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Integrated Animals is a virtual database currently indexing available animal strains and mutants from: AGSC (Ambystoma), BCBC (mice), BDSC (flies), European Xenopus Resource Center (frog), The National Xenopus Resource (frog), Xenopus Express (frog), CWRU Cystic Fibrosis Mouse Models (mice), DGGR (flies), FlyBase (flies), IMSR (mice), MGI (mice), MMRRC (mice), NSRRC (pig), RGD (rats), Sperm Stem Cell Libraries for Biological Research (rats), Tetrahymena Stock Center (Tetrahymena), WormBase (worms), XGSC (Xiphophorus), ZFIN (zebrafish), and ZIRC (zebrafish). Note, the IMSR data is linked, but users may need to re-execute the search if the top mouse is not returned properly.
Note: BCBC is no longer in service, so the links may not be functional.
http://www.wormbase.org/db/get?name=WBStrain00062841
Source Database: WormBase (WB)
Affected Genes: WBGene00001135(eat-4)
Genomic Alteration: WBGene00001135(eat-4)
Availability: unknown
Source References: EMPTY
Synonyms: Cbr-eat-4(ot1371[Cbr-eat-4::T2A::GFP::H2B]) III.
Notes: Made_by: Itai Toker|"T2A::GFP::H2B tag inserted before STOP codon of endogenous Cbr-eat-4 locus using CRISPR/Cas9. Generated in C. briggsae AF16 background. Reference: Toker IA, et al. bioRxiv 2024.11.23.624988; doi: https:"
Proper citation: RRID:WB-STRAIN:WBStrain00062841 Copy
http://www.wormbase.org/db/get?name=WBStrain00062842
Source Database: WormBase (WB)
Affected Genes: WBGene00006762(unc-25)
Genomic Alteration: WBGene00006762(unc-25)
Availability: unknown
Source References: EMPTY
Synonyms: Cbr-unc-25(ot1373[Cbr-unc-25::T2A::GFP::H2B]) III.
Notes: Made_by: Itai Toker|"T2A::GFP::H2B tag inserted before STOP codon of endogenous Cbr-unc-25 locus using CRISPR/Cas9. Generated in C. briggsae AF16 background. Reference: Toker IA, et al. bioRxiv 2024.11.23.624988; doi: https:"
Proper citation: RRID:WB-STRAIN:WBStrain00062842 Copy
http://www.wormbase.org/db/get?name=WBStrain00047050
Source Database: WormBase (WB)
Availability: unknown
Source References: PMID:25783854
Synonyms: EMPTY
Notes: Whole genomic DNA extraction was carried out on single worm. Flow cell preparation and paired end read sequencing were carried out on GAIIx and HiSeq2000 sequencers (Illumina Inc, San Diego CA). Sequence reads were aligned with the bwa and stampy aligner and genotypes were called with GenomeAnalysisTK(Van der Auwera et al. 2002)
Proper citation: RRID:WB-STRAIN:WBStrain00047050 Copy
http://www.wormbase.org/db/get?name=WBStrain00047051
Source Database: WormBase (WB)
Availability: unknown
Source References: PMID:25783854
Synonyms: EMPTY
Notes: Whole genomic DNA extraction was carried out on single worm. Flow cell preparation and paired end read sequencing were carried out on GAIIx and HiSeq2000 sequencers (Illumina Inc, San Diego CA). Sequence reads were aligned with the bwa and stampy aligner and genotypes were called with GenomeAnalysisTK(Van der Auwera et al. 2002)
Proper citation: RRID:WB-STRAIN:WBStrain00047051 Copy
http://www.wormbase.org/db/get?name=WBStrain00047053
Source Database: WormBase (WB)
Availability: unknown
Source References: PMID:25783854
Synonyms: EMPTY
Notes: Whole genomic DNA extraction was carried out on single worm. Flow cell preparation and paired end read sequencing were carried out on GAIIx and HiSeq2000 sequencers (Illumina Inc, San Diego CA). Sequence reads were aligned with the bwa and stampy aligner and genotypes were called with GenomeAnalysisTK(Van der Auwera et al. 2002)
Proper citation: RRID:WB-STRAIN:WBStrain00047053 Copy
http://www.wormbase.org/db/get?name=WBStrain00047054
Source Database: WormBase (WB)
Availability: unknown
Source References: EMPTY
Synonyms: EMPTY
Notes: Duplicate of WBStrain00042097 with zero padding.
Proper citation: RRID:WB-STRAIN:WBStrain00047054 Copy
http://www.wormbase.org/db/get?name=WBStrain00040956
Source Database: WormBase (WB)
Affected Genes: WBGene00000348()
Genomic Alteration: WBGene00000348()
Availability: available
Source References: EMPTY
Synonyms: Cbr-him(s1290).
Alternate IDs: WB-STRAIN:BW1850, CGC_BW1850
Notes: C. briggsae strain. Hermaphrodites are variably self-sterile, which is overcome by mating to males of the same genotype. From BC1991.|"Non-elegans Strain"
Proper citation: RRID:WB-STRAIN:WBStrain00040956 Copy
http://www.wormbase.org/db/get?name=WBStrain00040953
Source Database: WormBase (WB)
Affected Genes: WBGene00000351()
Genomic Alteration: WBGene00000351()
Availability: available
Source References: EMPTY
Synonyms: Cbr-unc(s1275).
Alternate IDs: WB-STRAIN:BC1977, CGC_BC1977
Notes: C. briggsae strain. Unc-tends to coil.|"Made_by: S. Bird"|"Non-elegans Strain"
Proper citation: RRID:WB-STRAIN:WBStrain00040953 Copy
http://www.wormbase.org/db/get?name=WBStrain00040952
Source Database: WormBase (WB)
Affected Genes: WBGene00000350()
Genomic Alteration: WBGene00000350()
Availability: available
Source References: EMPTY
Synonyms: Cbr-unc(s1270).
Alternate IDs: WB-STRAIN:BC1972, CGC_BC1972
Notes: C. briggsae strain. Twitcher. Hets twitch only in prescence of nicotine.|"Made_by: S. Bird"|"Non-elegans Strain"
Proper citation: RRID:WB-STRAIN:WBStrain00040952 Copy
http://www.wormbase.org/db/get?name=WBStrain00040964
Source Database: WormBase (WB)
Affected Genes: WBGene00000329(Cbr-fem-3)|WBGene00001413(fem-3)
Genomic Alteration: WBGene00000329(Cbr-fem-3), WBGene00001413(fem-3)
Availability: available
Source References: EMPTY
Synonyms: Cbr-fem-3(nm63) IV.
Alternate IDs: WB-STRAIN:CP87, CGC_CP87
Notes: Made_by: Robin Cook Hill|"Non-elegans Strain"|"XO are self-fertile hermaphrodites with low brood size and some somatic gonad defects. XX animals have normal brood size."
Proper citation: RRID:WB-STRAIN:WBStrain00040964 Copy
http://www.wormbase.org/db/get?name=WBStrain00040966
Source Database: WormBase (WB)
Affected Genes: WBGene00006843(unc-119)
Genomic Alteration: WBGene00006843(unc-119)
Availability: available
Source References: EMPTY
Synonyms: Cbr-unc-119(nm67) III.
Alternate IDs: WB-STRAIN:CP99, CGC_CP99
Notes: Derived from AF16. Outcrossed >6x to AF16. Unc, slightly Dpy, no dauer formation (similar to C. elegans unc-119). nm67 is a deletion (827 bp) in Cbr-119 begining in exon 1 and ending 3' of exon 4. Reference: Liu Q, et al. Development. 2012 Apr;139(8):1509-21.|"Non-elegans Strain"
Proper citation: RRID:WB-STRAIN:WBStrain00040966 Copy
http://www.wormbase.org/db/get?name=WBStrain00040965
Source Database: WormBase (WB)
Affected Genes: WBGene00000328(Cbr-fem-2)|WBGene00000329(Cbr-fem-3)|WBGene00001412(fem-2)|WBGene00001413(fem-3)
Genomic Alteration: WBGene00000328(Cbr-fem-2), WBGene00000329(Cbr-fem-3), WBGene00001412(fem-2), WBGene00001413(fem-3)
Availability: available
Source References: EMPTY
Synonyms: Cbr-fem-2(nm27) III; Cbr-fem-3(nm63) IV.
Alternate IDs: WB-STRAIN:CP89, CGC_CP89
Notes: Made_by: Robin Cook Hill|"Non-elegans Strain"|"XX are self-fertile hermaphrodites."
Proper citation: RRID:WB-STRAIN:WBStrain00040965 Copy
http://www.wormbase.org/db/get?name=WBStrain00040960
Source Database: WormBase (WB)
Availability: available
Source References: EMPTY
Synonyms: Cbr-dpy-?(nm3) X.
Alternate IDs: WB-STRAIN:CP3, CGC_CP3
Notes: Non-elegans Strain|"X-linked Dpy."
Proper citation: RRID:WB-STRAIN:WBStrain00040960 Copy
http://www.wormbase.org/db/get?name=WBStrain00040962
Source Database: WormBase (WB)
Affected Genes: WBGene00000328(Cbr-fem-2)|WBGene00001412(fem-2)
Genomic Alteration: WBGene00000328(Cbr-fem-2), WBGene00001412(fem-2)
Availability: available
Source References: EMPTY
Synonyms: Cbr-fem-2(nm27) III.
Alternate IDs: WB-STRAIN:CP36, CGC_CP36
Notes: Made_by: Robin Cook Hill|"Non-elegans Strain"|"WBStrain mapped, WBPaper00060328 added based on AFP_Strain data."|"XX animals have no obvious phenotype: self-fertile with normal brood size. XO animals are self-fertile hermaphrodites with low brood size and some somatic gonad defects. Cbr-fem-2/+ XO animals show late-onset germline feminization. AF16 was the parental strain."
Proper citation: RRID:WB-STRAIN:WBStrain00040962 Copy
http://www.wormbase.org/db/get?name=WBStrain00040935
Source Database: WormBase (WB)
Availability: available
Source References: PMID:15702348, PMID:17339204, PMID:18524955, PMID:18650807, PMID:19077305, PMID:20088888, PMID:31182018, PMID:31282863, PMID:32010883, PMID:31307392, PMID:31998863, PMID:32160236, PMID:32550482, PMID:32550518, PMID:32851977, PMID:33319173, PMID:33911106, PMID:33976151, PMID:34585102, PMID:37192367, PMID:37474586, PMID:37541249, PMID:37626289, PMID:38374083, PMID:38547054, PMID:38719808, PMID:38880992, PMID:39303031, PMID:39554805, PMID:40027526
Synonyms: EMPTY
Alternate IDs: WB-STRAIN:AF16, CGC_AF16
Notes: Generated from papers flagged positive during the last month for data type afp_strain/other_strain.|"Non-elegans Strain"|"Reference WBPaper00056884 added based on published strain data identified by Textpresso literature search."|"Reference WBPaper00056998 added based on published strain data identified by Textpresso literature search."|"See WBG 7(1) 48. Isolated from soil in Ahmedabad, India. Previously called C. briggsae G16."|"WBStrain mapped, WBPaper00060132 added based on AFP_Strain data."|"WBStrain mapped, WBPaper00061356 added based on AFP_Strain data."|"WBStrain provided so WBPaper00059443 paper added based on AFP_Strain data."|"Wild-type"
Proper citation: RRID:WB-STRAIN:WBStrain00040935 Copy
http://www.wormbase.org/db/get?name=WBStrain00041044
Source Database: WormBase (WB)
Availability: available
Source References: EMPTY
Synonyms: C. briggsae wild isolate.
Alternate IDs: WB-STRAIN:ED3036, CGC_ED3036
Notes: Isolated as a single hermaphrodite from rotting wood in the garden of a private residence in Tien Mu, Taipai, Taiwan, Oct. 2, 2005.|"Non-elegans Strain"
Proper citation: RRID:WB-STRAIN:WBStrain00041044 Copy
http://www.wormbase.org/db/get?name=WBStrain00041043
Source Database: WormBase (WB)
Availability: available
Source References: EMPTY
Synonyms: C. briggsae wild isolate.
Alternate IDs: WB-STRAIN:ED3035, CGC_ED3035
Notes: Isolated as a single hermaphrodite from rotting wood in the garden of a private residence in Tien Mu, Taipai, Taiwan, Oct. 2, 2005.|"Non-elegans Strain"
Proper citation: RRID:WB-STRAIN:WBStrain00041043 Copy
http://www.wormbase.org/db/get?name=WBStrain00041041
Source Database: WormBase (WB)
Availability: available
Source References: PMID:17339204
Synonyms: C. briggsae wild isolate.
Alternate IDs: WB-STRAIN:ED3033, CGC_ED3033
Notes: Isolated as a single hermaphrodite from rotting wood in the garden of a private residence in Tien Mu, Taipai, Taiwan, Oct. 2, 2005.|"Non-elegans Strain"
Proper citation: RRID:WB-STRAIN:WBStrain00041041 Copy
http://www.wormbase.org/db/get?name=WBStrain00041048
Source Database: WormBase (WB)
Availability: unknown
Source References: EMPTY
Synonyms: C. briggsae wild isolate
Alternate IDs: WB-STRAIN:ED3080
Notes: Isolated from a compost sample from a private garden in Johannesburg, South Africa, March-April 06 by E. Dolgin. Same compost sample as ED3078-3089.|"Non-elegans Strain"
Proper citation: RRID:WB-STRAIN:WBStrain00041048 Copy
http://www.wormbase.org/db/get?name=WBStrain00041055
Source Database: WormBase (WB)
Availability: available
Source References: PMID:20088888
Synonyms: C. briggsae wild isolate.
Alternate IDs: WB-STRAIN:EG4181, CGC_EG4181
Notes: Isolated by Michael Ailion from rotting apricot from home of Wayne Davis and Danielle Endres in Salt Lake City, Utah, 8/4/2006, under tree on north side of house. Coordinates: 40 42' 26.16 N, 111 52' 3.27 W. Animals move very rapidly. Strain started from a single L4 hermaphrodite and grown three generations before freezing. 18S rDNA sequence differs from C. briggsae NCBI entry (PB102), but is identical to the 18S sequence of AF16, HK104, PB800 and VT847. Cross-fertile with AF16.|"Non-elegans Strain"
Proper citation: RRID:WB-STRAIN:WBStrain00041055 Copy
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