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David Eccles 2019. Stranded Transcript Count Table Generation from Long Reads. protocols.io dx.doi.org/10.17504/protocols.io.xu4fnywCopy Citation Copied
URL: https://dx.doi.org/10.17504/protocols.io.xu4fnyw
Authors: David Eccles
Summary: This protocol is for comparing different samples at the transcript level, using long reads that are mapped to transcripts.Input(s): demultiplexed fastq files (see protocol Demultiplexing Nanopore reads with LAST), transcript reference fasta file, annotation fileOutput(s): transcript table, sorted by differential coverage, annotated with gene name / description / location
Affiliations: Malaghan Institute of Medical Research (NZ)
Version: 3
Publication Date: 2019
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Source: Protocols.io
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