: IMEx - The International Molecular Exchange Consortium
is related to: MPIDB
is related to: TissueNet - The Database of Human Tissue Protein-Protein Interactions
is related to: InteroPorc
is related to: Interaction Reference Index
is related to: ConsensusPathDB
is related to: NIH Data Sharing Repositories
is related to: PSICQUIC Registry
is related to: Agile Protein Interactomes DataServer
has parent organization: University of California at Los Angeles; California; USA
NIGMS PMID:14681454 Free, Available for download, Freely available OMICS_01905, nif-0000-00569, r3d100010882, biotools:dip https://dip.doe-mbi.ucla.edu/dip/Main.cgi, https://bio.tools/dip, https://doi.org/10.17616/R3431F SCR_003167 , Database of Interacting Proteins, DIP, Database of Interacting Proteins (DIP) 2026-08-13 09:26:43 167
Structural Biology Grid
 
Resource Report
Resource Website
50+ mentions
Structural Biology Grid (RRID:SCR_003511) SBGrid data or information resource, service resource, data repository, storage service resource, computational hosting, data set Computing resources structural biologists need to discover the shapes of the molecules of life, it provides access to web-enabled structural biology applications, data sharing facilities, biological data sets, and other resources valuable to the computational structural biology community. Consortium includes X-ray crystallography, NMR and electron microscopy laboratories worldwide.SBGrid Service Center is located at Harvard Medical School.SBGrid's NIH-compliant Service Center supports SBGrid operations and provides members with access to Software Maintenance, Computing Access, and Training. Consortium benefits include: * remote management of your customized collection of structural biology applications on Linux and Mac workstations; * access to commercial applications exclusively licensed to members of the Consortium, such as NMRPipe, Schrodinger Suite (limited tokens) and the Incentive version of Pymol; remote management of supporting scientific applications (e.g., bioinformatics, computational chemistry and utilities); * access to SBGrid seminars and events; and * advice about hardware configurations, operating system installations and high performance computing. Membership is restricted to academic/non-profit research laboratories that use X-ray crystallography, 2D crystallography, NMR, EM, tomography and other experimental structural biology technologies in their research. Most new members are fully integrated with SBGrid within 2 weeks of the initial application. structure, x-ray crystallography, nuclear magnetic resonance, electron microscopy, structural biology, software application, computation, chemistry, meeting, software service, molecule, data sharing, biomedical is recommended by: NIDDK Information Network (dkNET)
is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
has parent organization: Harvard Medical School; Massachusetts; USA
NSF PMID:22514186 Membership is restricted to academic/non-profit research laboratories that use X-ray crystallography, 2D crystallography, NMR, EM, Tomography and other experimental structural biology technologies in their research., The community can contribute to this resource nif-0000-37641, r3d100010234 https://doi.org/10.17616/R3NS3R http://sbgrid.org/index.php SCR_003511 SBGrid Software Consortium, SBGrid Science Portal, SBGrid Consortium 2026-08-13 09:26:51 60
Cell Image Library (CIL)
 
Resource Report
Resource Website
10+ mentions
Cell Image Library (CIL) (RRID:SCR_003510) CIL data or information resource, database, service resource, data repository, storage service resource, image repository Freely accessible, public repository of vetted and annotated microscopic images, videos, and animations of cells from a variety of organisms, showcasing cell architecture, intracellular functionalities, and both normal and abnormal processes. Explore by Cell Process, Cell Component, Cell Type or Organism. The Cell includes images acquired from historical and modern collections, publications, and by recruitment. microscopic image repository, microscopic video repository, cell animation repository, bio.tools is used by: NIF Data Federation
is recommended by: National Library of Medicine
is recommended by: NIDDK Information Network (dkNET)
is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
is listed by: re3data.org
is listed by: bio.tools
is listed by: Debian
is related to: Cell Centered Database
is related to: Cell Centered Database
is related to: OME-TIFF Format
is related to: Integrated Manually Extracted Annotation
has parent organization: American Society for Cell Biology
has parent organization: University of California; San Diego;National Center for Microscopy and Imaging Research - NCMIR
has parent organization: University of California at San Diego; California; USA
is parent organization of: Biological Imaging Methods Ontology
NIGMS RC2 GM092708 PMID:34218671
PMID:34218673
Free, Freely available biotools:cellimagelibrary, nif-0000-37639, r3d100011601 http://www.cellimagelibrary.org/pages/about, https://bio.tools/cellimagelibrary, https://doi.org/10.17616/R3N92J SCR_003510 Cell Image Library. CIL, Cell Image Library (CIL) 2026-08-13 09:26:47 22

Can't find your Tool?

We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.

Can't find the RRID you're searching for? X
X
  1. NIDDK Information Network Resources

    Welcome to the dkNET Resources search. From here you can search through a compilation of resources used by dkNET and see how data is organized within our community.

  2. Navigation

    You are currently on the Community Resources tab looking through categories and sources that dkNET has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.

  3. Logging in and Registering

    If you have an account on dkNET then you can log in from here to get additional features in dkNET such as Collections, Saved Searches, and managing Resources.

  4. Searching

    Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:

    1. Use quotes around phrases you want to match exactly
    2. You can manually AND and OR terms to change how we search between words
    3. You can add "-" to terms to make sure no results return with that term in them (ex. Cerebellum -CA1)
    4. You can add "+" to terms to require they be in the data
    5. Using autocomplete specifies which branch of our semantics you with to search and can help refine your search
  5. Collections

    If you are logged into dkNET you can add data records to your collections to create custom spreadsheets across multiple sources of data.

  6. Facets

    Here are the facets that you can filter the data by.

  7. Further Questions

    If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.