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Integrated Animals is a virtual database currently indexing available animal strains and mutants from: AGSC (Ambystoma), BCBC (mice), BDSC (flies), European Xenopus Resource Center (frog), The National Xenopus Resource (frog), Xenopus Express (frog), CWRU Cystic Fibrosis Mouse Models (mice), DGGR (flies), FlyBase (flies), IMSR (mice), MGI (mice), MMRRC (mice), NSRRC (pig), RGD (rats), Sperm Stem Cell Libraries for Biological Research (rats), Tetrahymena Stock Center (Tetrahymena), WormBase (worms), XGSC (Xiphophorus), ZFIN (zebrafish), and ZIRC (zebrafish). Note, the IMSR data is linked, but users may need to re-execute the search if the top mouse is not returned properly.
Note: BCBC is no longer in service, so the links may not be functional.
http://www.wormbase.org/db/get?name=WBStrain00054772
Source Database: WormBase (WB)
Affected Genes: WBGene00010492(meg-1)
Genomic Alteration: WBGene00010492(meg-1)
Availability: unknown
Source References: EMPTY
Synonyms: meg-1(ax4534[meg-1::gfp]) X.
Notes: GFP tag inserted at C-terminus of the endogenous meg-1 locus by CRISPR. Reference: Cassani M & Seydoux G. Development 2022 Nov 1;149(21):dev200920. doi: 10.1242/dev.200920. PMID: 36196602.
Proper citation: RRID:WB-STRAIN:WBStrain00054772 Copy
http://www.wormbase.org/db/get?name=WBStrain00054774
Source Database: WormBase (WB)
Affected Genes: WBGene00001569(meg-3)|WBGene00003916(par-1)
Genomic Alteration: WBGene00001569(meg-3), WBGene00003916(par-1)
Availability: unknown
Source References: EMPTY
Synonyms: par-1(ax4202[par-1(T983A)]) V/nT1[qIs51] (IV;V); meg-3(ax3054[meg-3::meGFP]) X.
Notes: meGFP inserted between P121 and V122 of endogenous MEG-3. qIs51 [myo-2p::GFP + pes-10p::GFP + F22B7.9p::GFP]. Heterozygotes are wild-type GFP+ and segregate non-GFP par-1 homozygotes (viable, lay dead embryos), wild-type GFP+ heterozygotes, and arrested nT1[qIs51] aneuploids. Pick wild-type GFP+ and check for correct segregation of progeny to maintain. Replacement of threonine 983 with alanine eliminates PAR-1 asymmetry. Reference: Folkman AW & Seydoux G. Development. 2019 Mar 25;146(6):dev171116. doi: 10.1242/dev.171116. PMID: 30814118
Proper citation: RRID:WB-STRAIN:WBStrain00054774 Copy
http://www.wormbase.org/db/get?name=WBStrain00054770
Source Database: WormBase (WB)
Affected Genes: WBGene00000265(brd-1)|WBGene00002027(hsr-9)
Genomic Alteration: WBGene00000265(brd-1), WBGene00002027(hsr-9)
Availability: unknown
Source References: EMPTY
Synonyms: hsr-9(xoe17) I; brd-1(xoe18) III.
Notes: Emb. Reference: Hariri S, et al. (2023). 53bp1 mutation enhances brca1 and bard1 embryonic lethality in C. elegans. microPublication Biology. 10.17912/micropub.biology.000934. PMID: 37581122.
Proper citation: RRID:WB-STRAIN:WBStrain00054770 Copy
http://www.wormbase.org/db/get?name=WBStrain00054775
Source Database: WormBase (WB)
Affected Genes: WBGene00001569(meg-3)|WBGene00003916(par-1)
Genomic Alteration: WBGene00001569(meg-3), WBGene00003916(par-1)
Availability: unknown
Source References: EMPTY
Synonyms: par-1(ax4208[meGFP::delta-KA1]) V/nT1[qIs51] (IV;V).
Notes: meGFP inserted between P121 and V122 of endogenous MEG-3. qIs51 [myo-2p::GFP + pes-10p::GFP + F22B7.9p::GFP]. Heterozygotes are wild-type GFP+ and segregate non-GFP par-1 homozygotes (viable, lay viable progeny that are completely sterile), wild-type GFP+ heterozygotes, and arrested nT1[qIs51] aneuploids. Pick wild-type GFP+ and check for correct segregation of progeny to maintain. par-1(ax4208) removes the KA1 domain from a GFP-tagged version of PAR-1. Reference: Folkman AW & Seydoux G. Development. 2019 Mar 25;146(6):dev171116. doi: 10.1242/dev.171116. PMID: 30814118
Proper citation: RRID:WB-STRAIN:WBStrain00054775 Copy
http://www.wormbase.org/db/get?name=WBStrain00054778
Source Database: WormBase (WB)
Affected Genes: WBGene00003800(npp-14)
Genomic Alteration: WBGene00003800(npp-14)
Availability: unknown
Source References: PMID:37254647
Synonyms: npp-14(ax4543) I.
Notes: ax4523 is a deletion residues 24-1387 of the npp-14 coding region. Reference: Thomas et al. 2022. Cytoplasmic nucleoporin foci are stress-sensitive, non-essential condensates in C. elegans
Proper citation: RRID:WB-STRAIN:WBStrain00054778 Copy
http://www.wormbase.org/db/get?name=WBStrain00054811
Source Database: WormBase (WB)
Affected Genes: WBGene00000168(apx-1)
Genomic Alteration: WBGene00000168(apx-1)
Availability: unknown
Source References: EMPTY
Synonyms: apx-1(q1148[apx-1::3xV5]) V.
Notes: 3xV5 tag inserted at C-terminus of endogenous apx-1 locus. APX-1 guide: GACTCGTCATCTGCTGCCATCGG. APX-1 3xV5 repair with mutation (197 nt): CCTATGGCAGCAGATGACGAGTCGTCGTTTCGAGTCGGTAAGCCTATCCCTAACCCTCTCCTCGGTCTAGATAGTACTGGAAAGCCAATCCCAAACCCACTCCTCGGACTTGATAGCACCGGTAAGCCTATCCCTAACCCACTCCTCGGACTTGATAGCACCTAAACAACAGCTCGACGACGAGATTTACAATAATT.|"CRISPR/Cas9 gene editing was used to insert a 3xV5 tag inserted at the C-terminus of the endogenous apx-1 locus immediately upstream of STOP codon. Animals are fertile and express low levels of APX-1 V5 in adult DTCs."
Proper citation: RRID:WB-STRAIN:WBStrain00054811 Copy
http://www.wormbase.org/db/get?name=WBStrain00054810
Source Database: WormBase (WB)
Affected Genes: WBGene00003785(nos-3)
Genomic Alteration: WBGene00003785(nos-3)
Availability: unknown
Source References: EMPTY
Synonyms: nos-3(q902) II; qSi380 IV.
Notes: Made_by: Jon Doenier|"qSi380 [mex-5p::eGFP::3xOLASS::linker::his-58::MODC pest::3xboxb::tbb-2 3'UTR::SL2 trans-splice site::mCherry::3xV5::linker::his-58::MODC pest::mutant 3xboxb::tbb-2 3'utr::tbb-1 intergenic region] IV. Worms are fertile at 20C. Improved tethering assay for use in the C. elegans germline. GFP reporter mRNA is under control of a germline-expressed mex-5 promoter and has three boxB stem-loops in its 3'UTR. The RNA-binding protein (RBP) is tagged with lamda-N. The nascent transcript driven by mex-5 promoter is resolved by trans-splicing into two mRNAs that encode distinct reporters. The GFP reporter RNA has three functional boxB stem-loops in its 3'UTR; the mCherry reporter 3'UTR has three mutated boxB stem-loops that do not bind lamda-N and therefore provides an internal control. Addition of an OLLAS tag to GFP and a V5 tag to mCherry enables sensitive immunostaining and immunoblotting. Reference: Doenier J, et al. RNA. 2021 Jun;(6)643-652. PMID: 33727224."
Proper citation: RRID:WB-STRAIN:WBStrain00054810 Copy
http://www.wormbase.org/db/get?name=WBStrain00054819
Source Database: WormBase (WB)
Affected Genes: WBGene00018921(sago-2)
Genomic Alteration: WBGene00018921(sago-2)
Availability: unknown
Source References: EMPTY
Synonyms: sago-2(tor135) I.
Notes: Null allele of sago-2; detectable by PCR/restriction digest. Reference: Seroussi U, et al. bioRxiv 2022.08.08.502013; doi: https:
Proper citation: RRID:WB-STRAIN:WBStrain00054819 Copy
http://www.wormbase.org/db/get?name=WBStrain00054881
Source Database: WormBase (WB)
Affected Genes: WBGene00006843(unc-119)
Genomic Alteration: WBGene00006843(unc-119)
Availability: unknown
Source References: EMPTY
Synonyms: unc-119(ed9) III; irSi24 IV.
Notes: irSi24 [pept-1::mCherry::H2B + Cbr-unc-119(+)] IV. Single-copy MosSCI insertion of pept-1 reporter into cxTi10882 site in LG IV. mCherry fluorescence exclusively in intestinal nuclei from the end of embryonic development through adulthood. Generated in N2 background. Reference: Maduro MF, et al. Dev Biol 2015 Aug 1;404(1):66-79. doi: 10.1016/j.ydbio.2015.04.025, PMID:25959238.
Proper citation: RRID:WB-STRAIN:WBStrain00054881 Copy
http://www.wormbase.org/db/get?name=WBStrain00054880
Source Database: WormBase (WB)
Affected Genes: WBGene00006925(vit-1)|WBGene00006926(vit-2)
Genomic Alteration: WBGene00006925(vit-1), WBGene00006926(vit-2)
Availability: unknown
Source References: EMPTY
Synonyms: vit-2(ok3211) vit-1(hq532) X.
Notes: hq532 is a CRISPR-engineered knockout of vit-1 in vit-2(ok3211) background removing 8 bp from the third exon of vit-1: WT sequence AAAGCATTGAGAAGGAGTCCACAACTGTTGTCCGCGGACGCCGTATCCAAACCGGAATCACG mutated to AAAGCATTGAGAAGGAGTCCACAAC--------GCGGACGCCGTATCCAAACCGGAATCACG. For genotyping, the following primers will produce ~800 bp DNA fragment that can be sequenced. Forward primer: TACCAACGTGTTGCTATCGTTTGCTC. Reverse primer: TTGCTCGAAGAGTGGGGTGAACATTCTC. Strain does not express vit-1 or vit-2. Reference: Zhai C, et al. bioRxiv 2022.06.27.497668; doi: https:|"Made_by: Chao Zhai"
Proper citation: RRID:WB-STRAIN:WBStrain00054880 Copy
http://www.wormbase.org/db/get?name=WBStrain00054925
Source Database: WormBase (WB)
Availability: unknown
Source References: EMPTY
Synonyms: qySi566 I.
Notes: qySi566 [lin-29p::enol-1a::mNG + loxP] I. Single-copy insertion. Anchor cell specific expression of glycolytic enzyme enol-1a which forms puncta at the invasive side and is also expressed in the nucleus. Reference: Garde A, et. al. Dev. Cell. 2022 Mar 28;57(6):732-749.e7. PMID: 35316617
Proper citation: RRID:WB-STRAIN:WBStrain00054925 Copy
http://www.wormbase.org/db/get?name=WBStrain00054924
Source Database: WormBase (WB)
Availability: unknown
Source References: EMPTY
Synonyms: qySi565 I.
Notes: qySi565 [lin-29p::pyk-1a::mNG + loxP] I. Single-copy insertion. Anchor cell-specific expression of the mNG-tagged glycolytic enzyme PYK-1A forms puncta at the site of invasion. Reference: Garde A, et. al. Dev. Cell. 2022 Mar 28;57(6):732-749.e7. PMID: 35316617
Proper citation: RRID:WB-STRAIN:WBStrain00054924 Copy
http://www.wormbase.org/db/get?name=WBStrain00054885
Source Database: WormBase (WB)
Availability: unknown
Source References: EMPTY
Synonyms: otIs181 III; otIs138 X; otIs396.
Notes: Made_by: Barbara OBrien in the Miller lab|"otIs181[dat-1::mCherry + ttx-3::mCherry] III. otIs138[ser-2(prom3)::GFP + rol-6(su1006)] X. otIs396 [ace-1prom2::NLS::tagRFP]. Rollers. dat-1::mCherry labels ADE, CEP, and PDE neurons. ttx3::mCherry labels AIY neurons. ser-2(prom3)::GFP labels OLL, PDE, and PVD neurons. ace-1prom2::NLS::tagRFP labels CEP and OLL neurons. PVD can be identified by expression only GFP. An additional pair of GFP-only cells anterior to OLL are occasionally observed in this strain. Can be used to isolate PVD by FACS (green-only). Used by CeNGEN project for RNA-Seq (https:"
Proper citation: RRID:WB-STRAIN:WBStrain00054885 Copy
http://www.wormbase.org/db/get?name=WBStrain00054921
Source Database: WormBase (WB)
Affected Genes: WBGene00000075(adm-4)
Genomic Alteration: WBGene00000075(adm-4)
Availability: unknown
Source References: EMPTY
Synonyms: adm-4(qy153[adm-4::mNG + LoxP]) X.
Notes: Made_by: Eric Hastie|"mNG tag inserted into the endogenous adm-4 locus (internal tag). Reference: Jayadev R, et al. Sci Adv. 2022 May 20;8(20):eabn2265. doi: 10.1126/sciadv.abn2265. PMID: 35584218."
Proper citation: RRID:WB-STRAIN:WBStrain00054921 Copy
http://www.wormbase.org/db/get?name=WBStrain00054920
Source Database: WormBase (WB)
Availability: unknown
Source References: EMPTY
Synonyms: T19D12.6(qy149[T19D12.6::mNG + LoxP]) II.
Notes: mNG tag inserted into the endogenous T19D12.6 locus (internal tag). Reference: Jayadev R, et al. Sci Adv. 2022 May 20;8(20):eabn2265. doi: 10.1126/sciadv.abn2265. PMID: 35584218.
Proper citation: RRID:WB-STRAIN:WBStrain00054920 Copy
http://www.wormbase.org/db/get?name=WBStrain00054927
Source Database: WormBase (WB)
Affected Genes: WBGene00020838(trak-1)
Genomic Alteration: WBGene00020838(trak-1)
Availability: unknown
Source References: EMPTY
Synonyms: trak-1(qy158[trak-1::mNG + loxP]) I.
Notes: trak-1 locus endogenously tagged with mNG at the C-terminus. Reference: Garde A, et. al. Dev. Cell. 2022 Mar 28;57(6):732-749.e7. PMID: 35316617
Proper citation: RRID:WB-STRAIN:WBStrain00054927 Copy
http://www.wormbase.org/db/get?name=WBStrain00054928
Source Database: WormBase (WB)
Affected Genes: WBGene00019207(fdgt-1)
Genomic Alteration: WBGene00019207(fdgt-1)
Availability: unknown
Source References: EMPTY
Synonyms: qySi569 I; fdgt-1(tm3165) II.
Notes: qySi569 [cdh-3p::fdgt-2::mNG + loxP] I. fdgt-1 glucose transporter null mutant expressing a single copy insertion of the glucose transporter fgt-2 in the anchor cell. fdgt-1 and fdgt-2 formerly known as fgt-1 and fgt-2, respectively. Reference: Garde A, et. al. Dev. Cell. 2022 Mar 28;57(6):732-749.e7. PMID: 35316617|"qySi569 [cdh-3p::fgt-2::mNG + loxP] I. fgt-1 glucose transporter null mutant expressing a single copy insertion of the glucose transporter fgt-2 in the anchor cell. Reference: Garde A, et. al. Dev. Cell. 2022 Mar 28;57(6):732-749.e7. PMID: 35316617"
Proper citation: RRID:WB-STRAIN:WBStrain00054928 Copy
http://www.wormbase.org/db/get?name=WBStrain00054870
Source Database: WormBase (WB)
Affected Genes: WBGene00006843(unc-119)
Genomic Alteration: WBGene00006843(unc-119)
Availability: unknown
Source References: EMPTY
Synonyms: unc-119(ed3) III; bcSi69 IV; bcEx1368.
Notes: bcSi69 [hsp-16.41p::dCas9::SV40-NLS::HA::GS-linker::SV40-NLS::GFP::GFP::SV40-NLS::mai-2 3UTR + Cbr-unc-119(+)] IV. bcEx1368 [U6p::rrn-1(sgRNAs1-4 targeting the rrn-1 locus) + rol-6(su1006)]. Maintain at 15C. Pick Rollers to maintain. After heat shock, distinct spots of GFP fluorescence are visible in the nucleus. bcEx1368 array contains a PCR product of 4 different guide RNAs targeting rrn-1 (around 100 repeats of rrn-1 on LG I). Reference: Memar N, et al. In vivo labeling of endogenous genomic loci in C. elegans using CRISPR/dCas9. MicroPubl Biol. 2022 Dec 13;2022:10.17912/micropub.biology.000701. doi: 10.17912/micropub.biology.000701. PMID: 36606081; PMCID: PMC9807462.
Proper citation: RRID:WB-STRAIN:WBStrain00054870 Copy
http://www.wormbase.org/db/get?name=WBStrain00054873
Source Database: WormBase (WB)
Affected Genes: WBGene00015547(ain-1)
Genomic Alteration: WBGene00015547(ain-1)
Availability: unknown
Source References: EMPTY
Synonyms: ain-1(ku425) X.
Notes: Made_by: Lei Ding and Kiyokazu Morita|"Superficially wild-type. Identified in a screen for suppressors of the Multivulva (Muv) phenotype in lin-31 loss-of-function (lf) mutants. Reference: Ding L, et al. Mol Cell. 2005 Aug 19;19(4):437-47. PMID: 16109369."
Proper citation: RRID:WB-STRAIN:WBStrain00054873 Copy
http://www.wormbase.org/db/get?name=WBStrain00054879
Source Database: WormBase (WB)
Affected Genes: WBGene00001864(him-5)
Genomic Alteration: WBGene00001864(him-5)
Availability: unknown
Source References: PMID:37691148
Synonyms: him-5(e1490) V; etyIs1.
Notes: etyIs1 [gpa-13p::FLPase + sra-6p::FRT::mCherry::StopCodon::FRT::GCaMP6s]. Him. Integrated ASH-specific calcium sensor transgene. Reference: Pechuk V., et al. 2022, Current Biology 32, 114. https:|"Made_by: Vladyslava Pechuk"|"Supplementary_genotype etyIs1[Pgpa-13FLPase, Psra-6FTFGCaMP6s]; him-5(e1490)V"
Proper citation: RRID:WB-STRAIN:WBStrain00054879 Copy
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