Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
| Name | Authors | DOI | Group |
Summary |
Associated Publications |
RRIDs used | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Lessons learned from the resilience of public health systems, hospitals and their personnel to the COVID-19 pandemic: a scoping review protocol. Resource Report Resource Website |
Lola Traverson, Isadora Mathevet, Amanda Paes, Karla Paz, Andrea Andrade, Katarina Ost, Kate Zinszer, Valery Ridde | 10.17504/protocols.io.bikwkcxe | CEPED / IRD / Université de Paris, CEPED / IRD / Université de Paris, Fiocruz-PE, Fiocruz-PE, Fiocruz-PE, Université de Montréal, Université de Montréal, CEPED / IRD / Université de Paris | 1 | 2020 | Lola Traverson, Isadora Mathevet, Amanda Paes, Karla Paz, Andrea Andrade, Katarina Ost, Kate Zinszer, Valery Ridde 2020. Lessons learned from the resilience of public health systems, hospitals and their personnel to the COVID-19 pandemic: a scoping review protocol.. protocols.io dx.doi.org/10.17504/protocols.io.bikwkcxe | 2021-03-29 03:08:31 | |||||
|
Whole-body clearing of beetles by successive treatment of hydrogen peroxide and CUBIC reagents Resource Report Resource Website |
Monto Kuroda, Shinya Kuroda | 10.17504/protocols.io.ba33igqn | Optical Clearing of Tissue | Internal tissues of multicellular organisms cannot directly be seen because they contain pigments. For this reason, whole-body clearing methods have been developed and applied to mammals such as mice. Insects such as beetles, however, cannot be cleared by the mammalian method because of pigments such as melanin in their exoskeletons. In this study, we tried to develop a whole-body clearing method for large beetles. We first bleached the exoskeleton using a hydrogen peroxide treatment, and applied the the advanced Clear, Unobstructed Brain/Body Imaging Cocktails and Computational analysis (CUBIC) reagents to make the internal tissues transparent. The combined method of hydrogen peroxide and the advanced CUBIC allowed us to successfully perform whole-body clearing of the large beetles. | Keika High school, l, 5-6-6 Hakusan, Bunkyo-ku, 112-8612, Tokyo, Japan, Department of Biological Sciences, Graduate School of Science, University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan | 1 | 2020 | Monto Kuroda, Shinya Kuroda 2020. Whole-body clearing of beetles by successive treatment of hydrogen peroxide and CUBIC reagents. protocols.io dx.doi.org/10.17504/protocols.io.ba33igqn | 2021-03-29 03:08:31 | |||
|
Root Growth and Spatial Distribution Characteristics for Seedlings raised in Substrate and Transplanted Cotton Resource Report Resource Website |
Xiaoyu Zhi, Yabing Li, Yingchun Han, Lu Feng | 10.17504/protocols.io.js4cngw | Zhi X, Han Y, Li Y, Wang G, Feng L, Yang B, Fan Z, Lei Y, Du W, Mao S (2017) Root growth and spatial distribution characteristics for seedlings raised in substrate and transplanted cotton. PLoS ONE 12(12): e0190032. doi: 10.1371/journal.pone.0190032 | Institute of Cotton Research of Chinese Academy of Agricultural Sciences, Institute of Cotton Research of Chinese Academy of Agricultural Sciences, Institute of Cotton Research of Chinese Academy of Agricultural Sciences, Institute of Cotton Research of Chinese Academy of Agricultural Sciences | https://doi.org/10.1371/journal.pone.0190032 | 1 | 2017 | Xiaoyu Zhi, Yabing Li, Yingchun Han, Lu Feng 2017. Root Growth and Spatial Distribution Characteristics for Seedlings raised in Substrate and Transplanted Cotton. protocols.io dx.doi.org/10.17504/protocols.io.js4cngw | 2021-03-29 03:08:31 | |||
|
Sandwich ELISA Protocol Resource Report Resource Website |
Sam Li | 10.17504/protocols.io.98xh9xn | BioLegend | BioLegend | https://www.biolegend.com/protocols/sandwich-elisa-protocol/4268/ | 3 | 2019 | Sam Li 2019. Sandwich ELISA Protocol. protocols.io dx.doi.org/10.17504/protocols.io.98xh9xn | 2021-03-29 03:08:30 | |||
|
Glycerol Stock Resource Report Resource Website |
Alan J. Cone | 10.17504/protocols.io.dbe2jd | Ju Lab | Method to create a long-term stable store of organisms. Especially useful if you want to store already transformed versions of organisms to aid in future experiments. | Wright State University | 1 | 2015 | Alan J. Cone 2015. Glycerol Stock. protocols.io dx.doi.org/10.17504/protocols.io.dbe2jd | 2021-03-29 03:08:30 | |||
|
Collection and Post-Surgical Excision of Human Kidney Tissue through the Cooperative Human Tissue Network Resource Report Resource Website |
Maya Brewer, Jamie Allen, Elizabeth Neumann, Agnes Fogo, Raymond Harris, Danielle Gutierrez, Mark De Caestecker, Jeff Spraggins | 10.17504/protocols.io.7gehjte | VU Biomolecular Multimodal Imaging Center, Human BioMolecular Atlas Program (HuBMAP) Method Development Community | Scope:Obtain kidney tissue and metadata about tissue location within the whole kidney for storage and analysis.Expected Outcome:A portion of kidney tissue and a series of images that provide information about the original location of the smaller tissue. | Vanderbilt University, Vanderbilt University, Vanderbilt University, Vanderbilt University Medical Center, Vanderbilt University Medical Center, Vanderbilt University, Division of Nephrology, Vanderbilt University Medical Center, Vanderbilt University | 1 | 2019 | Maya Brewer, Jamie Allen, Elizabeth Neumann, Agnes Fogo, Raymond Harris, Danielle Gutierrez, Mark De Caestecker, Jeff Spraggins 2019. Collection and Post-Surgical Excision of Human Kidney Tissue through the Cooperative Human Tissue Network. protocols.io dx.doi.org/10.17504/protocols.io.7gehjte | 2021-03-29 03:08:31 | |||
|
QUESTIONNAIRE ABOUT ECO METHOD IMPLEMENTATION IN THE UNIVERSITY Resource Report Resource Website |
Juan Jesus Torres-Gordillo | 10.17504/protocols.io.bhp5j5q6 | The purpose of this questionnaire is to know the impact of the implementation of the ECO method in the University. It is part of an innovation project, entitled ECO in Higher Education. Teaching inspired by the environment, funded by the University of Seville's 3rd Teaching Plan. It is intended for teachers who have been part of the innovation project. The data collected will be analysed to be used in the final report, as well as in some conference communications or journal articles.The questionnaire consists of 29 questions, divided into three blocks: 12 initial questions on demographic data, 9 closed-ended questions with four options and 8 open-ended questions. For open-ended questions, we ask that you answer in detail and as explicitly as possible.Each teacher is requested to complete one questionnaire per course in which they have implemented the ECO method. Similarly, if there have been two teachers in a shared course, each must fulfill, from their experience, a separate questionnaire.Thank you very much for your collaboration.Prof. Juan-Jesús Torres-GordilloUniversity of Seville (Spain) | Torres-Gordillo J, Melero-Aguilar N, García-Jiménez J (2020) Improving the university teaching-learning process with ECO methodology: Teachers’ perceptions. PLoS ONE 15(8): e0237712. doi: 10.1371/journal.pone.0237712 | Universidad de Sevilla | https://doi.org/10.1371/journal.pone.0237712 | 1 | 2020 | Juan Jesus Torres-Gordillo 2020. QUESTIONNAIRE ABOUT ECO METHOD IMPLEMENTATION IN THE UNIVERSITY. protocols.io dx.doi.org/10.17504/protocols.io.bhp5j5q6 | 2021-03-29 03:08:31 | ||
|
PNGase F Mixture 1 Resource Report Resource Website |
New England Biolabs | 10.17504/protocols.io.cqgvtv | New England Biolabs (NEB) | New England Biolabs | https://www.neb.com/protocols/2014/07/31/pngase-f-protocol | 1 | 2015 | New England Biolabs 2015. PNGase F Mixture 1. protocols.io dx.doi.org/10.17504/protocols.io.cqgvtv | 2021-03-29 03:08:31 | |||
|
BIOL 354W - Research Methods in Advance Microbiology Resource Report Resource Website |
Rosa Leon | 10.17504/protocols.io.m3dc8i6 | Leon Zayas Lab | This protocol series will guide students through the experience of analyzing metagenomic data. | Willamette University | 8 | 2018 | Rosa Leon 2018. BIOL 354W - Research Methods in Advance Microbiology. protocols.io dx.doi.org/10.17504/protocols.io.m3dc8i6 | 2021-03-29 03:08:31 | |||
|
Protocols for Agarose Preparation Using Denville LE Agarose Resource Report Resource Website |
Denville Scientific | 10.17504/protocols.io.gskbwcw | Denville Scientific, Inc. | Denville LE Agarose is an all purpose agarose for routine nucleic acid electrophoresis of fragments between 500bp-23,000 bp.Denville LE Agarose has no detectable DNase or RNase activity.Please refer to the appropriate protocol below, depending on whether you are using a hot plate or a microwave. | https://www.denvillescientific.com/products/agarose | 1 | 2016 | Denville Scientific 2016. Protocols for Agarose Preparation Using Denville LE Agarose. protocols.io dx.doi.org/10.17504/protocols.io.gskbwcw | 2021-03-29 03:08:31 | |||
|
Isolate prokaryotes from sponge tissue (SAP) Resource Report Resource Website |
Martin Thomas Jahn | 10.17504/protocols.io.u8vezw6 | hostmicrobeprotocols | Protocoll to create a fixed suspension of sponge associated prokaryotes (SAP) from sponge tissue.This can serve as the basis for Fluorescence in situ hybridisation and/or cell sorting.This protocol was tested for different sponge species but might also be adapted to other organisms (let others know)The protocol was modified from :Fieseler L, Horn M, Wagner M, Hentschel U. (2006) Discovery of the novel candidate phylum "Potibactetia" in marine sponges (vol 70, pg 3724, 2004). Applied and Environmental Microbiology;72(8):5677-.PMID:15184179 DOI:10.1128/AEM.70.6.3724-3732.2004 | CRC1182 | 1 | 2019 | Martin Thomas Jahn 2019. Isolate prokaryotes from sponge tissue (SAP). protocols.io dx.doi.org/10.17504/protocols.io.u8vezw6 | 2021-03-29 03:08:31 | |||
|
NS-Forest version 2 Resource Report Resource Website |
Brian Aevermann, Richard Scheuermann | 10.17504/protocols.io.un7evhn | Human Cell Atlas Method Development Community | NS-Forest is an alogrithm that determines the minimum set of genes that are necessary and sufficient to define a cell type cluster derived from single cell RNAseq expression data. Development and stable releases can be found at : https://github.com/JCVenterInstitute/NSForest | J. Craig Venter Institute, J. Craig Venter Institute | 1 | 2018 | Brian Aevermann, Richard Scheuermann 2018. NS-Forest version 2. protocols.io dx.doi.org/10.17504/protocols.io.un7evhn | 2021-03-29 03:08:32 | |||
|
Yale - Creatine Kinase Activity Resource Report Resource Website |
John Stack, Gary Cline | 10.17504/protocols.io.y3sfyne | Mouse Metabolic Phenotyping Centers | Procedure used to determine the creatine kinase activity in blood , serum, and plasma. Creatine kinase activity is measured by the enzymatically coupled reactions of creatine kinase, hexokinase, and glucose-6-P dehydrogenase. The rate of NADPH formation is monitored by the change in absorbance at 340 nm. | Yale University, Yale University | https://mmpc.org/shared/document.aspx?id=219&docType=Protocol | 1 | 2019 | John Stack, Gary Cline 2019. Yale - Creatine Kinase Activity. protocols.io dx.doi.org/10.17504/protocols.io.y3sfyne | 2021-03-29 03:08:32 | ||
|
Adapted protocol to extract total RNA using TRIzol® (Invitrogen, Thermo) Resource Report Resource Website |
Talita Gagliardi | 10.17504/protocols.io.w8vfhw6 | Total RNA extraction using TRizol reagent.Attention: for nasopharyngeal aspirates, we use regular TRizol reagent in this assay, but for blood samples it is better to use a special one as "TRizol LS". | Matsuno AK, Gagliardi TB, Paula FE, Luna LKS, Jesus BLS, Stein RT, Aragon DC, Carlotti APCP, Arruda E (2019) Human coronavirus alone or in co-infection with rhinovirus C is a risk factor for severe respiratory disease and admission to the pediatric intensive care unit: A one-year study in Southeast Brazil. PLoS ONE 14(6): e0217744. doi: 10.1371/journal.pone.0217744 | University of Maryland, College Park | https://doi.org/10.1371/journal.pone.0217744 | 1 | 2019 | Talita Gagliardi 2019. Adapted protocol to extract total RNA using TRIzol® (Invitrogen, Thermo). protocols.io dx.doi.org/10.17504/protocols.io.w8vfhw6 | 2021-03-29 03:08:32 | ||
|
Digestion BclI Resource Report Resource Website |
Antoine ZILLER | 10.17504/protocols.io.ecvbaw6 | Phd student | 1 | 2016 | Antoine ZILLER 2016. Digestion BclI. protocols.io dx.doi.org/10.17504/protocols.io.ecvbaw6 | 2021-03-29 03:08:31 | |||||
|
Transient tranfection of unicellular relative of animals, Creolimax fragrantissima, using Lonza Nucleofector Resource Report Resource Website |
Aleksandra Kozyczkowska | 10.17504/protocols.io.r65d9g6 | Protist Research to Optimize Tools in Genetics (PROT-G), Multicellgenomelab, Emerging Organisms for Biology | Institut of Evolutionary Biology (UPF-CSIC) | 1 | 2018 | Aleksandra Kozyczkowska 2018. Transient tranfection of unicellular relative of animals, Creolimax fragrantissima, using Lonza Nucleofector. protocols.io dx.doi.org/10.17504/protocols.io.r65d9g6 | 2021-03-29 03:08:32 | ||||
|
Study Population (Part 4 of Phase 3 study of Vaccine Candidate for COVID-19) Resource Report Resource Website |
Chris Ockenhouse, Chris Gast, Renee Holt, Jorge Flores | 10.17504/protocols.io.bj5xkq7n | Coronavirus Method Development Community | This is Part 4 of "Phase 3 randomized, double-blinded, placebo-controlled trial to evaluate the safety, immunogenicity, and efficacy of Vaccine Candidate against COVID-19 in adults > 18 years of age"This generic Phase 3 protocol was developed by the PATH team with support of the Bill and Melinda Gates Foundation. The aim of the collection is to share recommended best practices in designing and implementing a Phase 3 study of a COVID-19 vaccine candidate. As Phase 3 trials of different Vaccine Candidates proceed around the world, following the same protocols will ensure consistency and comparability of the Phase 3 trial results.Please note that this is an evolving document, to be versioned and updated, based on community feedback and new data. | Center for Vaccine Innovation and Access, PATH (Washington D.C. and Seattle, Washington), Center for Vaccine Innovation and Access, PATH (Washington D.C. and Seattle, Washington), Center for Vaccine Innovation and Access, PATH (Washington D.C. and Seattle, Washington), Center for Vaccine Innovation and Access, PATH (Washington D.C. and Seattle, Washington) | 1 | 2020 | Chris Ockenhouse, Chris Gast, Renee Holt, Jorge Flores 2020. Study Population (Part 4 of Phase 3 study of Vaccine Candidate for COVID-19). protocols.io dx.doi.org/10.17504/protocols.io.bj5xkq7n | 2021-03-29 03:08:33 | |||
|
An analytical pipeline of assembly and annotation of the Betta splendens genome. Resource Report Resource Website |
Xin Liu | 10.17504/protocols.io.qq9dvz6 | GigaScience Press, BGI | From here, You can learn about the detail methods of genome assembly and gene annotation of the Betta splendens genome. | BGI-Shenzhen | 1 | 2018 | Xin Liu 2018. An analytical pipeline of assembly and annotation of the Betta splendens genome.. protocols.io dx.doi.org/10.17504/protocols.io.qq9dvz6 | 2021-03-29 03:08:30 | |||
|
Trace Metal Solution for ESAW Media Resource Report Resource Website |
Ashley Humphrey | 10.17504/protocols.io.gdabs2e | Protist Research to Optimize Tools in Genetics (PROT-G), The Aquatic Microbial Ecology Research Group - AMERG (The Buchan, Zinser and Wilhelm labs) | Trace metals solution to be used in ESAW Media for Marine Phytoplankton | University of Tennessee, Knoxville | 1 | 2016 | Ashley Humphrey 2016. Trace Metal Solution for ESAW Media. protocols.io dx.doi.org/10.17504/protocols.io.gdabs2e | 2021-03-29 03:08:33 | |||
|
MG_HW6: Gene Calls with Prodigal Resource Report Resource Website |
James Thornton | 10.17504/protocols.io.f4ubqww | Hurwitz Lab, MetaFunc Course | This protocol provides the procedure to generate gene calls on your contigs using Prodigal. | Hurwitz Lab | 2 | 2016 | James Thornton 2016. MG_HW6: Gene Calls with Prodigal. protocols.io dx.doi.org/10.17504/protocols.io.f4ubqww | 2021-03-29 03:08:33 |
Can't find your Protocol?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. If you want to find a specific protocol and you know the DOI of the protocol already, it's easier to enter a DOI to search. You can refine the search results using Facets on the left side of the search results page. If you are on the table view, you can also search in a specific column by clicking the column title and enter the keywords.
If you still could not find your protocol in the search results, please help us by adding it into the system — it's easy. Create and publish your protocols at Protocols.io.
Welcome to the dkNET Resources search. From here you can search through a compilation of resources used by dkNET and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that dkNET has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on dkNET then you can log in from here to get additional features in dkNET such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into dkNET you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
Email: info_at_ dknet.org
