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| Name | Authors | DOI | Group |
Summary |
Associated Publications |
RRIDs used | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Plaque Assay Protocol for Pseudoalteromonas Resource Report Resource Website |
Bonnie Poulos | DOI:10.17504/protocols.io.ek7bczn | VERVE Net, Sullivan Lab | Matthew Sullivan Lab, University of Arizona, The Ohio State University | 1 | 2016 | Bonnie Poulos 2016. Plaque Assay Protocol for Pseudoalteromonas. protocols.io https://dx.doi.org/10.17504/protocols.io.ek7bczn | 2021-04-15 09:16:07 | ||||
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DNA Extraction from sorted cells Resource Report Resource Website |
Virginia Rich | DOI:10.17504/protocols.io.c38yrv | VERVE Net, Sullivan Lab | Modified after V. Rich, 2/10/07: DNA extraction protocol from 25 mm 0.2 μm filters – Low-throughput, using DNeasy columns (based on lab Steripak filter extraction protocol and the Suzuki et al. 2001 protocol) | Matthew Sullivan Lab, University of Arizona/Ohio State University | 1 | 2016 | Virginia Rich 2016. DNA Extraction from sorted cells. protocols.io https://dx.doi.org/10.17504/protocols.io.c38yrv | 2021-04-15 09:16:08 | |||
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Cyanobacteria Trace Metal Mixture (CTMM) Resource Report Resource Website |
Matthew Sullivan Lab | DOI:10.17504/protocols.io.c8nzvd | VERVE Net, Sullivan Lab | Preparation of the trace metal mixture for addition to seawater for the cultivation of marine cyanobacteria, Prochlorococcus and Synechococcus | Matthew Sullivan Lab, University of Arizona, Ohio State University | 1 | 2015 | Matthew Sullivan Lab 2015. Cyanobacteria Trace Metal Mixture (CTMM). protocols.io https://dx.doi.org/10.17504/protocols.io.c8nzvd | 2021-04-15 09:16:09 | |||
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Lysis Buffer Resource Report Resource Website |
DeLong Lab | DOI:10.17504/protocols.io.c4ryv5 | VERVE Net, Sullivan Lab | Adapted from Steripak protocol, with addition of RNase. | Matthew Sullivan Lab, University of Arizona, Ohio State University | 1 | 2015 | DeLong Lab 2015. Lysis Buffer. protocols.io https://dx.doi.org/10.17504/protocols.io.c4ryv5 | 2021-04-15 09:16:05 | |||
|
Resuspension Buffer P1 Resource Report Resource Website |
Qiagen | DOI:10.17504/protocols.io.c49yz5 | VERVE Net, Sullivan Lab | This is a 0.05M Tris-Cl (pH 8.0), 0.01M EDTA resuspension buffer containing RNase A | Matthew Sullivan Lab, University of Arizona, The Ohio State University | http://people.mbi.ucla.edu/sumchan/qiagenbuffer.html | 1 | 2015 | Qiagen 2015. Resuspension Buffer P1. protocols.io https://dx.doi.org/10.17504/protocols.io.c49yz5 | 2021-04-15 09:16:09 | ||
|
g23 T4-type (myovirus) PCR Protocol Resource Report Resource Website |
Matthew Sullivan | DOI:10.17504/protocols.io.dfq3mv | VERVE Net, Sullivan Lab | Matthew Sullivan Lab, University of Arizona/Ohio State University | 1 | 2016 | Matthew Sullivan 2016. g23 T4-type (myovirus) PCR Protocol. protocols.io https://dx.doi.org/10.17504/protocols.io.dfq3mv | 2021-04-15 09:16:17 | ||||
|
RNAlater Recipe Resource Report Resource Website |
Rex Malmstrom | DOI:10.17504/protocols.io.c56y9d | VERVE Net, Sullivan Lab | This is a storage solution that stabilizes and protectsRNA while inactivating RNase | MIT/Matthew Sullivan Lab, University of Arizona, Ohio State University | 1 | 2015 | Rex Malmstrom 2015. RNAlater Recipe. protocols.io https://dx.doi.org/10.17504/protocols.io.c56y9d | 2021-04-15 09:16:18 | |||
|
Mapping Metagenomic Reads to Reference Sequences (Cyverse) Resource Report Resource Website |
Benjamin Bolduc | DOI:10.17504/protocols.io.gv2bw8e | VERVE Net, Sullivan Lab, iVirus | Mapping metagenomic reads from Ocean Sampling Day (OSD) 2014 against NCBI's ViralRefSeq alongside viral sequences identified from the Tara Oceans survey using VirSorter. | The Ohio State University | 3 | 2016 | Benjamin Bolduc 2016. Mapping Metagenomic Reads to Reference Sequences (Cyverse). protocols.io https://dx.doi.org/10.17504/protocols.io.gv2bw8e | 2021-04-15 09:16:17 | |||
|
Pseudoalteromonas Media Recipes Resource Report Resource Website |
Natalie Solonenko | DOI:10.17504/protocols.io.fz4bp8w | Sullivan Lab | Now includes media used for phosphate limitation experiments. | OSU | 1 | 2016 | Natalie Solonenko 2016. Pseudoalteromonas Media Recipes. protocols.io https://dx.doi.org/10.17504/protocols.io.fz4bp8w | 2021-04-15 09:16:15 | |||
|
0.5M NH4Cl Resource Report Resource Website |
Matthew Sullivan Lab | DOI:10.17504/protocols.io.c77zrm | VERVE Net, Sullivan Lab | Supplement to seawater for growth of cyanobacteria. | Matthew Sullivan Lab, University of Arizona, Ohio State University | 1 | 2015 | Matthew Sullivan Lab 2015. 0.5M NH4Cl. protocols.io https://dx.doi.org/10.17504/protocols.io.c77zrm | 2021-04-15 09:16:16 | |||
|
DNA extraction for HMW DNA Resource Report Resource Website |
Natalie Solonenko, Marie Burris | DOI:10.17504/protocols.io.6cbhasn | Sullivan Lab, Temperton Lab | This protocol is intended for extraction of HMW DNA from bacterial or viral samples. | The Ohio State University Department of Microbiology, The Ohio State University Department of Microbiology | 1 | 2019 | Natalie Solonenko, Marie Burris 2019. DNA extraction for HMW DNA. protocols.io https://dx.doi.org/10.17504/protocols.io.6cbhasn | 2021-04-15 09:16:38 | |||
|
Preparation of Tara Sample DNA From Iron-Chloride Precipitates Resource Report Resource Website |
Matt Sullivan Lab | DOI:10.17504/protocols.io.c24ygv | VERVE Net, Sullivan Lab | Matthew Sullivan Lab, University of Arizona, The Ohio State University | 1 | 2016 | Matt Sullivan Lab 2016. Preparation of Tara Sample DNA From Iron-Chloride Precipitates. protocols.io https://dx.doi.org/10.17504/protocols.io.c24ygv | 2021-04-15 09:16:22 | ||||
|
Transcriptomics During One-Step Growth Curves for Cellulophaga Phages Resource Report Resource Website |
Matthew Sullivan | DOI:10.17504/protocols.io.dem3c5 | VERVE Net, Sullivan Lab | Matthew Sullivan Lab, University of Arizona, Ohio State University | 1 | 2016 | Matthew Sullivan 2016. Transcriptomics During One-Step Growth Curves for Cellulophaga Phages. protocols.io https://dx.doi.org/10.17504/protocols.io.dem3c5 | 2021-04-15 09:16:47 | ||||
|
Cellulophaga 38:1 Lytic Gene PCR Resource Report Resource Website |
Matthew Sullivan | DOI:10.17504/protocols.io.dfz3p5 | VERVE Net, Sullivan Lab | Matthew Sullivan Lab, University of Arizona/Ohio State University | 1 | 2016 | Matthew Sullivan 2016. Cellulophaga 38:1 Lytic Gene PCR. protocols.io https://dx.doi.org/10.17504/protocols.io.dfz3p5 | 2021-04-15 09:16:47 | ||||
|
Long Read Viromics Amplification Library Preparation (VirION 2) Resource Report Resource Website |
Marie Burris, Natalie Solonenko, Olivier Zablocki, Ben Temperton | DOI:10.17504/protocols.io.5yug7ww | Sullivan Lab | The Ohio State University, The Ohio State University , The Ohio State University, University of Exeter | 1 | 2020 | Marie Burris, Natalie Solonenko, Olivier Zablocki, Ben Temperton 2020. Long Read Viromics Amplification Library Preparation (VirION 2). protocols.io https://dx.doi.org/10.17504/protocols.io.5yug7ww | 2021-04-15 09:16:24 | ||||
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0.1M EDTA-0.2M MgCl2-0.2M Ascorbate Buffer Resource Report Resource Website |
Seth John, Bonnie Poulos, Christine Schirmer | DOI:10.17504/protocols.io.c2yyfv | VERVE Net, Sullivan Lab | Preparation of iron chloride resuspension buffer using disodium EDTA dihydrate and magnesium chloride in Tris buffer. | Matthew Sullivan Lab, University of Arizona, Ohio State University, Matthew Sullivan Lab, University of Arizona, Ohio State University, Matthew Sullivan Lab, University of Arizona, Ohio State University | 1 | 2015 | Seth John, Bonnie Poulos, Christine Schirmer 2015. 0.1M EDTA-0.2M MgCl2-0.2M Ascorbate Buffer. protocols.io https://dx.doi.org/10.17504/protocols.io.c2yyfv | 2021-04-15 09:16:24 | |||
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NaCl Sodium Chloride Buffer Resource Report Resource Website |
Matthew Sullivan | DOI:10.17504/protocols.io.c64zgv | VERVE Net, Sullivan Lab | . | 1 | 2016 | Matthew Sullivan 2016. NaCl Sodium Chloride Buffer. protocols.io https://dx.doi.org/10.17504/protocols.io.c64zgv | 2021-04-15 09:16:45 | ||||
|
Transcriptomics During One-Step Growth Curves for Cellulophaga Phages Resource Report Resource Website |
Bonnie Poulos | DOI:10.17504/protocols.io.ek4bcyw | VERVE Net, Sullivan Lab | Matthew Sullivan Lab, University of Arizona, The Ohio State University | 1 | 2016 | Bonnie Poulos 2016. Transcriptomics During One-Step Growth Curves for Cellulophaga Phages. protocols.io https://dx.doi.org/10.17504/protocols.io.ek4bcyw | 2021-04-15 09:16:49 | ||||
|
0.025M NaH2PO4·H2O Resource Report Resource Website |
Matthew Sullivan Lab | DOI:10.17504/protocols.io.c8czsv | VERVE Net, Sullivan Lab | Supplement to seawater for growth of cyanobacteria. | Matthew Sullivan Lab, University of Arizona, Ohio State University | 1 | 2015 | Matthew Sullivan Lab 2015. 0.025M NaH2PO4·H2O. protocols.io https://dx.doi.org/10.17504/protocols.io.c8czsv | 2021-04-15 09:16:26 | |||
|
Titration of AmPure XP Beads for Removal of Fragments Resource Report Resource Website |
Matthew Sullivan | DOI:10.17504/protocols.io.c52y8d | VERVE Net, Sullivan Lab | Matthew Sullivan Lab, University of Arizona/Ohio State University | 1 | 2016 | Matthew Sullivan 2016. Titration of AmPure XP Beads for Removal of Fragments . protocols.io https://dx.doi.org/10.17504/protocols.io.c52y8d | 2021-04-15 09:16:54 |
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