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Alise Ponsero 2018. Run Centrifuge using iMicrobe. protocols.io dx.doi.org/10.17504/protocols.io.spuednwCopy Citation Copied
URL: https://dx.doi.org/10.17504/protocols.io.spuednw
Authors: Alise Ponsero
Group: iMicrobe, Metafunc course 2018
Summary: How to run Centrifuge version 1.0.4-beta (Kim et al. 2016) through the iMicrobe plaform.Centrifuge is a microbial classification engine that enables rapid, accurate, and sensitive taxonomic labeling of metagenomic reads and quantification of species. The system uses an indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index, optimized specifically for the metagenomic classification problem. More informations about centrifuge can be found here : https://ccb.jhu.edu/software/centrifuge/manual.shtml
Affiliations: University of Arizona
External URL: https://www.imicrobe.us/#/apps/71
Version: 1
Publication Date: 2018
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Source: Protocols.io
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