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David Eccles 2018. Stranded Transcript Count Table Generation from Long Reads. protocols.io dx.doi.org/10.17504/protocols.io.smuec6wCopy Citation Copied
URL: https://dx.doi.org/10.17504/protocols.io.smuec6w
Authors: David Eccles
Group: High molecular weight DNA extraction from all kingdoms
Summary: This protocol is for comparing two different samples at the transcript level, using long reads that are mapped to transcripts.Input(s): stranded fastq files (see steps 1-8 of Stranded Mapping from Long Reads), transcript reference fasta file, annotation fileOutput(s): transcript table, sorted by differential coverage, annotated with gene name / description / location
Affiliations: Malaghan Institute of Medical Research (NZ)
Version: 1
Publication Date: 2018
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Source: Protocols.io
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