NEURON
Resource Report
Resource Website
100+ mentions
|
NEURON (RRID:SCR_017449)
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simulation software, software application, software resource
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Software for computational neurophysiology. Simulation environment is used for building and using computational models of neurons and networks of neurons. NEURON Users Group can participate in collaborative development of documentation, tutorials, and software.
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Computational, neurophysiology, model, neuron, network, building, BRAIN Initiative
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is recommended by: BRAIN Initiative
has parent organization: Yale University; Connecticut; USA
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NIBIB EB022903 |
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Free, Available for download, Freely available |
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https://github.com/neuronsimulator/nrn |
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SCR_017449 |
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2026-08-21 12:41:14 |
244 |
NeuronVisio
Resource Report
Resource Website
1+ mentions
|
NeuronVisio (RRID:SCR_006839)
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Neuronvisio
|
d visualization software
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A Graphical User Interface for NEURON simulator environment with 3D capabilities. Neuronvisio makes easy to select and investigate sections'''' properties and it offers easy integration with matplotlib for plotting the results. The geometry can be saved using NeuroML and the computational results in a customized and extensible HDF5 format; the results can then be reload in the software and analyzed in a later stage, without re-running the simulation. Featuring 3D visualization of the model with the possibility to change it runtime; creation of vectors to record any variables present in the section; pylab integration to plot directly the result of the simulation; exploration of the timecourse of any variable among time using a color coded scale; saving the results simulation for later analysis; automatic download and running of models in ModelDB.
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3d visualization, electrophysiological model, hdf storage, matplotlib integration, neuron model, visualization, neuron, visualization, electrophysiology
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is related to: INCF Software Center
is related to: NEURON
is related to: ModelDB
has parent organization: European Bioinformatics Institute
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Wellcome Trust |
PMID:22685429 |
GNU General Public License, Acknowledgement requested |
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nlx_156723 |
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SCR_006839 |
Neuron visio |
2026-08-15 11:23:29 |
3 |
neuroConstruct
Resource Report
Resource Website
10+ mentions
|
neuroConstruct (RRID:SCR_007197)
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neuroConstruct
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simulation software, software application, software resource
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Software for simulating complex networks of biologically realistic neurons, i.e. models incorporating dendritic morphologies and realistic cell membrane conductance, implemented in Java and generates script files for the NEURON and GENESIS simulators, with support for other simulation platforms (including PSICS and PyNN) in development. neuroConstruct is being developed in the Silver Lab in the Department of Neuroscience, Physiology and Pharmacology at UCL and uses the latest NeuroML specifications, including MorphML, ChannelML and NetworkML. Some of the key features of neuroConstruct are: Creation of networks of biologically realistic neurons, positioned in 3D space. Complex connectivity patterns between cell groups can be specified for the networks. Can import morphology files in GENESIS, NEURON, Neurolucida, SWC and MorphML format for inclusion in network models. Simulations can be run on the NEURON or GENESIS platforms. Cellular processes (synapses/channel mechanisms) can be imported from native script files or created in ChannelML. Recording of simulation data generated by the simulation and visualization/analysis of data. Stored simulation runs can be viewed and managed through the Simulation Browser interface.
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cell, cellular, channel, conductance, data, dendrite, java, mechanism, membrane, model, morphology, network, neuron, neuronal network, pharmacology, physiology, simulation, software, synapse, visualization
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is listed by: 3DVC
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: NEURON
is related to: Open Source Brain
is related to: NeuroML
has parent organization: University College London; London; United Kingdom
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Wellcome Trust ;
MRC |
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nif-0000-00105 |
http://www.nitrc.org/projects/neuroconstruct |
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SCR_007197 |
neuroConstruct: Biophysical Neural Network Modeling Software |
2026-08-21 12:38:11 |
11 |
BRAIN Initiative
Resource Report
Resource Website
10+ mentions
|
BRAIN Initiative (RRID:SCR_006770)
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NIH BRAIN Initiative
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data or information resource, organization portal, portal
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Project aimed at revolutionizing understanding of human brain, to show how individual cells and complex neural circuits interact, enable rapid progress in development of new technologies and data analysis tools to treat and prevent brain disorders. BRAIN Initiative encourages collaborations between neurobiologists and scientists from disciplines such as statistics, physics, mathematics, engineering, and computer and information sciences. Institutes and centers contributing to NIH BRAIN Initiative support those research efforts.
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brain, connectomics, disorder, cell, neural, circuit, neurotechnology, data, repository, analysis
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uses: Single Cell Portal
recommends: Human Neocortical Neurosolver
recommends: Brain Gene Expression Analysis toolbox
recommends: clusterExperiment
recommends: BioWheel
recommends: iELVis
recommends: Mediation Analysis of Causality under Confounding
recommends: MCell
recommends: microMS
recommends: MIIVsem
recommends: MountainSort
recommends: Myriads
recommends: nelpy
recommends: NetPyNE
recommends: Neural Ideal
recommends: NEURON
recommends: Neuron Tools
recommends: Neuroscience Gateway
recommends: NUTMEG
recommends: PetaVision
recommends: PyNWB
recommends: pyRayleighCuda
recommends: ScanImage
recommends: Scope
recommends: Seizure-Waves
recommends: Silver Lab Microscopy Software
recommends: StimVision
recommends: TReNA
recommends: ALICE
recommends: BioImage Suite
recommends: EyeWire
recommends: GIMME
recommends: GMA
recommends: Homer2
recommends: Brain Image Library
recommends: Data Archive BRAIN Initiative
recommends: OpenNeuro
recommends: Brain Observatory Storage Service and Database (BossDB)
recommends: 1000 Functional Connectomes Project
recommends: FastProject
recommends: Autopatcher
recommends: cytoNet
recommends: DiffuserCam
recommends: gene Expression Analysis Resource
recommends: NeMOarchive
recommends: Distributed Archives for Neurophysiology Data Integration
recommends: NIDA Data Share
recommends: HED Tags
lists: University of North Carolina Neuroscience Center and the BRAIN Initiative Viral Vector Core Facility
is related to: Brain Image Library
is related to: OpenNeuro
is related to: Distributed Archives for Neurophysiology Data Integration
is related to: NeMO Analytics
is related to: Brainome portal
is related to: CEMBA MethylC Seq Pipeline
is related to: Seattle Alzheimer Disease Brain Cell Atlas
is related to: EBRAINS
is related to: Human Brain Variation Project
has parent organization: National Institutes of Health
is parent organization of: Data Archive BRAIN Initiative
is parent organization of: OpenNeuro
is parent organization of: Brain Observatory Storage Service and Database (BossDB)
is parent organization of: Ecosystem for Multi-modal Brain-behavior Experimentation and Research
has organization facet: 3D Developmental Mouse Brain Common Coordinate Framework
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Alzheimer's disease, Schizophrenia, Autism, Epilepsy, Traumatic brain injury |
BRAIN Initiative |
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nlx_155554 |
http://braininitiative.nih.gov/, http://www.whitehouse.gov/share/brain-initiative, http://en.wikipedia.org/wiki/BRAIN_Initiative |
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SCR_006770 |
, Brain Research through Advancing Innovative Neurotechnologies Initiative, NIH Brain Research through Advancing Innovative Neurotechnologies Initiative |
2026-08-21 12:38:02 |
24 |
Neuroscience Gateway
Resource Report
Resource Website
10+ mentions
|
Neuroscience Gateway (RRID:SCR_008915)
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NSG
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data or information resource, portal, project portal, software resource
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Web portal that allows free access to supercomputing resources for large scale modeling and data processing. Portal facilitates access and use of National Science Foundation (NSF) High Performance Computing (HPC) resources by neuroscientists.
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Large, scale, modeling, data, computing, neuroscience, neuron, BRAIN Initiative
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is recommended by: BRAIN Initiative
lists: ModelRun
is related to: XSEDE - Extreme Science and Engineering Discovery Environment
is related to: NEURON
is related to: GENESIS Neural Database and Modelers Workspace
has parent organization: San Diego Supercomputer Center
has parent organization: Neuroscience Information Framework
has parent organization: Yale School of Medicine; Connecticut; USA
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BBSRC N005236;
NIBIB R01 EB023297;
NSF 1146949;
NSF 1339856;
NSF 1458495;
NSF 1458840 |
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Free, Freely available |
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nlx_151553, SCR_015767 |
http://www.nitrc.org/projects/nsg/ |
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SCR_008915 |
Neuroscience Gateway - A Portal for Computational Neuroscience, Neuroscience Gateway, Neuroscience Gateway (NSG) Portal |
2026-08-21 12:38:55 |
25 |
LFPy
Resource Report
Resource Website
10+ mentions
|
LFPy (RRID:SCR_014805)
|
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software resource, source code
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Python package for calculation of extracellular potentials from multicompartment neuron models. LFPy can be used to set up a model, run simulations, and calculate the extracellular potentials arising from activity in the given model neuron. It relies on the Python interface provided by the NEURON simulator.
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python, extracellular potential, neuron, model, simulator
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uses: NEURON
is related to: Python Programming Language
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PMID:24474916
DOI:10.3389/fninf.2013.00041 |
Open source, Available for download |
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SCR_014805 |
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2026-08-21 12:40:26 |
35 |
NeuroImaging Tools and Resources Collaboratory (NITRC)
Resource Report
Resource Website
100+ mentions
|
NeuroImaging Tools and Resources Collaboratory (NITRC) (RRID:SCR_003430)
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NITRC
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community building portal, data or information resource, data repository, portal, service resource, software repository, software resource, storage service resource
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Software repository for comparing structural (MRI) and functional neuroimaging (fMRI, PET, EEG, MEG) software tools and resources. NITRC collects and points to standardized information about structural or functional neuroimaging tool or resource.
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collaboration, information, resource, structural, functional, neuroimaging, MRI, fMRI, EEG, MEG, PET
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is used by: NIF Data Federation
is used by: Consortium for Reliability and Reproducibility
is used by: DataLad
is recommended by: National Library of Medicine
lists: Dipy
lists: 3DMeshMetric
lists: MPScope
lists: VectorValuedHistogramNormalizer
lists: Faceted Search Based Ontology Visualizer
lists: Morphometry BIRN
lists: Colin 3T/7T High-resolution Atlas
lists: CMFreg
lists: BrainFX
lists: dinifti
lists: Center for Computational Biology at UCLA
lists: Convert MNI coordinates to or from XYZ
lists: Licensing issues in software and data
lists: Local Binary Pattern Analysis Tools for MR Brain Images
lists: MIView
lists: uManager
lists: Penn Hippocampus Atlas
lists: RapidArt
lists: Scribe
lists: ShapeWorks
lists: Vervet Probabilistic Atlas
lists: Talairach Daemon
lists: ADHD-200 Preprocessed Data
lists: LORIS - Longitudinal Online Research and Imaging System
lists: NVM
lists: Maps4Mipav (Exploratory JIST)
lists: Autism Tissue Program
lists: MEG Tools
lists: PyNIfTI
lists: LONI Visualization Tool
lists: Mind Research Network - COINS
lists: OpenElectrophy
lists: CIFTI Connectivity File Format
lists: 3DSlicerLupusLesionModule
lists: BrainNetworkConstructionAnalysisPlatform
lists: COMPARE
lists: Data Format Tools
lists: GesTr
lists: I/OWA
lists: MINC Example files
lists: cbiNifti: Matlab/Octave Nifti library
lists: BRAINSCut
lists: C-PAC
lists: Connectir
lists: DicomBrowser
lists: Hitachi Optical Topography System
lists: Net Station API
lists: imcalc: SPM batch image calculator
lists: BRAINSCortex
lists: Insight Segmentation and Registration Toolkit
lists: LONI Debabeler
lists: LONI Pipeline Processing Environment
lists: NiLearn
lists: MRI Studio
lists: BraVa
lists: Brede Wiki
lists: Center for Functional Neuroimaging Technologies
lists: Philips Users Community
lists: medInria
lists: Beijing: Eyes Open Eyes Closed Study
lists: vIST/e
lists: Camino
lists: Diffusion Tensor Imaging ToolKit
lists: TORTOISE
lists: NIDAG: Neuroimaging Data Access Group
lists: MRI CVPR
lists: vuTools
lists: Medical Image Processing and Visualization in Virtual Environments
lists: Brainstorm
lists: Atlas3D
lists: FMRISTAT - A general statistical analysis for fMRI data
lists: FreeSurfer
lists: Rosetta Bit
lists: Laboratory of Neuro Imaging
lists: Group ICA of fMRI Toolbox
lists: Hierarchical Attribute Matching Mechanism for Elastic Registration
lists: Internet Brain Segmentation Repository
lists: Neural ElectroMagnetic Ontologies (NEMO) Project
lists: Wavelet-based Image Fusion
lists: ITK-SNAP
lists: Internet Brain Volume Database
lists: Statistical non-Parametric Mapping
lists: VoxBo
lists: NITRC Computational Environment
lists: Spatially Constrained Parcellation
lists: Cluster reporter
lists: Cluster Extent Correction
lists: 4D Atlases Construction
lists: CIGAL
lists: CleanLine
lists: Computational Morphometry Toolkit
lists: Cognitive Paradigm Ontology
lists: aBEAT
lists: MR Connectome Automated Pipeline
lists: International Neuroinformatics Coordinating Facility
lists: Functional Regression Analysis of DTI Tract Statistics
lists: MCIC
lists: MGDM: Multi Geometric Deformable Model
lists: MIAS Registration Toolkit
lists: Medical Image Visualization and Analysis
lists: Microstructural correlation toolbox
lists: MisterI
lists: MriWatcher
lists: Multiple Correlation Function Tool
lists: NITRC Community Conferences Workshops and Meetings
lists: BRAINSFit
lists: INCF Software Center
lists: BrainVision Analyzer
lists: COGNISION
lists: DPARSF
lists: GLIRT
lists: MINC
lists: Group Level Imputation of Statistic Maps
lists: MRIcron
lists: Inter-Group Registration Toolbox
lists: MCML and CONV
lists: MEGSIM
lists: MIRIAD
lists: MRI Defacer
lists: MS lesion segmentation challenge 2008
lists: Measure Projection Toolbox
lists: Mindboggle
lists: Mindboggle-101 atlases
lists: ModelGUI
lists: Multi-Modal MRI Reproducibility Resource
lists: MultiTracer
lists: Multicomponent T2 estimation with stimulated echo correction
lists: NCANDA: Data Integration Component
lists: NFT
lists: Net Station EEG Software
lists: Network Based Statistic Toolbox
lists: NeuroScope
lists: Numerical Fibre Generator
lists: PSTNet: MRI Simulator
lists: cortex
lists: iBEAT
lists: M3
lists: Group ICA Of EEG Toolbox
lists: 4D-PARSeR Pathological Anatomy Regression via Segmentation and Registration
lists: Automatic Segmentation Tool Adapter
lists: DTI-TEMPLATE-RHESUS-MACAQUES
lists: LONI Provenance Editor
lists: MNI N3
lists: MRI Digital Projection System
lists: NIDB - Neuroinformatics Database
lists: NIPY
lists: NIRAL Utilities
lists: NIRx NIRS Neuroimaging
lists: NIRx2nirs: A NIRx to .nirs data converter
lists: NITRC Enhanced Services
lists: NITRC GForge Extensions
lists: NPTK
lists: NeuroImaging Analysis Kit (NIAK)
lists: NiBabel
lists: NiftyRec
lists: Nipype
lists: Nirfast
lists: Nitime
lists: Non-Rigid Image Registration Evaluation Project
lists: Normative Independent Component Analysis
lists: OEI: fMRI compatible olfactometer
lists: ORS Visual SI
lists: OpenMEEG
lists: PANDA
lists: PESTICA fMRI Physio Detection/Correction
lists: PHYCAA+: adaptive physiological noise correction for BOLD fMRI
lists: ParaView
lists: Parkinson’s Disease Biomarkers Program Data Management Resource (PDBP DMR)
lists: Presentation
lists: PySurfer
lists: Pythagorean Displacement and Motion Regressors
lists: Quantitative Diffusion Tools
lists: R-package for adaptive DWI analysis
lists: R-package for adaptive fMRI analysis
lists: REX
lists: RFT FDR
lists: ROBEX
lists: RT Image
lists: Resource Ontology Discussion Group
lists: Rodent Brain Extraction Tool
lists: Rodent Cortical Thickness Analysis
lists: S-rep Fitting Statistics and Segmentation
lists: SCIRun
lists: SCRalyze
lists: SOCK
lists: SPHARM-MAT
lists: SPHARM-PDM Toolbox
lists: SRI24 Atlas: Normal Adult Brain Anatomy
lists: Seg3D
lists: ShapeComplexAtlas
lists: Signed Differential Mapping
lists: Sleuth
lists: Slice:Drop
lists: Slicer3 Example Modules
lists: Source Information Flow Toolbox
lists: Spanish Resting State Network
lists: Spatial Analysis 3D
lists: Stereoscopic Atlas of Intrinsic Brain Networks
lists: UNC Infant 0-1-2 Atlases
lists: UNC Primate Brain Atlas
lists: XCEDE Schema
lists: peak nii
lists: pydicom
lists: pyxnat
lists: scikit-learn
lists: shapeAnalysisMANCOVA - SPHARM tools
lists: VMTK in 3D Slicer
lists: 3D Interactive Chemical Shift Imaging
lists: BRAINSSurfaceStats
lists: Brain lesion segmentation tool using SVM
lists: Diffusion Tractography with Kalman Filter
lists: Fast Nonlocal Means for MRI denoising
lists: Monte Carlo Simulation Software: tMCimg
lists: Web Interfaces for Multiscale Images
lists: STAPLE
lists: Segmentation Validation Engine
lists: Spatial Statistical Parametric Mapping
lists: SpineSegmentation module for 3DSlicer
lists: Stochastic Tractography System
lists: Subject Library
lists: TAPIR
lists: TARQUIN
lists: Template Image Processing Library
lists: TetraMetrix
lists: TractoR: Tractography with R
lists: Triangle BioSystems
lists: TumorSim
lists: TurtleSeg
lists: UNC Human Brain Atlas
lists: VR Worlds 2
lists: Vaa3D
lists: ValMap: simple statistical mapping tool
lists: WFU Biological Parametric Mapping Toolbox
lists: WFU Pipeline
lists: Working Memory Trainer
lists: vis: SPM Visualized Statistics toolbox
lists: Synchronized Histological Image Viewing Architecture
lists: LONI ShapeViewer
lists: LONI ShapeTools
lists: FFT Library
lists: Automated recognition of brain region mentions in neuroscience literature.
lists: NUTMEG
lists: Cognitive Atlas
lists: Mouse BIRN Atlasing Toolkit
lists: Temporal-Lobe: Hippocampal - Parahippocampal Neuroanatomy of the Rat
lists: FSL
lists: LEAD-DBS
lists: Brainscape
lists: EONS
lists: BioImage Suite
lists: ADNI - Alzheimer's Disease Neuroimaging Initiative
lists: MindSeer
lists: XNAT - The Extensible Neuroimaging Archive Toolkit
lists: brainmap.org
lists: ImageJ
lists: Neuroimaging Informatics Technology Initiative
lists: IMOD
lists: Statistics Online Computational Resource
lists: signalml.org
lists: Mouse Biomedical Informatics Research Network
lists: NIH MRI Study of Normal Brain Development
lists: MGH-USC Human Connectome Project
lists: Fusion ICA Toolbox
lists: Corpus Callosum Thickness Profile Analysis Pipeline
lists: ABIDE
lists: Mouse Connectome Project
lists: NITRC-IR
lists: Open Connectome Project
lists: neurodebian
lists: NIMH Data Archive
lists: ANTS - Advanced Normalization ToolS
lists: XNAT Extras
lists: TrackVis
lists: Brain Connectivity Toolbox
lists: FieldTrip
lists: LONI Inspector
lists: BrainLiner
lists: OpenNeuro
lists: Biomedical Informatics Research Network
lists: McConnell Brain Imaging Center MNI Macaque Atlas
lists: SINOMO
lists: DONE: Detection of Outlier NEurons
lists: Neuro Bureau
lists: ADHD-200 Sample
lists: 1000 Functional Connectomes Project
lists: PubBrain
lists: CBRAIN
lists: ENIGMA: Enhancing Neuro Imaging Genetics Through Meta-Analysis
lists: Bisque
lists: 3D Slicer
lists: Internet Analysis Tools Registry
lists: Neuromorphometrics
lists: Analysis of Functional NeuroImages
lists: Automated Image Registration
lists: BASH4RfMRI
lists: MNE software
lists: Object-Oriented Development Interface for NMR
lists: NYU CSC TestRetest
lists: Optseq - fMRI Event Scheduler
lists: TOADS-CRUISE Brain Segmentation Tools
lists: MouseTracker
lists: Hammer And WML Modules for 3D Slicer
lists: ABC (Atlas Based Classification)
lists: Allen Brain Atlas API
lists: Viking Viewer for Connectomics
lists: ARCTIC
lists: ArtRepair for robust fMRI
lists: Automatic Registration Toolbox
lists: Artifact Detection Tools
lists: Segmentation of Hippocampus Subfields
lists: ASL data processing tool box
lists: Bioelectromagnetism Matlab Toolbox
lists: PyMVPA
lists: Human Imaging Database
lists: BrainImage Software
lists: Brede Toolbox
lists: Computerized Anatomical Reconstruction and Editing Toolkit
lists: BrainColor: Collaborative Open Labeling Online Resource
lists: Registry Builder Data Harmonization and Aggregation Tool
lists: PsychoPy
lists: NiftySim
lists: NiftyReg
lists: Neurobiological Image Management System
lists: BRAINSTools
lists: MeshValmet: Validation Metric for Meshes
lists: BrainSuite
lists: DW-MRI Random Walk Simulator
lists: Web Game for Collaborative Labeling
lists: BrainVoyager Brain Tutor
lists: POLGUI - Matlab Polhemus Interface
lists: BrainVoyager Brain Viewer
lists: NeuroPub Visualizer
lists: NODDI Matlab Toolbox
lists: MITK Diffusion
lists: Federal Interagency Traumatic Brain Injury Research Informatics System
lists: BrainMaps.org
lists: PRoNTo
lists: Scalable Brain Atlas
lists: NIH Human Connectome Project
lists: Mesh-based Monte Carlo (MMC)
lists: Matlab Neuroshare Library
lists: MRtrix
lists: MABMIS: Multi-Atlas Based Multi-Image Segmentation
lists: Monte Carlo eXtreme
lists: Whole Brain Catalog
lists: BCILAB
lists: ABSORB: Atlas Building by Self-Organized Registration and Bundling
lists: VAMCA
lists: SPM
lists: Low Resolution Electromagnetic Tomography
lists: SurfStat
lists: Cambridge Brain Activation
lists: CLEAVE
lists: CoCoMac
lists: fMRI Data Center
lists: Function BIRN
lists: EEGLAB
lists: BrainVISA / Anatomist
lists: MIPAV: Medical Image Processing and Visualization
lists: NeuroLens
lists: WFU PickAtlas
lists: Open Access Series of Imaging Studies
lists: BioSig: An Imaging Bioinformatics System for Phenotypic Analysis
lists: xjView: A Viewing Program For SPM
lists: Human Connectome Coordination Facility
lists: ASL spm8
lists: Integrated Manually Extracted Annotation
lists: JIST: Java Image Science Toolkit
lists: Functional Analysis of Diffusion Tensor
lists: AHEAD
lists: ANTsR
lists: 3DBar
lists: Cancer Imaging Archive (TCIA)
lists: Pediatric Imaging Neurocognition and Genetics
lists: Atlasing of the basal ganglia
lists: cmrep
lists: 3D DTI Atlas of the Rat Brain In Postnatal Day 5 14 and Adulthood
lists: AutoSeg
lists: BXH/XCEDE Tools
lists: Baby Brain Toolkit
lists: Best Practices for Software Development
lists: Brain Catalogue
lists: Draw3D and Meshinator
lists: Brain Segmentation Testing Protocol
lists: BrainNet Viewer
lists: BrainSolution
lists: Brainvox
lists: C8: Corpus Callosum Computations
lists: CAMINO-TRACKVIS
lists: CANDI Share: Schizophrenia Bulletin 2008
lists: CBS High-Res Brain Processing Tools
lists: CCSeg - Corpus Callosum Segmentation
lists: Cerebral Blood Flow Database and Analysis Pipeline
lists: Create DWI Atlas
lists: DFBIdb
lists: DIAMOND
lists: DICOM UploadGUI
lists: DOTS WM tract segmentation
lists: DTI Fiber Tract Statistics
lists: DW-MRI registration in FSL
lists: DbGaP Cleaner
lists: DentalTools
lists: Diffusion MRI - In-vivo and Phantom Data
lists: Diffusion MRI at DKFZ Heidelberg
lists: Diffusion Warp
lists: Disease State Prediction
lists: EEG human categorization data
lists: Epsilon Radial Networks
lists: FBIRN Image Processing Scripts
lists: FSL extensions
lists: False Discovery Rate Weighted
lists: Fiber Tracking Tool
lists: Fiber-tracking based on Finsler distance
lists: FiberViewerLight
lists: Finsler tractography module for Slicer
lists: Fluid Registration and Atlas Toolkit
lists: Framework for Open Programmatic Access
lists: Functional Connectivity Community
lists: Functional ROI Atlas
lists: Functional and Structural Neuroimaging Journals Listing
lists: GAMBIT
lists: GAMMA
lists: BRAINSMush
lists: GPU based affine registration
lists: GRETNA
lists: Generalized Covariance Analysis
lists: Generalized PPI Toolbox
lists: Group Information Guided ICA
lists: Groupwise Image Registration Toolbox
lists: HD Neuro-Informatics
lists: Hitachi2nirs
lists: IDeA Lab brain image processing suite
lists: INCF Neuroimaging Data Sharing
lists: INIA19 Primate Brain Atlas
lists: JHU Proj. in Applied Medical Imaging
lists: JIST Resources for Algorithm Development
lists: BRAINSROIAuto
lists: Joint Anisotropic LMMSE Filter for Stationary Rician noise removal in DWI
lists: Landman NeuroImaging Tools
lists: Local Label Learning Segmentation
lists: MASI Label Fusion
lists: MASIMatlab
lists: MATLAB Tutorial on Diffusion Tensor MRI
lists: Multi-Echo Independent Component Regression Group-Level Connectivity Dataset
lists: Multi-fiber Reconstruction from DW-MRI
lists: NITRC Books
lists: Network Modification Tool Lite
lists: Non-rigid groupwise registration method
lists: Rockland Download Link Script
lists: Subject Order-Independent Group ICA
lists: Task Independent Fluctuations Discussion
lists: UNC Human DTI Brain Atlas
lists: BRAINSTestData
lists: cPPI Toolbox for fMRI
lists: fMRI Classification in R
lists: fMRI-CPCA
lists: fNIRS Data Analysis Environment
lists: factory t1 dti
lists: BRAINSDemonWarp
lists: AMILab
lists: ADJUST
lists: ALVIN
lists: Age Related Atrophy Dataset
lists: B0 and eddy current correction for DTI
lists: BESA
lists: BSMac
lists: BVQXtools
lists: BioMesh3D
lists: BrainBrowser
lists: BrainGraph Editor
lists: BrainMagix SPM Viewer
lists: BrainMask Volume Processing Tool
lists: Brainsight
lists: Brainwaver
lists: CANDI Neuroimaging Access Point
lists: CBFBIRN
lists: CDF-HC PointSetReg
lists: GIMIAS
lists: CURRY
lists: CalaTK
lists: CoCoMac-Paxinos3D viewer
lists: INVIZIAN
lists: CONN
lists: Connectome File Format
lists: Connectome Viewer
lists: Cytoseg
lists: DICCCOL predictor
lists: DRAMMS
lists: DSI Studio
lists: Level-set Segmentation for Slicer3
lists: DTI BrainImageScope
lists: DTI-Reg
lists: DTIProcess ToolKit
lists: DWI/DTI Quality Control Tool: DTIPrep
lists: Diffusional Kurtosis Estimator
lists: Distributome
lists: ImageVis3D
lists: E-Prime
lists: E-Prime Extensions for fMRI
lists: EEGVIS
lists: EEProbe
lists: EMSE Suite
lists: LONI Brain Parser
lists: EPILAB
lists: ERPLAB
lists: FIV
lists: FMRIpower
lists: Fiber Optic Button Response System
lists: Free-D
lists: GIFTI
lists: GMAC: A Matlab toolbox for spectral Granger causality analysis of fMRI data
lists: HAMMER Suite
lists: HERMES
lists: HI-SPEED Software Packets
lists: Homer2
lists: IIT Human Brain Atlas
lists: JIP Analysis Toolkit
lists: Jim
lists: LDDMM
lists: LIBEEP
lists: LIMO EEG
lists: LONI De-identification Debablet
lists: Waxholm Space
lists: Lipsia
lists: Lumina LP- 400 Response System
lists: MRI Dataset for Hippocampus Segmentation
lists: MaCH-Admix
lists: Mach2dat
lists: Mag Design and Engineering
lists: MagVenture: MagPro Magnetic Stimulator
lists: SR Research EyeLink Eye Trackers
lists: Mango
lists: Manually Labeled MRI Brain Scan Database
lists: MarsBaR region of interest toolbox for SPM
lists: MazeSuite
lists: MoTrak Head Motion Tracking System
lists: NCIGT Fast Imaging Library
lists: NeuroWeb - NeuroImaging Database
lists: Neuroimaging Made Easy Blog
lists: Neurophysiological Biomarker Toolbox
lists: SVV
lists: Slicer3 Module Rician noise filter
lists: UNC/Utah NAMIC DTI Fiber Analysis Framework
lists: caGWAS
lists: eConnectome
lists: elastix
lists: fMRI Artefact rejection and Sleep Scoring Toolbox
lists: MACH
lists: fMRI Grocer
lists: fNIR Devices
lists: fanDTasia Java Applet: DT-MRI Processing
lists: g.BSanalyze
lists: iTools
lists: iView X MRI-LR - Eye Tracking for fMRI
lists: map3d
lists: NICE-SIGN
lists: NIRS-SPM
lists: NITRC Community
lists: NordicNeuroLab
lists: PICSL Multi-Atlas Segmentation Tool
lists: Paradigm
lists: Pipeline Neuroimaging VirtualEnvironment
lists: Pipeline System for Octave and Matlab
lists: ProbabilisticBiasCorrection
lists: Program for optimal design of blocked fMRI experiments
lists: QCQP
lists: REST: a toolkit for resting-state fMRI
lists: Robust Biological Parametric Mapping
lists: SPM SS - fMRI functional localizers
lists: Solar Eclipse Imaging Genetics tools
lists: VPixx: VIEWPixx /3D
lists: resting-state pediatric imaging template
lists: DATAPixx
lists: GTRACT
lists: Wisconsin White Matter Hyperintensities Segmentation Toolbox
lists: COBRE
lists: AngioCalc Cerebral Aneurysm Calculator
lists: USC Multimodal Connectivity Database
lists: BRAINSConstellationDetector
lists: ASA - Advanced Source Analysis
lists: BRAINSTracer
lists: EYE-EEG (combined eye-tracking & EEG)
lists: BrainVoyager
lists: Mean Machine
lists: ERP PCA Toolkit
lists: LiverSegm
lists: GSA-SNP
lists: FastICA
lists: DTI Atlas Builder
lists: Neuroimaging in Python
lists: Brain Decoder Toolbox
lists: iso2mesh
lists: CUDA-SPHERE-FWD-MEEG
lists: BrainCSI
lists: BrainVisa Morphology extensions
lists: VPixx: VIEWPixx
lists: VPixx: PROPixx
lists: GenGen
lists: MACH 1.0
lists: PennCNV
lists: SumsDB
lists: Integrated Software
lists: NeuroLex
lists: Parkinson's Progression Markers Initiative
lists: NeuroSynth
lists: Textpresso
lists: ANNOVAR
lists: Graphtools
lists: Grantees Meeting for NITRC
lists: FP-CIT SPECT brain template in MNI space
lists: Brain Computer Interface 2000 Software Package
lists: BEAST
lists: Brian Simulator
lists: Connectome Workbench
lists: ConnectomeDB
lists: DIAN - Dominantly Inherited Alzheimer Network
lists: NKI-RS Enhanced Sample
lists: EPILEPSIE database
lists: GEneral NEural SImulation System: The Neurospaces Project
lists: Hippocampome.org
lists: Kitware
lists: Kymata Atlas
lists: L-Measure
lists: MDR
lists: neuroConstruct
lists: Neurolucida
lists: NeuroMorpho.Org
lists: NEURON
lists: NeuronJ: An ImageJ Plugin for Neurite Tracing and Quantification
lists: NeuroVault
lists: National Institute on Aging Genetics of Alzheimer’s Disease Data Storage Site (NIAGADS)
lists: NINDS Repository
lists: NKI/Rockland Sample
lists: ODIN
lists: OBART
lists: Open Science Framework
lists: PLINK
lists: MBF BioScience: Stereo Investigator
lists: studyforrest.org
lists: Virtual brain
lists: TREES toolbox
lists: APERTURE
lists: 3dsvm
lists: 7T Structural MRI scans ATAG
lists: Atlases of amygdala and hippocampus for pediatric populations
lists: BetA-Series COrrelation
lists: bic-mni-models
lists: BiofilmQuant
lists: Biomag Discussion Group on Yahoo
lists: Brain Entropy in space and time (BEst)
lists: Brainnetome Atlas Viewer
lists: Brainnetome fMRI toolkit
lists: BROCCOLI
lists: C-MIND Database
lists: CARLsim: a GPU-accelerated SNN Simulator
lists: Clinical Toolbox for SPM
lists: CMIND PY
lists: COST
lists: dcm2nii
lists: DICOMConvert
lists: Displacement Field Viewer
lists: DTI denoising
lists: Efficient Longitudinal Upload of Depression in the Elderly (ELUDE)
lists: Efficient Permutation Testing
lists: DTI-TK
lists: ERPwavelab
lists: ExPosition Packages
lists: Fast T2 relaxation data analysis with stimulated echo correction and non-local spatial regularisation
lists: Forward: Accurate finite element electromagnetic head models
lists: freesurfR
lists: Functional Connectivity Analysis Tool for near-infrared spectroscopy data
lists: GazeReader
lists: gCCA
lists: Generation R Pediatric MRI Resources
lists: GIMME
lists: GLMdenoise: a fast, automated technique for denoising task-based fMRI data
lists: GraphVar: A toolbox for comprehensive graph analyses of functional brain connectivity
lists: HAMMER: Deformable Registration
lists: HBM Hackathon
lists: HDBIG
lists: High-quality diffusion-weighted imaging of Parkinsons disease
lists: MGA - Multimodal Glioma Analysis
lists: Image Synthesis Tools
lists: Imeka Tractography Service
lists: International Imaging Genetics Conference
lists: Intrinsic Unscented Kalman Filter (IUKF) Tractography Software v1.0
lists: Iterative dual-regression with sparse prior
lists: Joint Anisotropic LMMSE Filter for Stationary Rician noise removal in DWI
lists: KWScene: MRML-based Atlas and Scene Builder/Reader/Writer
lists: L-Neuron
lists: Laplace Beltrami Filter on QuadEdge Meshes
lists: libSBML
lists: Lightweight Data Pipeline
lists: Longitudinal MS Lesion Imaging Archive
lists: MARS (Multi-Atlas Robust Segmentation)
lists: minc-toolkit
lists: minc-toolkit-testsuite
lists: MISST - Microstructure Imaging Sequence Simulation ToolBox
lists: MRI Neuroanatomy Labeling Services
lists: MRIcroS
lists: Multivariate General Linear Models (MGLM) on Riemannian Manifolds
lists: Neoseg
lists: NeoSegPipeline
lists: NeuriteTracer
lists: NeuroElf
lists: Neuron-C
lists: NIH Pediatric MRI Data Repository
lists: NIH-CIDI Lung Segmentation Tool
lists: NiiStat
lists: Northwestern University Schizophrenia Data and Software Tool (NUSDAST)
lists: Notion ResearchPACS
lists: NTU-DSI-122: a DSI template in ICBM-152 space
lists: OpenViBE
lists: OpenWalnut
lists: Orientation Distribution Function in Constant Solid Angle (CSA-ODF)
lists: Parkinsons Disease Discovery Database
lists: Prediction and Diagnosis for Depression and Schizophrenia
lists: Preprocessed Connectomes Project
lists: Principal Components Analysis of Scalar, Vector, and Mesh Vertex Data
lists: Ruby NIfTI
lists: SCORE
lists: SFMProject
lists: ShapePopulationViewer
lists: Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
lists: SPIKECOR: fMRI tool for automated correction of head motion spikes
lists: Spinal Cord Toolbox
lists: Stark Cross-Sectional Aging
lists: Brain Coactivation Map
lists: Multiscale Object Orientation Simulation Environment
lists: Striatal Subregional VOImap
lists: Topographica
lists: Turbo-BrainVoyager
lists: CRL Unbiased and Deformable Spatiotemporal Atlas of the Fetal Brain
lists: UNC-Wisconsin Neurodevelopment Rhesus MRI Database
lists: Virtual Electrode Recording Tool for EXtracellular potentials (VERTEX)
lists: VMTK in 3D Slicer
lists: Wisconsin Cortical Thickness Analysis (CTA) Toolbox
lists: XFSL: An FSL toolbox
lists: XNBC
lists: YMDTI: Diffusion Tensor Images of Healthy Young Males
lists: BraTumIA (Brain Tumor Image Analysis)
lists: CAWorks
lists: Functional Real-time Interactive Endogenous Neuromodulation and Decoding (FRIEND)
lists: Graph Theory GLM (GTG) MATLAB Toolbox
lists: Functional Mixed Processes Models
lists: Papaya
lists: Parallel Stochastic Ion Channel Simulator
lists: Advanced Connectivity Analysis (ACA)
lists: International Imaging Genetics Conference
lists: Analyze Software System
lists: Optseq
lists: ENIGMA-DTI Pipeline
lists: Umea Brain Arteries
lists: MetaSearch
lists: BrainBox
lists: BluePyOpt
lists: MultiXplore
lists: Automatic Tractography-based Parcellation Pipeline
lists: Epilepsy T1 and Hippocampal Segmentation Datasets
lists: Mixed Effect Model of Genetic-Set and Environment Interaction
lists: masked ICA (mICA) Toolbox
lists: Altered States Database
lists: User Friendly Functional Connectivity - UF²C
lists: Intra- and inter-scanner reliability of RS-fMRI BOLD and ASL with eyes closed vs. eyes open
lists: Region to Region
lists: Waxholm Space Atlas of the Sprague Dawley Rat Brain
lists: Nutil - Neuroimaging utilities
lists: MeshView
lists: vini: A viewer for fMRI data
lists: brainGraph
lists: Diffusion Toolkit
lists: Neurodocker
lists: HeuDiConv: a heuristic-centric DICOM converter
lists: Knowing what you know (kwyk) - Bayesian Brain Parcellation
lists: Rhesus Macaque Brain Atlases
lists: MIITRA atlas
lists: MonkeyCBP
lists: ReproNim/containers
lists: ReproMan
lists: ABCD-ReproNim Course
lists: Ventricular Morphometry Analysis System
lists: ONPRC18 Multimodal MRI Atlas
lists: volBrain
lists: Waxholm Space
is affiliated with: Manual Align RTS2000
is related to: University of California; San Diego;National Center for Microscopy and Imaging Research - NCMIR
has parent organization: Harvard University; Cambridge; United States
has parent organization: NIH Blueprint for Neuroscience Research
is parent organization of: Licensing issues in software and data
is parent organization of: NITRC Enhanced Services
is parent organization of: Resource Ontology Discussion Group
is parent organization of: NITRC-IR
is parent organization of: 1000 Functional Connectomes Project
is parent organization of: NYU CSC TestRetest
is parent organization of: NITRC Books
is parent organization of: NITRC Community
is parent organization of: ABIDE
is parent organization of: COBRE
is parent organization of: Group Sparse Canonical Correlation Analysis
is parent organization of: Challenge Competitions Collection
is parent organization of: 1000 Functional Connectomes Project
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NIBIB U24 EB023398;
NIDA ;
NIH Blueprint for Neuroscience Research ;
NIMH ;
NINDS R44 NS074540 |
PMID:26044860
PMID:18999128 |
Free, Freely available |
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nif-0000-00202, r3d100010784, r3d100011515 |
https://doi.org/10.17616/R3W32N |
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SCR_003430 |
Neuroimaging Informatics Tools and Resources Clearinghouse, , NeuroImaging Tools and Resources Collaboratory, Neuroimaging Informatics Tools Resources Clearinghouse, NITRC - Neuroimaging Informatics Tools and Resources Clearinghouse, NITRC - Neuroimaging Informatics Tools Resources Clearinghouse |
2026-08-21 12:37:09 |
374 |
Yale University; Connecticut; USA
Resource Report
Resource Website
10+ mentions
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Yale University; Connecticut; USA (RRID:SCR_006352)
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university
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Private Ivy League research university in New Haven, Connecticut. Founded in 1701 as the Collegiate School, it is the third-oldest institution of higher education in the United States and one of the nine Colonial Colleges chartered before the American Revolution.
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uses: ShareLaTeX
uses: ReadCube
uses: Scizzle
uses: Research Accelerator
is affiliated with: Diabetes Research Centers
is related to: LINCS Information Framework
is related to: Clinical and Translational Science Awards Consortium
is related to: ShareLaTeX
is related to: LungMap
is related to: Center for Expanded Data Annotation and Retrieval
is parent organization of: Interolog/Regulog Database
is parent organization of: BreakSeq
is parent organization of: CGSC
is parent organization of: BioImage Suite
is parent organization of: Brain Pharmacological Database
is parent organization of: NeuronDB
is parent organization of: ISPS Data Archive
is parent organization of: Yale Rudd Center for Food Policy and Obesity
is parent organization of: AGE
is parent organization of: PeakSeq
is parent organization of: NEURON
is parent organization of: X-Tile
is parent organization of: TRIPLES- a database of TRansposon-Insertion Phenotypes Localization and Expression in Saccharomyces
is parent organization of: Yale School of Medicine; Connecticut; USA
is parent organization of: ModelDB
is parent organization of: SenseLab
is parent organization of: Cell Properties Database
is parent organization of: Odor Molecules DataBase
is parent organization of: Olfactory Bulb Odor Map DataBase (OdorMapDB)
is parent organization of: MolMovDB - Database of Macromolecular Movements
is parent organization of: George E. Palade EM Slide Collection.
is parent organization of: Herzon Lab
is parent organization of: Yale DNA Analysis Facility
is parent organization of: Yale University Labs and Facilities
is parent organization of: FlyTrap- GFP Protein Trap Database
is parent organization of: WormGUIDES
is parent organization of: Human Brain Transcriptome
is parent organization of: Spatio-temporal transcriptome of the human brain
is parent organization of: Crystallography and NMR System (CNS)
is parent organization of: VDJ Server
is parent organization of: Yale Diabetes Research Center Diabetes Translational Core Facility
is parent organization of: Yale Diabetes Research Center Cell Biology Core Facility
is parent organization of: Yale Diabetes Research Center Administrative Core Facility
is parent organization of: Yale Diabetes Research Center Molecular Core Facility
is parent organization of: Yale Diabetes Research Center Clinical Metabolism Core Facility
is parent organization of: Yale Diabetes Research Center Physiology Core Facility
is parent organization of: Yale Diabetes Research Center Molecular Genetics Core
is parent organization of: Yale Diabetes Research Center
is parent organization of: Human Neocortical Neurosolver
is parent organization of: NEURON
is parent organization of: Macaque Brain Resource
is parent organization of: Webcutter
is parent organization of: Yale University Chemical and Biophysical Instrumentation Center Core Facility
is parent organization of: Yoda Project
is parent organization of: Yale University West Campus Imaging Core Facility
is parent organization of: CRISPRscan
is parent organization of: Yale University Wu Tsai Institute BrainWorks Core Facility
is parent organization of: MAP Database Guide for Membrane Protein Solubilization
is parent organization of: Yale Center for Genome Analysis Core Facility
is parent organization of: Yale Irradiator Shared Resource Core Facility
is parent organization of: Yale University Wu Tsai Institute Microscopy Shared Core Facility
is parent organization of: Yale Center for Molecular Discovery YCMD Core Facility
is parent organization of: Yale University West Campus Analytical Core Facility
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, nlx_27118, GRID grid.47100.32, Crossref Funder ID 100005326, ISNI 0000 0004 1936 8710, Wikidata Q49112 |
https://ror.org/03v76x132 |
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SCR_006352 |
YALE |
2026-08-21 12:37:46 |
21 |
MUlti SImulation Coordinator
Resource Report
Resource Website
100+ mentions
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MUlti SImulation Coordinator (RRID:SCR_001756)
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MUSIC
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simulation software, software application, software resource
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Software that allows large scale neuron simulators to communicate during runtime. It allows exchange of data among parallel applications in a cluster environment, interconnects large-scale neuronal network simulators with each other or with other tools, participates in multi-simulations, and is continuously developed and extended. Three simulators currently have MUSIC interfaces: Moose, NEURON and NEST. Three applications execute in parallel while exchanging data via MUSIC. The software interface promotes interoperability by allowing models written for different simulators to be simulated together in a larger system. It enables re-usability of models or tools by providing a standard interface. As data are distributed over a number of processors, it is non-trivial to coordinate data transfer so that it reaches the correct destination at the correct time. Current and future simulators can make use of MUSIC - compliant general purpose tools and participate in multi-simulations, for example when: * Different parts of a complex nervous system model are optimally implemented in different simulators, and need to communicate with each other. * Post-processing of generated data is needed, where the amounts of data are too large for intermediate storage, and requires the simulator to pass the data directly to the post-processing module. A standard interface enables straight-forward independent third-party development and community sharing of interoperable software tools for parallel processing. * Library and utilities are written in C++, uses MPI. * It is possible to add a MUSIC interface to existing simulators. * Works independently, no assumptions are made about other applications to facilitate development of general purpose tools. * Performance Data transport with high bandwidth and low latency.
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modeling, multi-simulation, nervous system, network, neural, parallel processing, simulator, simulation
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is related to: NEST Simulator
is related to: Multiscale Object Orientation Simulation Environment
is related to: NEURON
has parent organization: International Neuroinformatics Coordinating Facility
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International Neuroinformatics Coordinating Facility |
PMID:20195795 |
Free, Available for download, Freely Available |
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nif-0000-10265 |
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http://www.incf.org/programs/modeling/music |
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SCR_001756 |
INCF MUSIC simulator |
2026-08-21 12:36:29 |
204 |
NetPyNE
Resource Report
Resource Website
10+ mentions
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NetPyNE (RRID:SCR_014758)
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data analysis software, data processing software, network analysis software, software application, software resource
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Software Python package for simulation and analysis of neuronal networks using the NEURON simulator.Used to facilitate development, parallel simulation, analysis, and optimization of biological neuronal networks.
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Simulation, analysis, neuronal, network, NEURON, simulator, BRAIN Initiative
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uses: Python Programming Language
is recommended by: BRAIN Initiative
works with: NEURON
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NIBIB EB022903 |
DOI:10.7554/eLife.44494.001 |
Free, Available for download, Freely available |
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http://www.neurosimlab.org/netpyne/overview.html |
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SCR_014758 |
Network development Python package for NEURON |
2026-08-21 12:40:07 |
27 |
IonChannelGenealogy
Resource Report
Resource Website
1+ mentions
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IonChannelGenealogy (RRID:SCR_014194)
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ICG
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data or information resource, database
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A database that provides a comprehensive and quantitative assay of ion channel models currently available in the neuroscientific modeling community. Specifically, it contains analyses of the ion channel models from NEURON. The database quantifies the similarity in kinetics between models using a series of standardized voltage clamp simulation protocols and subsequent cluster analysis. Citation links and duplications of channels, along with similarity of kinetics between channel models, are combined into genealogical trees and dendrograms that are searchable through the ICG web interface. ICG also experimentally recorded current traces and provides tools for uploading new channel models.
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database, ion channel model, neuron, kinetic, dendrogram, genealogical tree
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uses: NEURON
has parent organization: University of Oxford; Oxford; United Kingdom
has parent organization: Ecole Polytechnique Federale de Lausanne; Lausanne; Switzerland
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Available to the research community, The community can contribute to this resource |
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SCR_014194 |
ICGenealogy |
2026-08-21 12:40:13 |
7 |
Topographica
Resource Report
Resource Website
1+ mentions
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Topographica (RRID:SCR_014174)
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simulation software, software application, software resource
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A software package for computational modeling of neural maps developed as part of the NIMH Human Brain Project. Topographica focuses on the large-scale structure and function that is visible only when many thousands of such neurons are connected into topographic maps containing millions of connections. The software package provides a general-purpose framework for building models at this level, at an appropriate level of detail and complexity, as determined by the available computing power, phenomena of interest, and amount of biological data available for validation. It is intended to complement low-level neuron simulators that are available, such as General Neural Simulation System and NEURON.
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computational modeling, neural map, simulation software, neuron
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is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: General Neural Simulation System
is related to: NEURON
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NIMH Human Brain Project 1R01-MH66991 |
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SCR_014174 |
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2026-08-21 12:40:13 |
5 |
PyPNS
Resource Report
Resource Website
1+ mentions
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PyPNS (RRID:SCR_016336)
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PyPNS
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simulation software, software application, software resource
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Python based software module for the simulation of peripheral nerves. Used in the field of computational neuroscience.
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model, build, design, nerve, peripheral, network, neuron, Python, interface, neuroscience, computation
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is related to: NEURON
has parent organization: Imperial College London; London; United Kingdom
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EPSRC EP/N014529/1;
EPSRC grant EP/L016737/1;
Galvani Bioelectronics |
DOI:10.1007/s12021-018-9383-z |
Free, Available for download, Freely available |
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SCR_016336 |
Python Peripheral Nerve Simulator |
2026-08-21 12:41:03 |
1 |
neuronPM
Resource Report
Resource Website
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neuronPM (RRID:SCR_014768)
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software application, software resource, standalone software
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Client/server application that makes parameter maps for neural simulations written in NEURON.
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simulator map, parameter map, neural simulation, neuron, client application, server application
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uses: NEURON
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Available for download |
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SCR_014768 |
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2026-08-21 12:40:26 |
0 |
SimTracker
Resource Report
Resource Website
1+ mentions
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SimTracker (RRID:SCR_014735)
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software application, software resource, standalone software
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MATLAB-based tool for use with NEURON network models. It supports the modeler with model design, organization, execution (including on supercomputers), analysis, and reproducibility.
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matlab, simulation, neuron, neuron network model, model design, model organization, model execution, model analysis, model reproducibility
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uses: MATLAB
works with: NEURON
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DOI:10.1101/081927 |
Available for download |
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SCR_014735 |
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2026-08-21 12:40:27 |
1 |
