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ArrayExpress

International functional genomics data collection generated from microarray or next-generation sequencing (NGS) platforms. Repository of functional genomics data supporting publications. Provides genes expression data for reuse to the research community where they can be queried and downloaded. Integrated with the Gene Expression Atlas and the sequence databases at the European Bioinformatics Institute. Contains a subset of curated and re-annotated Archive data which can be queried for individual gene expression under different biological conditions across experiments. Data collected to MIAME and MINSEQE standards. Data are submitted by users or are imported directly from the NCBI Gene Expression Omnibus.


Details

  • Resource Type: Resource, database, catalog, service resource, storage service resource, data repository, data or information resource
  • Keywords: gold, standard, functional, genomics, data, collection, microarray, next, generation, sequencing, NGS, repository
  • Resource ID: SCR_002964
  • Proper Citation: (ArrayExpress, RRID:SCR_002964)
  • Parent Organization: European Bioinformatics Institute
  • Related Condition:
  • Funding Agency: European Commission, European Union, Gen2Phen, NHGRI, SLING
  • Relation: related to: DDBJ Omics Archive, MIAME, Gene Expression Atlas, Experimental Factor Ontology, Bgee: a dataBase for Gene Expression Evolution, ISA Infrastructure for Managing Experimental Metadata, FlyMine, MAGE-TAB, Experimental Factor Ontology, Magic, ArrayExpress (R), Gene Expression Database, used by: NIF Data Federation, BioSample Database at EBI, Integrated Datasets, uses: MIAME, MINSEQE, Gene Expression Omnibus, recommended by: NIDDK Information Network (dkNET), NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases, listed by: DataCite, OMICtools, re3data.org
  • Reference: PMID:21071405, PMID:23193272
  • Website Status: Last checked up
  • Alternate IDs: nif-0000-30123, OMICS_01023
  • Alternate URLs: http://www.ebi.ac.uk/microarray-as/ae
  • Old URLs:
  • v_uuid: d7908162-a550-5edf-ba36-dfc5131ec059
License URL:
License Information: