Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Metabolomics Workbench Resource Report Resource Website 500+ mentions |
Metabolomics Workbench (RRID:SCR_013794) | MetWB | data or information resource, data repository, service resource, storage service resource | Repository for metabolomics data and metadata which provides analysis tools and access to various resources. NIH grantees may upload data and general users can search metabolomics database. Provides protocols for sample preparation and analysis, information about NIH Metabolomics Program, data sharing guidelines, funding opportunities, services offered by its Regional Comprehensive Metabolomics Resource Cores (RCMRC)s, and training workshops. | repository, metabolomics, database, funding, training, protocol, bio.tools, FASEB list, DRKB |
is used by: NIH Heal Project is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases lists: NIH Metabolomics program lists: MetaCore lists: JMP lists: STATISTICA lists: Spotfire lists: Coordination of Standards in Metabolomics lists: MetaboLights lists: MetabolomeXchange lists: Metabolomics Society lists: Birmingham Metabolite Library lists: Glycan Mass Spectral Database (GMDB) lists: Mass Spectral Library lists: mzCloud lists: MetabolomeExpress lists: Spectral Database System (SDBS) lists: CTSgetR lists: Hierarchical Clustering lists: imDEV lists: Linear Discriminant Analysis lists: Principal Components Analysis lists: mwtabR lists: 3Omics lists: ACD/ NMR Processor lists: NIST Mass Spectrometry Data Center lists: Chemical Translation Service lists: Chenomx NMR Suite lists: DeviumWeb lists: MBRole lists: MetaMapR lists: MetaP lists: Metscape lists: SIMCA lists: TeachingDemos is listed by: NIH Data Sharing Repositories is listed by: bio.tools is listed by: Debian is listed by: re3data.org is listed by: DataCite has parent organization: University of California; California; USA is parent organization of: Metabolomics Workbench Metabolite Database |
NIDDK DK141185; NIH |
Free, Freely available | biotools:Metabolomics_Workbench, r3d100012314 | https://bio.tools/Metabolomics_Workbench, https://api.datacite.org/dois?prefix=10.21228 | SCR_013794 | SciCrunch Registry | Metabolomics Workbench, MetWB, UCSD Metabolomics Workbench, Metabolomics Workbench (MetWB) | 2026-11-07 11:58:15 | 666 | |||||
|
Metabolomics Workbench Metabolite Database Resource Report Resource Website |
Metabolomics Workbench Metabolite Database (RRID:SCR_014633) | data or information resource, database | A database which contains structures and annotations of biologically relevant metabolites from public repositories such as LIPID MAPS, ChEBI, HMDB, PubChem, and KEGG. Users can search for molecular structure based on substructure, text, or mass. | database, metabolomics, metabolite, structure, annotation | has parent organization: Metabolomics Workbench | Public | SCR_014633 | SciCrunch Registry | UCSD Metabolomics Workbench Metabolite Database, Metabolomics Workbench Database | 2026-11-07 12:03:14 | 0 | |||||||||
|
MetaCore Resource Report Resource Website 1000+ mentions |
MetaCore (RRID:SCR_008125) | data analysis software, data processing software, software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on March 17, 2022. An integrated software suite for functional analysis of experimental data. The scope of data types includes microarray and SAGE gene expression, SNPs and CGH arrays, proteomics, metabolomics, pathway analysis, Y2H and other custom interactions. MetaCore is based on a proprietary manually curated database of human protein-protein, protein-DNA and protein compound interactions, metabolic and signaling pathways and the effects of bioactive molecules in gene expression. | expression, gene, dna, interaction, metabolomics, microarray, pathway, protein, proteomic, software | is listed by: Metabolomics Workbench | THIS RESOURCE IS NO LONGER IN SERVICE. | nif-0000-20874 | http://www.genego.com/metacore.php | SCR_008125 | SciCrunch Registry | 2026-11-07 11:56:22 | 1182 | ||||||||
|
University of California; California; USA Resource Report Resource Website 1+ mentions |
University of California; California; USA (RRID:SCR_011617) | UC, UC System | university | Public research university system in the U.S. state of California with campuses at Berkeley, Davis, Irvine, Los Angeles, Merced, Riverside, San Diego, San Francisco, Santa Barbara, and Santa Cruz, along with numerous research centers and academic abroad centers. |
lists: Biocode Commons lists: UC Davis Social Science Data Service is parent organization of: DOE Joint Genome Institute is parent organization of: California Digital Library is parent organization of: University of California at San Francisco; California; USA is parent organization of: Lawrence Berkeley National Laboratory is parent organization of: University of California at Berkeley; Berkeley; USA is parent organization of: University of California at Irvine; California; USA is parent organization of: University of California at Los Angeles; California; USA is parent organization of: University of California at Merced; California; USA is parent organization of: University of California at Riverside; California; USA is parent organization of: University of California at Santa Barbara; California; USA is parent organization of: University of California at Santa Cruz; California; USA is parent organization of: University of California at San Diego; California; USA is parent organization of: University of California at Davis; California; USA is parent organization of: eDoctoring is parent organization of: Berkeley Seismological Laboratory is parent organization of: eScholarship is parent organization of: California Coastal Atlas is parent organization of: Biocode Commons is parent organization of: Center for Research in Biological Systems is parent organization of: DMPTool is parent organization of: Comprehensive Everglades Restoration Plan is parent organization of: DataMares is parent organization of: Drug Design Data Resource is parent organization of: EarthCube is parent organization of: CCHDO is parent organization of: Geotechnical Extreme Events Reconnaissance is parent organization of: CRCNS is parent organization of: Engineering Biology Research Consortium is parent organization of: iDASH is parent organization of: LBNL OpenMSI is parent organization of: Kavli Institute for Theoretical Physics Online Talks is parent organization of: National Center for Ecological Analysis and Synthesis is parent organization of: Marine and Coastal Research Institute of Columbia; Santa Marta; Colombia is parent organization of: Ocean Protection Council is parent organization of: Nightingale Open Science is parent organization of: EarthRef is parent organization of: Arctic Data Center is parent organization of: Open Context is parent organization of: OpenTopography is parent organization of: Open Tree of Life is parent organization of: Open Data Commons for Spinal Cord Injury is parent organization of: Project Production Systems Laboratory is parent organization of: UC Berkeley Research IT is parent organization of: SDSC Center for Applied Internet Data Analysis is parent organization of: Triton Shared Computing Cluster is parent organization of: University of California Press is parent organization of: UC Medical Humanities Consortium is parent organization of: UC Natural Reserve System is parent organization of: Center for Effective Global Action is parent organization of: UC Davis eScholarship is parent organization of: Partnership for Interdisciplinary Studies of Coastal Oceans is parent organization of: Coastal Data Information Program is parent organization of: UC Davis Social Science Data Service is parent organization of: Dryad Digital Repository is parent organization of: Network Data Exchange (NDEx) is parent organization of: Metabolomics Workbench is parent organization of: UCSC Library is parent organization of: Center for Computational Mass Spectrometry is parent organization of: UCSD WIFIRE is parent organization of: UC Davis Library |
Wikidata: Q184478, nlx_79438, Crossref funder ID: 100005595, grid.30389.31, ISNI: 0000 0001 2348 0690 | https://ror.org/00pjdza24 | SCR_011617 | SciCrunch Registry | University of California, University of California System | 2026-11-07 11:57:16 | 1 | ||||||||
|
NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases Resource Report Resource Website 100+ mentions |
NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases (RRID:SCR_012895) | NIDDK | government granting agency | Center with mission to conduct and support medical research and research training and to disseminate science-based information on diabetes and other endocrine and metabolic diseases. The NIDDK supports a wide range of medical research through grants to universities and other medical research institutions across the country. | diabetes, metabolic disease, digestive, kidney, endocrine, medical research |
recommends: Cell Image Library (CIL) recommends: Biological General Repository for Interaction Datasets (BioGRID) recommends: NIDDK Central Repository recommends: Accelerating Medicines Partnership Type 2 Diabetes Knowledge Portal (AMP-T2D) recommends: Metabolomics Workbench recommends: PeptideAtlas recommends: Network Data Exchange (NDEx) recommends: Mouse Genome Informatics (MGI) recommends: Zebrafish Information Network (ZFIN) recommends: FlyBase recommends: Database of Interacting Proteins (DIP) recommends: WormBase recommends: PhysioNet recommends: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) recommends: UniProt recommends: dbSNP recommends: DNA DataBank of Japan (DDBJ) recommends: European Nucleotide Archive (ENA) recommends: dbVar recommends: ClinicalTrials.gov recommends: European Variation Archive (EVA) recommends: MGnify recommends: Analysis, Visualization, and Informatics Lab-space (AnVIL) recommends: GenBank recommends: Gene Expression Omnibus (GEO) recommends: miRBase recommends: Database of Genomic Variants Archive (DGVa) recommends: Crystallography Open Database (COD) recommends: Coherent X-Ray Imaging Data Bank (CXIDB) recommends: Biological Magnetic Resonance Data Bank (BMRB) recommends: Worldwide Protein Data Bank (wwPDB) recommends: EMDataResource.org recommends: NCBI Assembly Archive Viewer recommends: Cambridge Crystallographic Data Centre (CCDC) recommends: Inorganic Crystal Structure Database (ICSD) recommends: Structural Biology Grid recommends: ArrayExpress recommends: GenomeRNAi recommends: NCBI database of Genotypes and Phenotypes (dbGap) recommends: Protein Circular Dichroism Data Bank (PCDDB) recommends: Electron Microscopy Data Bank at PDBe (MSD-EBI) recommends: PDBe - Protein Data Bank in Europe recommends: PubChem BioAssay recommends: Japanese Genotype-phenotype Archive (JGA) recommends: ProteomeXchange recommends: IntAct recommends: European Genome phenome Archive recommends: MetaboLights recommends: PubChem Substance recommends: The Immunology Database and Analysis Portal (ImmPort) recommends: STRENDA recommends: Kinetic Models of Biological Systems (KiMoSys) recommends: FLOWRepository recommends: Mass spectrometry Interactive Virtual Environment (MassIVE) recommends: Global Proteome Machine Database (GPM DB) recommends: Cancer Imaging Archive (TCIA) recommends: German Neuroinformatics Node (G-Node) recommends: 1000 Functional Connectomes Project recommends: ChEMBL recommends: Image Data Resource (IDR) recommends: SICAS Medical Image Repository recommends: ZENODO recommends: Dataverse Network Project recommends: NeuroMorpho.Org recommends: Mendeley Data recommends: NIMH Data Archive recommends: NIH Figshare Archive recommends: FigShare recommends: National Addiction and HIV Data Archive Program (NAHDAP) recommends: Dryad Digital Repository recommends: Open Science Framework recommends: OpenNeuro recommends: SPARC Portal lists: Mutant Mouse Resource and Research Center lists: NIDDK Research Resources is affiliated with: Cystic Fibrosis Research and Translation Centers is affiliated with: Nutrition and Obesity Research Centers is affiliated with: O'Brien Urology Centers is affiliated with: Hematology Centers is affiliated with: Polycystic Kidney Disease Research and Translation Centers is affiliated with: O'Brien Kidney Centers is affiliated with: Diabetes Research Centers is affiliated with: Digestive Disease Centers is affiliated with: Centers for Diabetes Translation Research is affiliated with: Pediatric Centers of Excellence in Nephrology is affiliated with: Focal Segmental Glomerulosclerosis in Children and Young Adults Interventional Study is related to: Bridging Interventional Development Gaps is related to: Polycystic Kidney Disease Research Resource Consortium has parent organization: National Institutes of Health is parent organization of: MTOPS Prostate Samples Analysis Consortium is parent organization of: Symptom Score for Benign Prostatic Hyperplasia is parent organization of: Type 1 Diabetes - Rapid Access to Intervention Development is parent organization of: National Diabetes Education Program is parent organization of: Family Investigation of Nephropathy of Diabetes is parent organization of: Frequent Hemodialysis Network Daily Trial is parent organization of: HemBase is parent organization of: NIDDK- National Institute of Diabetes and Digestive and Kidney Diseases Obesity Resources is parent organization of: dkCOIN is parent organization of: National Kidney Disease Education Program is parent organization of: Network of Minority Health Research Investigators is parent organization of: National Endocrine and Metabolic Diseases Information Service is parent organization of: National Diabetes Information Clearinghouse is parent organization of: National Digestive Diseases Information Clearinghouse is parent organization of: National Hematologic Diseases Information Service is parent organization of: National Kidney and Urologic Diseases Information Clearinghouse is parent organization of: Type 1 Diabetes Preclinical Testing Program is parent organization of: Frequent Hemodialysis Network Nocturnal Trial is parent organization of: Boston Area Community Health Survey is parent organization of: Minimally Invasive Surgical Therapies Treatment Consortium for Benign Prostatic Hyperplasia is parent organization of: Focal Segmental Glomerulosclerosis in Children and Young Adults Interventional Study |
Type 1 diabetes, Type 2 diabetes, Diabetes, Digestive disease, Kidney disease, Endocrine disease, Obesity, Blood disease, Liver disease, Urologic disease | nlx_inv_1005102 | SCR_012895 | SciCrunch Registry | National Institute of Diabetes and Digestive and Kidney Diseases | 2026-11-07 11:57:32 | 156 | |||||||
|
Coordination of Standards in Metabolomics Resource Report Resource Website 10+ mentions |
Coordination of Standards in Metabolomics (RRID:SCR_014662) | COSMOS | data or information resource, narrative resource, standard specification | A group which aims to create open standards for metabolomics data shsaring and analysis. | metabolomics, standard, collaboration, small molecule, consortium | is listed by: Metabolomics Workbench | European Union COSMOS EC312941 | SCR_014662 | SciCrunch Registry | COordination of Standards in MetabOlomicS (COSMOS), COordination of Standards in MetabOlomicS | 2026-11-07 12:00:54 | 13 | ||||||||
|
3Omics Resource Report Resource Website 1+ mentions |
3Omics (RRID:SCR_014678) | software resource, web application | THIS RESOURCE IS NO LONGER IN SERVICE, documented October 19, 2016. A web tool for visualizing and integrating multiple inter- or intra-transcriptomic, proteomic, and metabolomic human data. 3Omics generates inter-omic correlation networks to visualize relationships in data with respect to time or experimental conditions for transcripts, proteins and metabolites. | metabolomics, metabolomics tool, transcriptomics, proteomics, inter-omic, correlation, network, relationship visualization | is listed by: Metabolomics Workbench | PMID:23875761 | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_014678 | SciCrunch Registry | 2026-11-07 12:01:03 | 1 | |||||||||
|
JMP Resource Report Resource Website 100+ mentions |
JMP (RRID:SCR_014242) | data management software, data processing software, data visualization software, software application, software resource | Statistical software that uses dynamic graphics rather than tables or graphs to visualize raw data. More specific versions of JMP are available for statistical analyses, clinical work, and genomics. Features include statistical modeling, data cleanup, automation and scripting, and experimental design. | statistical software, data visualization, data management, graphic data visualization |
is listed by: Metabolomics Workbench is listed by: SoftCite |
Pay for product, Free trial download is available | SCR_014242 | SciCrunch Registry | 2026-11-07 11:58:17 | 207 | ||||||||||
|
MetaboLights Resource Report Resource Website 500+ mentions |
MetaboLights (RRID:SCR_014663) | data or information resource, data repository, database, service resource, storage service resource | A cross-species, cross-technique database for metabolomics experiments, data, and derived information. It includes metabolite structures and their reference spectra, their biological roles, locations and concentrations, and experimental data from metabolic experiments. | metabolomics, database, structure, spectra, experimental data |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: Metabolomics Workbench |
BBSRC BB/L024152/1 | Publicly available, The community can contribute to this resource | r3d100011556 | SCR_014663 | SciCrunch Registry | MetaboLights | 2026-11-07 11:58:03 | 889 | |||||||
|
TeachingDemos Resource Report Resource Website 1+ mentions |
TeachingDemos (RRID:SCR_014689) | data or information resource, online course, portal, training resource | A portal and resource for tutorials on a variety of data analysis techniques, the use of tools such as MetaMapR, workshops on data visualization, and R code manuals. | is listed by: Metabolomics Workbench | Freely available | SCR_014689 | SciCrunch Registry | 2026-11-07 11:58:04 | 7 | |||||||||||
|
Hierarchical Clustering Resource Report Resource Website 1+ mentions |
Hierarchical Clustering (RRID:SCR_014673) | data analysis software, data processing software, software application, software resource, source code | R documentation for hierarchical cluster analysis on a set of dissimilarities for n objects. Each object is assigned to its own cluster, which an algorithm proceeds through iteratively. Two of the most similar clusters are joined at each stage until there is a single cluster. Distances between clusters are recomputed at each stage by the Lance–Williams dissimilarity update formula according to the particular clustering method being used. Clustering methods include: Ward's minimum variance method, complete linkage method, and single linkage method. | statistical analysis, statistical analysis package, r, r package, data analysis, software, cluster, hierarchical, dissimilarity, clustering method, metabolomics | is listed by: Metabolomics Workbench | Acknowledgement requested | SCR_014673 | SciCrunch Registry | R: Hierarchical Clustering, R - Hierarchical Clustering | 2026-11-07 11:58:15 | 4 | |||||||||
|
Principal Components Analysis Resource Report Resource Website 10+ mentions |
Principal Components Analysis (RRID:SCR_014676) | data analysis software, data processing software, software application, software resource, source code | R documentation for a function that performs a principal components analysis on a given data matrix and returns the results as an object of class prcomp. | statistical analysis, statistical analysis package, r, r package, principal component analysis, data matrix, prcomp, metabolomics | is listed by: Metabolomics Workbench | SCR_014676 | SciCrunch Registry | 2026-11-07 11:58:03 | 17 | |||||||||||
|
Linear Discriminant Analysis Resource Report Resource Website |
Linear Discriminant Analysis (RRID:SCR_014675) | data analysis software, data processing software, software application, software resource, source code | R documentation for a function to perform linear discriminant analysis; specifically, to detect if the within-class covariance matrix is singular. | statistical analysis, statistical analysis package, r, r package, linear disciminant analysis, covariance, matrix, linear discriminant analysis, data analysis software, metabolomics | is listed by: Metabolomics Workbench | SCR_014675 | SciCrunch Registry | 2026-11-07 11:57:54 | 0 | |||||||||||
|
DeviumWeb Resource Report Resource Website 10+ mentions |
DeviumWeb (RRID:SCR_014683) | data analysis software, data processing software, data visualization software, software application, software resource, software toolkit | A software suite for data wrangling, creating interactive data visualization, performing statistical analyses, cluster analyses, exploratory data analysis and visualization (such as principal component analysis), predictive modeling and biochemical pathway analysis. | metabolomics, metabolomics tool, data wrangling, creating interactive data visualization, performing statistical analyses, cluster analyses, exploratory data analysis, visualization, principal component analysis, predictive modeling, biochemical pathway analysis | is listed by: Metabolomics Workbench | Subscription required, 30-day demo available | http://dgrapov.github.io/DeviumWeb/ | SCR_014683 | SciCrunch Registry | 2026-11-07 11:58:21 | 12 | |||||||||
|
NIH Metabolomics program Resource Report Resource Website |
NIH Metabolomics program (RRID:SCR_014634) | data or information resource, funding resource, portal | A US national program which supoorts the development of technologies in order to enhance the metabolomics field. It specifically increases the national metabolomics research capacity by supporting five core programs: Training in Metabolomics, Metabolomics Technology Development, Metabolomics Reference Standard Synthesis, Metabolomics Data Sharing and International Collaboration, and Comprehensive Metabolomics Resource Cores. | metabolomics, national program, training, technology, data sharing, collaboration, standard, resource core, portal, funding resource | is listed by: Metabolomics Workbench | Available to the scientific community | SCR_014634 | SciCrunch Registry | National Institutes of Health (NIH) Common Fund Metabolomics, NIH Common Fund Metabolomics program | 2026-11-07 12:01:42 | 0 | |||||||||
|
NIST Mass Spectrometry Data Center Resource Report Resource Website 100+ mentions |
NIST Mass Spectrometry Data Center (RRID:SCR_014680) | data or information resource, organization portal, portal | A data center that develops evaluated mass spectral libraries and provides related software tools that assist compound identification by providing reference mass spectra for GC/MS (by electron ionization) and LC-MS/MS (by tandem mass spectrometry). It also provides gas phase retention indices for GC. Resources include the mass spectral library, the peptide library, and a standard refernece material guide. | metabolomics, metabolomics tool, peptide, mass spectrometry, compound identification, data center, portal | is listed by: Metabolomics Workbench | https://www.nist.gov/mml/biomolecular-measurement/mass-spectrometry-data-center | SCR_014680 | SciCrunch Registry | Mass Spectrometry Data Center, NIST MS Data Center, MS Data Center | 2026-11-07 12:01:43 | 108 | |||||||||
|
re3data.org Resource Report Resource Website 50+ mentions |
re3data.org (RRID:SCR_006782) | re3data.org | data or information resource, database, registry | Global registry of research data repositories from all academic disciplines that allows the easy identification of appropriate research data repositories, both for data producers and users. Information icons display principal attributes of a repository that can be used for multi-faceted searches. Repository operators can suggest their infrastructures to be listed via a simple application form. A repository is indexed when the minimum requirements are met, i.e. mode of access to the data and repository, as well as the terms of use. | vocabulary, registry, metadata standard, data sharing, FASEB list |
lists: Academic Seismic Portal at UTIG lists: National Addiction and HIV Data Archive Program (NAHDAP) lists: Alaska Climate Research Center lists: MINT lists: Internet Archive lists: MatrixDB lists: Animal QTLdb lists: MPIDB lists: BeetleBase lists: Conserved Domain Database lists: NeuroMorpho.Org lists: Marine Geoscience Data System lists: Cell Centered Database lists: dbMHC lists: Human Mortality Database lists: UniProt lists: Ligand-Gated Ion Channel Database lists: EcoGene lists: NCBI Genome lists: ESTHER lists: Genomes Online Database lists: Gramene lists: American FactFinder lists: Human Proteinpedia lists: IMGT/HLA lists: Influenza Virus Resource lists: DOE Joint Genome Institute lists: MetaCrop lists: ISPS Data Archive lists: MorphBank lists: miRBase lists: Inter-university Consortium for Political and Social Research (ICPSR) lists: Mouse Phenome Database (MPD) lists: MorphoBank lists: dbVar lists: Open Science Framework lists: TalkBank lists: Nucleic Acid Database lists: NCBI Taxonomy lists: NCBI Protein Database lists: PHI-base lists: Alberta Geological Survey lists: Protein Clusters lists: Reactome lists: Cell Image Library (CIL) lists: eyeMoviePedia lists: ALLBUS - German General Social Survey lists: TPA lists: Agency for Healthcare Research and Quality lists: Alaska Satellite Facility lists: Current German Weather Stations lists: NCBI Structure lists: BOLD lists: PDBe - Protein Data Bank in Europe lists: FishBase lists: Nucleotide database lists: NCBI BioSystems Database lists: SGD lists: Data.gov lists: RHEA lists: European Bioinformatics Institute lists: NCBI Probe lists: NCBI Nucleotide lists: Database of Genomic Variants Archive (DGVa) lists: NCBI Popset lists: Whole Brain Atlas lists: EMAGE Gene Expression Database lists: Limited Access Datasets From NIMH Clinical Trials lists: Tree of Life Web Project lists: TreeBASE lists: UCSC Genome Browser lists: UniPROBE lists: Crystallography Open Database (COD) lists: National Archive of Computerized Data on Aging (NACDA) lists: EOL - Encyclopedia of Life lists: VectorBase lists: caArray lists: NCBI Epigenomics lists: GWAS Central lists: QTL Archive lists: Proteome Commons lists: XNAT Central lists: 4TU.Datacentrum lists: Amazon Web Services Public Data Sets lists: ChemSpider lists: DataStaR lists: Rat Genome Database (RGD) lists: Atlas of Living Australia lists: Electron Microscopy Data Bank at PDBe (MSD-EBI) lists: Phytozome lists: FlyBase lists: MaizeGDB lists: Tuberculosis Database lists: InterPro lists: UNAVCO lists: The Human Protein Atlas lists: InnateDB lists: UniSTS lists: Launchpad lists: Surveillance Epidemiology and End Results lists: FAOSTAT lists: Adult Blood Lead Epidemiology and Surveillance Interactive Database lists: HIstome: The Histone Infobase lists: HPRD - Human Protein Reference Database lists: Biological General Repository for Interaction Datasets (BioGRID) lists: INFEVERS lists: Reciprocal Net lists: Africa Centre for Health and Population Studies lists: BeeBase lists: Biodiversity Heritage Library lists: Databrary lists: ACADIS Gateway lists: ACEpepDB lists: AIMS Data Centre lists: ALADDIN lists: ASTER lists: Access to Archival Databases lists: AidData lists: Alaska Ocean Observing System lists: J. Craig Venter Institute lists: Wellcome Trust Sanger Institute; Hinxton; United Kingdom lists: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) lists: myExperiment lists: BioModels lists: Addgene lists: Antarctic and Southern Ocean Data Portal lists: OpenTopography lists: National Snow and Ice Data Center lists: Biological Magnetic Resonance Data Bank (BMRB) lists: dbSNP lists: Ensembl lists: DNA DataBank of Japan (DDBJ) lists: Entrez Gene lists: Zebrafish Information Network (ZFIN) lists: GitHub lists: DrugBank lists: NCBI database of Genotypes and Phenotypes (dbGap) lists: Gene Expression Nervous System Atlas lists: SumsDB lists: GenBank lists: GermOnline lists: HGNC lists: Greengenes lists: Neuroscience Information Framework lists: HomoloGene lists: ArrayExpress lists: JASPAR lists: WormBase lists: Database of Interacting Proteins (DIP) lists: EMDataResource.org lists: ResearchCompendia lists: Proteomics Identifications (PRIDE) lists: RefSeq lists: FAIRsharing lists: PubChem lists: FigShare lists: UniGene lists: NIMH Data Archive lists: TAIR lists: NCBI BioProject lists: SMD lists: OpenNeuro lists: SoyBase lists: Beta Cell Biology Consortium lists: Biomedical Informatics Research Network lists: Dryad Digital Repository lists: Atlantic Canada Conservation Data Centre lists: Agri-environmental Research Data Repository lists: Australian Antarctic Data Centre lists: Antibody Registry lists: Mouse Genome Informatics (MGI) lists: European Nucleotide Archive (ENA) lists: NIDDK Central Repository lists: GigaScience lists: PeptideAtlas lists: 1000 Genomes: A Deep Catalog of Human Genetic Variation lists: IntAct lists: fMRI Data Center lists: Gene Expression Omnibus lists: Data and Specimen Hub (NICHD DASH) lists: NIDA Data Share lists: The NINDS Human Cell and Data Repository (NHCDR) lists: Microphysiology Systems Database lists: Dataverse Network Project lists: Mendeley lists: Vivli lists: Metabolomics Workbench lists: Qualitative Data Repository lists: Protocols.io lists: ZENODO lists: STRENDA lists: Code Ocean lists: Brain Image Library lists: German Collection of Microorganisms and Cell Cultures lists: INPTDAT lists: DataONE lists: GBIF - Global Biodiversity Information Facility lists: Lamont-Doherty Core Repository lists: CaltechDATA lists: Synapse lists: Incorporated Research Institutions for Seismology lists: Cancer Imaging Archive (TCIA) lists: Mendeley Data lists: UK Data Archive lists: GigaDB lists: PhysioNet lists: Project Data Sphere lists: Influenza Research Database (IRD) lists: Simtk.org lists: ResearchGate lists: Virus Pathogen Resource (ViPR) lists: Cambridge Structural Data Base lists: 4TU.ResearchData lists: Aperta Turkey Open Archive lists: Polar Data Catalogue lists: Arch lists: Australian Data Archive lists: Australian Ocean Data Network lists: Barbara A. Mikulski Archive for Space Telescopes lists: Aston Data Explorer lists: Birkbeck Research Data lists: B2SHARE Eudat lists: BioHeritage National Science Challenge Data Repository lists: Bolin Centre Database lists: Brown Digital Repository is listed by: FORCE11 is related to: U.S. Census Bureau is related to: Rat Genome Database (RGD) is related to: ResearchCompendia has parent organization: Humboldt University of Berlin; Berlin; Germany has parent organization: Karlsruhe Institute of Technology; Karlsruhe; Germany |
DFG | The community can contribute to this resource | nlx_152589 | SCR_006782 | SciCrunch Registry | Registry of Research Data Repositories, re3data.org: Registry of Research Data Repositories, re3data | 2026-11-07 12:02:45 | 89 | ||||||
|
MetaP Resource Report Resource Website 10+ mentions |
MetaP (RRID:SCR_014686) | computational hosting, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 5,2023. Software tool for processing in metabolomics experiments., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | metabolomics, metabolomics tool, server, data analysis, processing, computational hosting, bio.tools |
is listed by: Metabolomics Workbench is listed by: bio.tools |
DOI:10.1155/2011/839862 | THIS RESOURCE IS NO LONGER IN SERVICE | biotools:metap | https://bio.tools/metap | SCR_014686 | SciCrunch Registry | metap, MetaP Server | 2026-11-07 12:04:45 | 15 | ||||||
|
Birmingham Metabolite Library Resource Report Resource Website 10+ mentions |
Birmingham Metabolite Library (RRID:SCR_014666) | data or information resource, database | A collection of experimental 1D and 2D J-resolved NMR spectra of 208 metabolite standards. | metabolomics, database, metabolite, 1d, 2d, j resolved, nmr, spectra | is listed by: Metabolomics Workbench | DOI:10.1007/s11306-011-0347-7 | Publicly available, Account required | SCR_014666 | SciCrunch Registry | 2026-11-07 12:03:19 | 13 | |||||||||
|
Glycan Mass Spectral Database (GMDB) Resource Report Resource Website |
Glycan Mass Spectral Database (GMDB) (RRID:SCR_014667) | GMDB | data or information resource, database | A multistage tandem mass spectral database using a variety of structurally defined glycans. It provides tools for glycomics research that enable users to identify glycans by spectral matching. The database stores MS2, MS3, and MS4 spectra of N-and O-linked glycans, and glycolipid glycans as well as the partial structures of these glycans. | glycomics, database, metagenomics, glycan, mass, spectral matching, tandem mass spectra | is listed by: Metabolomics Workbench | New Energy and Industrial Technology Development Organization ; Ministry of Education Culture Sports Science and Technology MEXT ; Tsukuba Advanced Computing Center of the National Institute of Advanced Industrial Science and Technology |
SCR_014667 | SciCrunch Registry | Glycan Mass Spectral Database | 2026-11-07 12:03:11 | 0 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the dkNET Resources search. From here you can search through a compilation of resources used by dkNET and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that dkNET has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on dkNET then you can log in from here to get additional features in dkNET such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into dkNET you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
Email: info_at_ dknet.org
