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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Swiss-PdbViewerDeepViewv4.0 Resource Report Resource Website 100+ mentions |
Swiss-PdbViewerDeepViewv4.0 (RRID:SCR_013295) | software resource | First of all, and most importantly, PC and Mac versions have been resynchronized. Support for direct login modelling submissions and result retrieval to/from the SwissModel Workspace Enhanced Import Menu Enhanced user interface with taxonomy support, and new sequence alignment features. New 3D Motif Searching feature Easy access to external user defined scripts directly from the interface Revised Help files accessible from the interface Swiss-PdbViewer (aka DeepView) is an application that provides a user friendly interface allowing to analyze several proteins at the same time. The proteins can be superimposed in order to deduce structural alignments and compare their active sites or any other relevant parts. Amino acid mutations, H-bonds, angles and distances between atoms are easy to obtain thanks to the intuitive graphic and menu interface. Swiss-PdbViewer can also read electron density maps, and provides various tools to build into the density. In addition, various modeling tools are integrated and command files for popular energy minimization packages can be generated. Finally, as a special bonus, POV-Ray scenes can be generated from the current view in order to make stunning ray-traced quality images. |
is related to: SWISS-MODEL has parent organization: SIB Swiss Institute of Bioinformatics |
nif-0000-30439 | SCR_013295 | DeepView | 2026-07-25 12:07:51 | 391 | ||||||||||
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SIB Swiss Institute of Bioinformatics Resource Report Resource Website 10+ mentions |
SIB Swiss Institute of Bioinformatics (RRID:SCR_012816) | SIB | data or information resource, organization portal, training resource, portal | An academic, non-profit foundation recognized of public utility that coordinates research and education in bioinformatics throughout Switzerland and provides high quality bioinformatics services to the national and international research community. * The first and primary SIB mission consists of providing services, i.e. the bioinformatics research infrastructure for life science research. It is carried through in a top-down approach, with objectives set by the SIB Board of Directors and an implementation plan agreed with the concerned groups. Federal funds are almost exclusively used to fulfill this mission. * Within the second mission the SIB plays a federating role, linking the Swiss bioinformatics community and promoting and coordinating research and education. This activity is mainly performed in a bottom-up way with funding from the universities and other partners and from research grants. | bioinformatics, genomics, proteomics, systems biology |
is affiliated with: SourceData is related to: IMEx - The International Molecular Exchange Consortium is related to: AgedBrainSYSBIO is related to: IMIDIA is related to: ProteomeXchange is related to: Open PHACTS is related to: IntAct is related to: ExPASy ABCD database is parent organization of: Computational Cancer Genomics Group is parent organization of: Bgee: dataBase for Gene Expression Evolution is parent organization of: Human Proteomics Initiative is parent organization of: EPDnew is parent organization of: ENZYME is parent organization of: PROSITE is parent organization of: SwissRegulon is parent organization of: CLIPZ is parent organization of: ViralZone is parent organization of: MyHits is parent organization of: HAMAP is parent organization of: neXtProt is parent organization of: ExPASy Bioinformatics Resource Portal is parent organization of: CleanEx is parent organization of: SWISS-MODEL Repository is parent organization of: HTPSELEX is parent organization of: Cellosaurus is parent organization of: UniProt is parent organization of: IntEnz- Integrated relational Enzyme database is parent organization of: SWISS-2DPAGE is parent organization of: UniPathway is parent organization of: swissPIT is parent organization of: ExPASy Biochemical Pathways is parent organization of: ExPASy Aldente Peptide Mass Fingerprinting tool is parent organization of: Swiss-PdbViewerDeepViewv4.0 is parent organization of: UniCarbKB is parent organization of: RHEA is parent organization of: Fastqtl is parent organization of: Progenetix is parent organization of: BayeScan is parent organization of: Eukaryotic Promoter Database is parent organization of: ChIP-seq |
nlx_96822 | SCR_012816 | SIB Swiss Institute of Bioinformatics, Institut Suisse de Bioinformatique | 2026-07-28 09:43:08 | 48 | ||||||||
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SWISS-MODEL Resource Report Resource Website 1000+ mentions |
SWISS-MODEL (RRID:SCR_018123) | service resource, data or information resource, data access protocol, software resource, web service | Software tool as fully automated protein structure homology modeling server, accessible via ExPASy web server, or from program DeepView Swiss Pdb-Viewer. Structural bioinformatics web-server dedicated to homology modeling of 3D protein structures. Used to make protein modelling accessible to all biochemists and molecular biologists. | 3D protein structure, homology modeling server, protein modeling, structural bioinformatics, automated comparative modeling, bio.tools |
is listed by: Debian is listed by: bio.tools is related to: ExPASy Bioinformatics Resource Portal is related to: Swiss-PdbViewerDeepViewv4.0 has parent organization: University of Basel; Basel; Switzerland provides: SWISS-MODEL Repository |
PMID:12824332 | Free, Freely available | biotools:swiss-model_workspace, biotools:swiss_model | https://bio.tools/swiss_model, https://bio.tools/swiss-model_workspace | SCR_018123 | 2026-07-28 09:44:50 | 2796 |
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