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Integrated Animals is a virtual database currently indexing available animal strains and mutants from: AGSC (Ambystoma), BCBC (mice), BDSC (flies), European Xenopus Resource Center (frog), The National Xenopus Resource (frog), Xenopus Express (frog), CWRU Cystic Fibrosis Mouse Models (mice), DGGR (flies), FlyBase (flies), IMSR (mice), MGI (mice), MMRRC (mice), NSRRC (pig), RGD (rats), Sperm Stem Cell Libraries for Biological Research (rats), Tetrahymena Stock Center (Tetrahymena), WormBase (worms), XGSC (Xiphophorus), ZFIN (zebrafish), and ZIRC (zebrafish). Note, the IMSR data is linked, but users may need to re-execute the search if the top mouse is not returned properly.
Note: BCBC is no longer in service, so the links may not be functional.
http://www.wormbase.org/db/get?name=WBStrain00055228
Source Database: WormBase (WB)
Availability: unknown
Source References: EMPTY
Synonyms: syIs561.
Notes: Made_by: Jun Young Oh/Shahla Gharib|"syIs561 [ttx-3p::NLS::GAL4(sk)::VP64::let-858 3'UTR + unc-122p::RFP + 1kb DNA ladder (NEB)] cGAL driver for AIY neurons."
Proper citation: RRID:WB-STRAIN:WBStrain00055228 Copy
http://www.wormbase.org/db/get?name=WBStrain00055193
Source Database: WormBase (WB)
Availability: unknown
Source References: EMPTY
Synonyms: utsIs3.
Notes: utsIs3 [rab-11.2p::YFP::unc-54 3'UTR]. Transcriptional reporter for rab-11.2 activation. YFP expression is low at baseline and activated in the intestine by lipid depletion. Reference: Watterson A, et al. Nature. 2022 May;605(7911):736-740. doi: 10.1038/s41586-022-04729-7. PMID: 35585236.
Proper citation: RRID:WB-STRAIN:WBStrain00055193 Copy
http://www.wormbase.org/db/get?name=WBStrain00055194
Source Database: WormBase (WB)
Availability: unknown
Source References: EMPTY
Synonyms: utsIs4.
Notes: utsIs4 [nhr-49p::nhr-49::GFP + myo-2p::mCherry]. Strain was back-crossed to N2 following transgene integration (parental strain described in Ratnappan R, et al. PLoS Genet. 2014 Dec 4;10(12):e1004829. doi: 10.1371/journal.pgen.1004829. ). Reference: Watterson A, et al. Nature. 2022 May;605(7911):736-740. doi: 10.1038/s41586-022-04729-7. PMID: 35585236.
Proper citation: RRID:WB-STRAIN:WBStrain00055194 Copy
http://www.wormbase.org/db/get?name=WBStrain00055333
Source Database: WormBase (WB)
Affected Genes: WBGene00006508(tns-1)
Genomic Alteration: WBGene00006508(tns-1)
Availability: unknown
Source References: PMID:39999212
Synonyms: tns-1(sy1813) I.
Notes: Made_by: Heenam Park|"Superficially wild type. CRISPR/Cas9 engineered STOP-IN null mutant of tns-1. Universal 43bp-long knock-in insertion with 3-frame stop codon (STOP-IN cassette). Left flanking sequence: CAATTCTCTAGAGTTATACAAAGACAAATTAGTGGTGC. Right flanking sequence: AGGAGGTGGAATTCTAAAGAAGAGTAATGGAAAG. Inserted sequence between the two-flanking sequence (STOP-IN cassette): GGGAAGTTTGTCCAGAGCAGAGGTGACTAAGTGATAAgctagc. sgRNA: AGACAAATTAGTGGTGCAGG Method Reference: Wang H, et al. G3 (Bethesda). 2018 Nov 6;8(11):3607-3616."
Proper citation: RRID:WB-STRAIN:WBStrain00055333 Copy
http://www.wormbase.org/db/get?name=WBStrain00055299
Source Database: WormBase (WB)
Affected Genes: WBGene00011656(oac-45)
Genomic Alteration: WBGene00011656(oac-45)
Availability: unknown
Source References: EMPTY
Synonyms: oac-45(sy1742) I.
Notes: Made_by: Heenam Park|"Superficially wild-type. CRISPR/Cas9 engineered STOP-IN null mutant of oac-45. Universal 43 bp-long knock-in insertion with 3-frame stop codon (STOP-IN cassette). left flanking sequence: GTTCTTGGATTTCATTTCTACCCTAATCAGTTTCCC right flanking sequence: AATGGGTACCTTGGAGTTGATCAgtaaggtttttag inserted sequence between the two flanking sequence (STOP-IN cassette): GGGAAGTTTGTCCAGAGCAGAGGTGACTAAGTGATAAgctagc. sgRNA: ACCCTAATCAGTTTCCCAAT Method Reference: G3 (Bethesda).2018 Nov 6;8(11):3607-3616"
Proper citation: RRID:WB-STRAIN:WBStrain00055299 Copy
http://www.wormbase.org/db/get?name=WBStrain00055335
Source Database: WormBase (WB)
Availability: unknown
Source References: EMPTY
Synonyms: syIs799; syIs300.
Notes: Made_by: Stephanie Nava/Shahla Gharib|"syIs799 [F58F6.6p::NLS::GAL4(sk)::VP64::let-858 3'UTR + unc-122p::RFP + 1kb DNA ladder (NEB)]. cGAL driver for PHC neurons. syIs300 [15xUAS::(delta)pes-10::GFP::let-858 3'UTR + ttx-3p::RFP + 1kb DNA ladder(NEB)] is a GFP cGAL effector. Some worms do not express ttx-3p::RFP marker, but will consistently produce worms with the transgenic marker in next generation."
Proper citation: RRID:WB-STRAIN:WBStrain00055335 Copy
http://www.wormbase.org/db/get?name=WBStrain00055296
Source Database: WormBase (WB)
Affected Genes: WBGene00000676(col-102)
Genomic Alteration: WBGene00000676(col-102)
Availability: unknown
Source References: EMPTY
Synonyms: col-102(sy1735) IV.
Notes: Made_by: Heenam Park|"Superficially wild-type. CRISPR/Cas9 engineered STOP-IN null mutant of col-102. Universal 43 bp-long knock-in insertion with 3-frame stop codon (STOP-IN cassette). left flanking sequence: GATGAGGTCTCTCAAGATCTTACACAATTCCGTGG right flanking sequence: ATACTATGATGATGCGTGGAGAACCATGATGGTC inserted sequence between the two flanking sequence (STOP-IN cassette): GGGAAGTTTGTCCAGAGCAGAGGTGACTAAGTGATAAgctagc. sgRNA: ACGCATCATCATAGTATCCA Method Reference: G3 (Bethesda).2018 Nov 6;8(11):3607-3616"
Proper citation: RRID:WB-STRAIN:WBStrain00055296 Copy
http://www.wormbase.org/db/get?name=WBStrain00055295
Source Database: WormBase (WB)
Availability: unknown
Source References: EMPTY
Synonyms: syIs768; syIs300.
Notes: Made_by: Stephanie Nava/Shahla Gharib|"syIs768 [aqp-6p::NLS::GAL4(sk)::VP64::let-858 3'UTR + unc-122p::RFP + 1kb DNA ladder (NEB)]. cGAL driver for IL1 neurons. syIs300 [15xUAS::(delta)pes-10::GFP::let-858 3'UTR + ttx-3p::RFP + 1kb DNA ladder(NEB)] is a GFP cGAL effector. Some worms do not express ttx-3p::RFP marker, but will consistently produce worms with the transgenic marker in next generation."
Proper citation: RRID:WB-STRAIN:WBStrain00055295 Copy
http://www.wormbase.org/db/get?name=WBStrain00055322
Source Database: WormBase (WB)
Affected Genes: WBGene00005110(srd-32)
Genomic Alteration: WBGene00005110(srd-32)
Availability: unknown
Source References: EMPTY
Synonyms: srd-32(sy1785) V.
Notes: Made_by: Heenam Park|"Superficially wild-type. CRISPR/Cas9 engineered STOP-IN null mutant of srd-32. Universal 43 bp-long knock-in insertion with 3-frame stop codon (STOP-IN cassette). left flanking sequence: CACCATATACTGTATTCTTGGCGAACACCTCTA right flanking sequence: TAACGCAGCTAGGGTATTGCATATGTTTCCTCTTAAC inserted sequence between the two flanking sequence (STOP-IN cassette): GGGAAGTTTGTCCAGAGCAGAGGTGACTAAGTGATAAgctagc. sgRNA: ATACCCTAGCTGCGTTATAG Method Reference: G3 (Bethesda).2018 Nov 6;8(11):3607-3616"
Proper citation: RRID:WB-STRAIN:WBStrain00055322 Copy
http://www.wormbase.org/db/get?name=WBStrain00055288
Source Database: WormBase (WB)
Affected Genes: WBGene00003232(mgl-1)
Genomic Alteration: WBGene00003232(mgl-1)
Availability: unknown
Source References: EMPTY
Synonyms: mgl-1(sy1623) X.
Notes: Made_by: Heenam Park|"Superficially wild-type. CRISPR/Cas9 engineered STOP-IN null mutant of mgl-1. Universal 43 bp-long knock-in insertion with 3-frame stop codon (STOP-IN cassette). left flanking sequence: GTGCACTTATTCTTGATTCATGCTCAAATCCAGCA right flanking sequence: TATGCGCTAAACCAGAGTTTAGATTTTGTGAGAG inserted sequence between the two flanking sequence (STOP-IN cassette): GGGAAGTTTGTCCAGAGCAGAGGTGACTAAGTGATAAgctagc. sgRNA: CTCTGGTTTAGCGCATATGC Method Reference: G3 (Bethesda).2018 Nov 6;8(11):3607-3616"
Proper citation: RRID:WB-STRAIN:WBStrain00055288 Copy
http://www.wormbase.org/db/get?name=WBStrain00055324
Source Database: WormBase (WB)
Affected Genes: WBGene00000649(col-73)
Genomic Alteration: WBGene00000649(col-73)
Availability: unknown
Source References: EMPTY
Synonyms: col-73(sy1792) II.
Notes: Made_by: Heenam Park|"Superficially wild-type. CRISPR/Cas9 engineered STOP-IN null mutant of col-73. Universal 43 bp-long knock-in insertion with 3-frame stop codon (STOP-IN cassette). left flanking sequence: GACCAGATGCTCCAAATGAGCACGTTCAACCAACT right flanking sequence: CCAGCCGATTTCTGCTTCGAGTGCCCACCAGGACC inserted sequence between the two flanking sequence (STOP-IN cassette): GGGAAGTTTGTCCAGAGCAGAGGTGACTAAGTGATAAgctagc. sgRNA: AAGCAGAAATCGGCTGGAGT Method Reference: G3 (Bethesda).2018 Nov 6;8(11):3607-3616"
Proper citation: RRID:WB-STRAIN:WBStrain00055324 Copy
http://www.wormbase.org/db/get?name=WBStrain00055285
Source Database: WormBase (WB)
Affected Genes: WBGene00009562(flp-22)
Genomic Alteration: WBGene00009562(flp-22)
Availability: unknown
Source References: EMPTY
Synonyms: flp-22(sy1608) I.
Notes: Made_by: Heenam Park|"Superficially wild-type. CRISPR/Cas9 engineered STOP-IN null mutant of flp-22. Universal 43 bp-long knock-in insertion with 3-frame stop codon (STOP-IN cassette). left flanking sequence: CCTTTGTGTTGTTTTGATGGTATCATTGGTGTCGG right flanking sequence: CTCAGGTCTTCGATTTGGATGGACAACAGTTGGC inserted sequence between the two flanking sequence (STOP-IN cassette): GGGAAGTTTGTCCAGAGCAGAGGTGACTAAGTGATAAgctagc. sgRNA: GGTATCATTGGTGTCGGCTC Method Reference: G3 (Bethesda).2018 Nov 6;8(11):3607-3616"
Proper citation: RRID:WB-STRAIN:WBStrain00055285 Copy
http://www.wormbase.org/db/get?name=WBStrain00055284
Source Database: WormBase (WB)
Availability: unknown
Source References: EMPTY
Synonyms: syIs612.
Notes: Made_by: Jun Young Oh/Mark Zhang|"syIs612 [15xUAS::GCaMP7b::SL2::mKate::let-858 3'UTR + ttx-3p::RFP + 1kb DNA ladder (NEB)]. In vivo calcium indicator cGAL effector."
Proper citation: RRID:WB-STRAIN:WBStrain00055284 Copy
http://www.wormbase.org/db/get?name=WBStrain00055329
Source Database: WormBase (WB)
Affected Genes: WBGene00001864(him-5)|WBGene00006135(str-74)
Genomic Alteration: WBGene00001864(him-5), WBGene00006135(str-74)
Availability: unknown
Source References: EMPTY
Synonyms: him-5(e1490) V; str-74(sy1802) X.
Notes: Made_by: Heenam Park|"Superficially wild-type. CRISPR/Cas9 engineered STOP-IN null mutant of str-74 in him-5(e1490) background. Universal 43 bp-long knock-in insertion with 3-frame stop codon (STOP-IN cassette). left flanking sequence: GGGAATATTGTTTTCGGGAATAGAAATCCTTGC right flanking sequence: CAGACCATTCGCTCATAATTATAACAACAGTTTGATG inserted sequence between the two flanking sequence (STOP-IN cassette): GGGAAGTTTGTCCAGAGCAGAGGTGACTAAGTGATAAgctagc. sgRNA: TATGAGCGAATGGTCTGGCA Method Reference: G3 (Bethesda). 2018 Nov 6;8(11):3607-3616"
Proper citation: RRID:WB-STRAIN:WBStrain00055329 Copy
http://www.wormbase.org/db/get?name=WBStrain00055326
Source Database: WormBase (WB)
Affected Genes: WBGene00007333(ufd-3)
Genomic Alteration: WBGene00007333(ufd-3)
Availability: unknown
Source References: EMPTY
Synonyms: ufd-3(sy1796) II.
Notes: Made_by: Heenam Park|"Superficially wild type. CRISPR/Cas9 engineered STOP-IN null mutant of ufd-3. Universal 43bp-long knock-in insertion with 3-frame stop codon (STOP-IN cassette) into the 1st one of the exons shared by all isoforms of the gene. Left flanking sequence: CTCATCATTCACTGAATTCGTATTTCTGTGATCGTGA. Right flanking sequence: ACGTGGTCAGGAACTTGTCGGAAGATTAATTGC. Inserted sequence between the two-flanking sequence (STOP-IN cassette): GGGAAGTTTGTCCAGAGCAGAGGTGACTAAGTGATAAgctagc. sgRNA: TATTTCTGTGATCGTGAACG Method Reference: Wang H, et al. G3 (Bethesda).2018 Nov 6;8(11):3607-3616."
Proper citation: RRID:WB-STRAIN:WBStrain00055326 Copy
http://www.wormbase.org/db/get?name=WBStrain00055291
Source Database: WormBase (WB)
Affected Genes: WBGene00000631(col-54)
Genomic Alteration: WBGene00000631(col-54)
Availability: unknown
Source References: EMPTY
Synonyms: col-54(sy1630) I.
Notes: Made_by: Heenam Park|"Superficially wild-type. CRISPR/Cas9 engineered STOP-IN null mutant of col-54. Universal 43 bp-long knock-in insertion with 3-frame stop codon (STOP-IN cassette). left flanking sequence: CAGTCTTCTTGTTGCTGGATCATTATTCTTTGAAGC right flanking sequence: TCAAGGATTTTTAGAGACTTCACTTGATGAAATTG inserted sequence between the two flanking sequence (STOP-IN cassette): GGGAAGTTTGTCCAGAGCAGAGGTGACTAAGTGATAAgctagc. sgRNA: TCATTATTCTTTGAAGCTCA Method Reference: G3 (Bethesda).2018 Nov 6;8(11):3607-3616"
Proper citation: RRID:WB-STRAIN:WBStrain00055291 Copy
http://www.wormbase.org/db/get?name=WBStrain00055293
Source Database: WormBase (WB)
Availability: unknown
Source References: EMPTY
Synonyms: syIs748; syIs300.
Notes: Made_by: Stephanie Nava/Shahla Gharib|"syIs748 [tbh-1p::NLS::GAL4(sk)::VP64::let-858 3'UTR + unc-122p::RFP + 1kb DNA ladder (NEB)] cGAL driver for RIC neurons. syIs300 [15xUAS::(delta)pes-10::GFP::let-858 3'UTR + ttx-3p::RFP + 1kb DNA ladder(NEB)] is a GFP cGAL effector. Some worms do not express ttx-3p::RFP marker, but will consistently produce worms with the transgenic marker in next generation."
Proper citation: RRID:WB-STRAIN:WBStrain00055293 Copy
http://www.wormbase.org/db/get?name=WBStrain00055290
Source Database: WormBase (WB)
Affected Genes: WBGene00000617(col-40)
Genomic Alteration: WBGene00000617(col-40)
Availability: unknown
Source References: EMPTY
Synonyms: col-40(sy1628) II.
Notes: Made_by: Heenam Park|"Superficially wild-type. CRISPR/Cas9 engineered STOP-IN null mutant of col-40. Universal 43 bp-long knock-in insertion with 3-frame stop codon (STOP-IN cassette). left flanking sequence: aactattttcagGTCGAATTCTGCAAGCACCGAAC right flanking sequence: TGACGGACTCTGGGATGAGTTCCACAGAgtaagta inserted sequence between the two flanking sequence (STOP-IN cassette): GGGAAGTTTGTCCAGAGCAGAGGTGACTAAGTGATAAgctagc. sgRNA: TTCTGCAAGCACCGAACTGA Method Reference: G3 (Bethesda).2018 Nov 6;8(11):3607-3616"
Proper citation: RRID:WB-STRAIN:WBStrain00055290 Copy
http://www.wormbase.org/db/get?name=WBStrain00055278
Source Database: WormBase (WB)
Availability: unknown
Source References: EMPTY
Synonyms: syIs716; syIs300.
Notes: Made_by: Mark Zhang/Stephanie Nava|"syIs716 [klp-6p::NLS::GAL4(sk)::VP64::let-858 3'UTR + unc-122p::RFP + 1kb DNA ladder (NEB)]. cGAL driver for IL2 neurons. syIs300 [15xUAS::(delta)pes-10::GFP::let-858 3'UTR + ttx-3p::RFP + 1kb DNA ladder(NEB)] is a GFP cGAL effector. Some worms do not express ttx-3p::RFP marker, but will consistently produce worms with the transgenic marker in next generation."
Proper citation: RRID:WB-STRAIN:WBStrain00055278 Copy
http://www.wormbase.org/db/get?name=WBStrain00055311
Source Database: WormBase (WB)
Availability: unknown
Source References: EMPTY
Synonyms: syIs788.
Notes: Made_by: Mark Zhang/Stephanie Nava|"syIs788 [srt-28p::NLS::GAL4(sk)::VP64::let-858 3'UTR + unc-122p::RFP + 1kb DNA ladder (NEB)]. cGAL driver for AWC-OFF neuron."
Proper citation: RRID:WB-STRAIN:WBStrain00055311 Copy
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