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URL: http://athina.biol.uoa.gr/CAST/
Proper Citation: CAST (RRID:SCR_000628)
Description: A novel algorithm for low-complexity region detection and selective masking. The algorithm is based on multiple-pass Smith-Waterman comparison of the query sequence against twenty homopolymers with infinite gap penalties. The output of the algorithm is both the masked query sequence for further analysis, e.g. database searches, as well as the regions of low complexity.
Abbreviations: CAST
Synonyms: CAST - Compositional Bias Detection Algorithm
Resource Type: data analysis software, sequence analysis software, software resource, data processing software, software application
Defining Citation: PMID:11120681
Keywords: low-complexity region detection and selective masking, query sequence against twenty homopolymers, infinite gap penalties, masked query sequence,
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University of Athens Biophysics and Bioinformatics Laboratory |
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