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Community Structure-Activity Resource

Experimental datasets of crystal structures and binding affinities for diverse protein-ligand complexes. Some datasets are generated in house while others are collected from the literature or deposited by academic labs, national centers, and the pharmaceutical industry. For the community to improve their approaches, they need exceptional datasets to train scoring functions and develop new docking algorithms. They aim to provide the highest quality data for a diverse collection of proteins and small molecule ligands. They need input from the community in developing target priorities. Ideal targets will have many high-quality crystal structures (apo and 10-20 bound to diverse ligands) and affinity data for 25 compounds that range in size, scaffold, and logP. It is best if the ligand set has several congeneric series that span a broad range of affinity, with low nanomolar to mid-micromolar being most desirable. They prefer Kd data over Ki data over IC50 data (no % activity data). They will determine solubility, pKa, logP/logD data for the ligands whenever possible. They have augmented some donated IC50 data by determining Kon/Koff and ITC data.


Details

  • Resource Type: Resource, service resource, data set, data repository, storage service resource, data or information resource
  • Keywords: crystal structure, binding affinity, protein-ligand complex, protein, small molecule, ligand, compound
  • Resource ID: SCR_002206
  • Proper Citation: (Community Structure-Activity Resource, RRID:SCR_002206)
  • Parent Organization: University of Michigan; Michigan; USA
  • Related Condition:
  • Funding Agency: NIGMS
  • Relation: related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB), used by: NIF Data Federation
  • Reference:
  • Website Status: Last checked up
  • Alternate IDs: nlx_154720
  • Alternate URLs:
  • Old URLs:
  • v_uuid: 01bd8cca-0975-5ad0-98dc-ac1b30b855a0
License URL:
License Information: