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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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Stanford University; Stanford; California Resource Report Resource Website 50+ mentions |
Stanford University; Stanford; California (RRID:SCR_011538) | university | Private, non profit university in Stanford, California, USA for research and undergraduate and graduate studies. Known for its academic strength, wealth, proximity to Silicon Valley, and ranking as one of the world's top universities. Particularly noted for its entrepreneurship and is one of the most successful universities in attracting funding for start-ups. | private, university, institution, undergraduate, program, resource, graduate |
uses: ShareLaTeX uses: ReadCube uses: Scizzle uses: Sparrho uses: GenomeCompiler uses: LabArchives is affiliated with: Integrative Human Microbiome Project is affiliated with: Diabetes Epigenome Atlas is related to: Stanford Research Institute International is related to: Alzheimers Disease Genetics Consortium is related to: Beta Cell Biology Consortium is related to: Clinical and Translational Science Awards Consortium is related to: ShareLaTeX is related to: LabArchives is related to: Diabetic Foot Consortium is related to: GENSCAN is related to: Center for Expanded Data Annotation and Retrieval is parent organization of: MAXCHELATOR is parent organization of: Sea Urchin Embryology is parent organization of: SNPiR is parent organization of: GERP is parent organization of: Wnt homepage is parent organization of: Biozon is parent organization of: VectorDB- Molecular Biology Vector Sequence Database is parent organization of: HighWire Press is parent organization of: BFCounter is parent organization of: Clarity resources is parent organization of: PoissonSeq is parent organization of: Flybrain at Stanford is parent organization of: Stanford Genomics Service Center Core Facility is parent organization of: STRUCTURE is parent organization of: RVD is parent organization of: OpenSim is parent organization of: PharmGKB is parent organization of: JETTA is parent organization of: Phoenix is parent organization of: WEBMAXC STANDARD is parent organization of: Ontology Development and Information Extraction is parent organization of: Stanford Translational Research Integrated Database Environment and Clinical Data Warehouse is parent organization of: Phenotree is parent organization of: Quantitative Enrichment of Sequence Tags is parent organization of: WholeCellKB is parent organization of: Simbios is parent organization of: Neurogrid is parent organization of: T-lex is parent organization of: HighWire is parent organization of: Tissue Microarray Database is parent organization of: Stanford TMA Software is parent organization of: TMA-Combiner is parent organization of: Stanford Center for Biomedical Informatics Research is parent organization of: amide is parent organization of: Wnt Database is parent organization of: OligoGenome is parent organization of: HyBrow (Hypothesis Browser) is parent organization of: DataWrangler is parent organization of: BenchWise is parent organization of: Neurobiological Image Management System is parent organization of: Target genes of Wnt/beta-catenin signaling is parent organization of: HPMR - Human Plasma Membrane Receptome is parent organization of: LPFC: A Library of Protein Family Cores is parent organization of: YDPM - Yeast Deletion Project is parent organization of: SimTKCore is parent organization of: Postdoctoral Program for Veterinarians is parent organization of: Alizadehlab: MeeboChip and HeeboChip Open Source Project is parent organization of: Q-Value Software is parent organization of: LAGAN is parent organization of: xjView: A Viewing Program For SPM is parent organization of: Exon Array Browser is parent organization of: Coursera is parent organization of: iPOP is parent organization of: SSRL Structural Molecular Biology is parent organization of: SpliceMap is parent organization of: MAPP is parent organization of: SAM is parent organization of: Stanford University School of Medicine; California; USA is parent organization of: ProbCons is parent organization of: Genovo is parent organization of: American Parkinson's Disease Association Information and Referral Center is parent organization of: Sequencing of Candida Albicans is parent organization of: Jambalaya is parent organization of: Simbiome is parent organization of: SciTran is parent organization of: Brain RNA-Seq is parent organization of: CytoSPADE is parent organization of: BioPortal is parent organization of: Research Network in Early Experience and Brain Development is parent organization of: STOP is parent organization of: NCBO Annotator is parent organization of: PubSearch is parent organization of: EM3D is parent organization of: Joint Center for Structural Genomics is parent organization of: ToRNADo is parent organization of: SGD is parent organization of: Stanford CNI is parent organization of: Stanford CoreNLP is parent organization of: GenomeSpace is parent organization of: Encode is parent organization of: OpenNeuro is parent organization of: Poldracklab Portal is parent organization of: Diabetes Epigenome Atlas is parent organization of: MrDiffusion is parent organization of: Stanford Center for Reproducible Neuroscience is parent organization of: Stanford Diabetes Research Center Diabetes Genomics Analysis Core is parent organization of: Biostrings is parent organization of: CIBERSORT is parent organization of: Shannon is parent organization of: VORTEX is parent organization of: Optogenetics Resource Center is parent organization of: Brain RNA-Seq is parent organization of: LeafCutter is parent organization of: Stanford University Vincent Coates Foundation Mass Spectrometry Laboratory Core Facility is parent organization of: Stanford University Human Immune Monitoring Center Core Facility is parent organization of: Preseq is parent organization of: CRISPR-ERA is parent organization of: WEBMAXC EXTENDED is parent organization of: Stanford Graduate School of Business Data, Analytics, and Research Computing Core Facility is parent organization of: Stanford University Community of Shared Advanced Research Platforms is parent organization of: Stanford Sarafan Chemistry, Engineering and Medicine for Human Health Knowledge Centers Core Facility is parent organization of: Stanford Sarafan Protein Engineering Knowledge Center Core Facility is parent organization of: Stanford Sarafan Metabolomics Knowledge Center Core Facility is parent organization of: Stanford Nanofabrication Core Facility is parent organization of: Stanford Sarafan Macromolecular Structure Knowledge Center Core Facility is parent organization of: Stanford Sarafan Medicinal Chemistry Knowledge Center Core Facility is parent organization of: Stanford Graduate School of Business Behavioral Lab Core Facility is parent organization of: Stanford Nano Shared Core Facility is parent organization of: Stanford System Prototyping Core Facility is parent organization of: Stanford Graduate School of Business Library is parent organization of: Stanford Vincent V.C. Woo Sandbox Laboratory Core Facility is parent organization of: Stanford Behavioral and Functional Neuroscience Laboratory Core Facility is parent organization of: Stanford Neuroscience Gene Vector and Virus Core Facility is parent organization of: Stanford Visualization Laboratory Core Facility is parent organization of: Stanford Geochronology Cluster Core Facility is parent organization of: Stanford Stable Isotope Biogeochemistry Laboratory Core Facility is parent organization of: Stanford Neuroscience Preclinical Imaging Laboratory Core Facility is parent organization of: Stanford Environmental Measurements Core Facility is parent organization of: Stanford Microchemical Analysis Core Facility is parent organization of: Stanford Neuroscience Microscopy Service Core Facility is parent organization of: Stanford Doerr School of Sustainability Sample Preparation Laboratory Core Facility is parent organization of: Stanford SIGMA Shared Facility is parent organization of: Stanford School of Medicine Translational Applications Service Center Core Facility is parent organization of: Stanford University School of Medicine Beckman Center for Molecular and Genetic Medicine Core Facility is parent organization of: Stanford University Chemistry Department NMR Facility is parent organization of: Stanford University School of Medicine Biobank Core Facility is parent organization of: Stanford University School of Medicine Center for Innovation in In vivo Imaging Core Facility is parent organization of: Stanford University School of Medicine Richard M. Lucas Center for Imaging Core Facility is parent organization of: Stanford University School of Medicine PET/MRI Metabolic Service Center Core Facility is parent organization of: Stanford University School of Medicine In Vitro Biosafety Level3 Service Center Core Facility is parent organization of: Stanford University School of Medicine Human Pathology Histology Services Laboratory Core Facility is parent organization of: Stanford University School of Medicine Genetics Bioinformatics Service Center Core Facility is parent organization of: Stanford Canary Center Preclinical Imaging Core Facility is parent organization of: Stanford University School of Medicine Transgenic, Knockout and Tumor model Center Core Facility is parent organization of: Stanford University School of Medicine Veterinary Service Center Core Facility is parent organization of: Stanford University School of Medicine Cancer Institute Tissue Procurement Shared Resource Core Facility is parent organization of: Stanford University School of Medicine Clinical and Translational Research Unit Core Facility is parent organization of: Stanford University School of Medicine Institute for Stem Cell Biology and Regenerative Medicine FACS Core Facility is parent organization of: Stanford University School of Medicine Animal Diagnostic Laboratory Core Facility is parent organization of: Stanford University Computer Science Department Computer Core Facility is parent organization of: Stanford University Instrumentation Shop Core Facility is parent organization of: Stanford University Cyclotron and Radiochemistry Core Facility is parent organization of: Stanford University Biomaterials and Advanced Drug Delivery Laboratory Core Facility is parent organization of: Stanford University Chemistry Department Optics Core Facility is parent organization of: Stanford University School of Medicine Computational Services and Bioinformatics Core Facility is parent organization of: Stanford University School of Medicine Laboratory for Cell and Gene Medicine Core Facility is parent organization of: Stanford University Research Computing is parent organization of: Stanford University Physics Machine Shop Core Facility is parent organization of: Stanford University High Performance Computing Center Core Facility is parent organization of: Stanford Center for High Throughput Quantitative Biology Core Facility is parent organization of: Stanford University Quantitative Sciences Unit Core Facility is parent organization of: Stanford University School of Medicine Cancer Institute Biostatistics Shared Resource Core Facility is parent organization of: Stanford Spectrum Biostatistics Epidemiology and Research Design Core Facility is parent organization of: STRUCTURE is parent organization of: Stanford University Additive Manufacturing and Printing Core Facility is parent organization of: Stanford University Koret Human Neurosciences Community Laboratory Core Facility is parent organization of: Stanford University Microfluidics Foundry Core Facility is parent organization of: Stanford University School of Medicine Protein and Nucleic Acid Core Facility is parent organization of: WebProtege is parent organization of: Stanford Cryo-Electron Microscopy Center Core Facility is parent organization of: Stanford Geomicrobiology Shared Laboratories Core Facility is parent organization of: Stanford University Cosmogenic Isotope Lab Core Facility is parent organization of: Stanford Research Computing Core Facility is parent organization of: Stanford University Mineralogy and Petrology Lab Core Facility is parent organization of: Stanford University MicroCT Core Facility is parent organization of: Stanford Ecosystems Shared Laboratory Core Facility is parent organization of: DADA2 is parent organization of: OpenMM is parent organization of: Stanford CVI Biobank is parent organization of: Stanford University Nucleus at Sarafan ChEM-H Chemoproteomics Group Core Facility has organization facet: MARIA |
nlx_44253, grid.168010.e, Wikidata:Q41506, Crossref funder ID:100005492, ISNI:419368956 | https://ror.org/00f54p054 | SCR_011538 | SciCrunch Registry | 2026-10-31 12:15:25 | 70 | |||||||||
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Stanford Research Institute International Resource Report Resource Website 1+ mentions |
Stanford Research Institute International (RRID:SCR_004926) | SRI | institution | Independent, nonprofit research institute conducting client sponsored research and development for government agencies, commercial businesses, foundations, and other organizations. SRI also brings its innovations to the marketplace by licensing its intellectual property and creating new ventures. SRI was founded as Stanford Research Institute in 1946 by a group of West Coast industrialists and Stanford University. SRI formally separated from the University in 1970, and we changed our name to SRI International in 1977. |
is related to: Stanford University; Stanford; California is parent organization of: BioCyc is parent organization of: NIMH Toxicological Screens of Novel Ligands is parent organization of: Project Halo is parent organization of: EcoCyc is parent organization of: NCANDA: Data Integration Component is parent organization of: SRI24 Atlas: Normal Adult Brain Anatomy is parent organization of: HumanCyc: Encyclopedia of Homo sapiens Genes and Metabolism is parent organization of: MetaCyc |
nif-0000-00235 | SCR_004926 | SciCrunch Registry | SRI International, Stanford Research Institute | 2026-10-31 12:13:53 | 3 | |||||||||
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Center for Expanded Data Annotation and Retrieval Resource Report Resource Website 1+ mentions |
Center for Expanded Data Annotation and Retrieval (RRID:SCR_016269) | CEDAR | controlled vocabulary, data or information resource, ontology, organization portal, portal | Develops information technologies that make authoring complete metadata more manageable. Its products aim to facilitate using the metadata in further research.Center to improve metadata and its use throughout biomedical sciences. Develops information technologies that make authoring complete metadata more manageable through better interfaces, terminology, metadata practices, and analytics. Optimizes metadata pathway from provider to end user. Provides way for funders to specify what metadata they want to collect as part of research life cycle. | Metadata, interface, metadata practice, analytics, metadata pathway, funded research, data repository, data collection, |
is related to: Stanford University; Stanford; California is related to: Yale University; Connecticut; USA is related to: University of Oxford; Oxford; United Kingdom has parent organization: Stanford Center for Biomedical Informatics Research is parent organization of: CEDAR Workbench |
NIAID U54 AI117925 | SCR_018150 | https://more.metadatacenter.org/ | SCR_016269 | SciCrunch Registry | 2026-10-31 12:16:43 | 4 | |||||||
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Beta Cell Biology Consortium Resource Report Resource Website 50+ mentions |
Beta Cell Biology Consortium (RRID:SCR_005136) | BCBC | biomaterial supply resource, cell repository, material resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented May 10, 2017. A pilot effort that has developed a centralized, web-based biospecimen locator that presents biospecimens collected and stored at participating Arizona hospitals and biospecimen banks, which are available for acquisition and use by researchers. Researchers may use this site to browse, search and request biospecimens to use in qualified studies. The development of the ABL was guided by the Arizona Biospecimen Consortium (ABC), a consortium of hospitals and medical centers in the Phoenix area, and is now being piloted by this Consortium under the direction of ABRC. You may browse by type (cells, fluid, molecular, tissue) or disease. Common data elements decided by the ABC Standards Committee, based on data elements on the National Cancer Institute''s (NCI''s) Common Biorepository Model (CBM), are displayed. These describe the minimum set of data elements that the NCI determined were most important for a researcher to see about a biospecimen. The ABL currently does not display information on whether or not clinical data is available to accompany the biospecimens. However, a requester has the ability to solicit clinical data in the request. Once a request is approved, the biospecimen provider will contact the requester to discuss the request (and the requester''s questions) before finalizing the invoice and shipment. The ABL is available to the public to browse. In order to request biospecimens from the ABL, the researcher will be required to submit the requested required information. Upon submission of the information, shipment of the requested biospecimen(s) will be dependent on the scientific and institutional review approval. Account required. Registration is open to everyone., documented on August 1, 2015. Consortium that aims to facilitate interdisciplinary collaborations to advance the understanding of pancreatic islet development and function, with the goal of developing innovative therapies to correct the loss of beta cell mass in diabetes, including cell reprogramming, regeneration and replacement. They are responsible for collaboratively generating the necessary reagents, mouse strains, antibodies, assays, protocols, technologies and validation assays that are beyond the scope of any single research effort. The scientific goals for the BCBC are to: * Use cues from pancreatic development to directly differentiate pancreatic beta cells and islets from stem / progenitor cells for use in cell-replacement therapies for diabetes, * Determine how to stimulate beta cell regeneration in the adult pancreas as a basis for improving beta cell mass in diabetic patients, * Determine how to reprogram progenitor / adult cells into pancreatic beta-cells both in-vitro and in-vivo as a mean for developing cell-replacement therapies for diabetes, and * Investigate the progression of human type-1 diabetes using patient-derived cells and tissues transplanted in humanized mouse models. Many of the BCBC investigator-initiated projects involve reagent-generating activities that will benefit the larger scientific community. The combination of programs and activities should accelerate the pace of major new discoveries and progress within the field of beta cell biology. | RIN, Resource Information Network, pancreatic islet, mouse, beta cell, pancreas, pancreatic development, embryonic stem cell, cell line, genomics, antibody, adenovirus, functional genomics, mouse embryonic stem cell line, mouse strain, protocol, embryonic stem cell line, data sharing, data set, gene expression, gene, pancreatic islet development, pancreatic islet function, basic science, basic research, cell reprogramming, cell regeneration, cell replacement, RRID Community Authority |
is used by: NIF Data Federation is used by: Integrated Animals is used by: NIDDK Information Network (dkNET) is listed by: One Mind Biospecimen Bank Listing is listed by: re3data.org is listed by: Consortia-pedia is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Research Resources is listed by: Resource Information Network is related to: dkCOIN is related to: Karolinska Institute; Stockholm; Sweden is related to: University of California at Los Angeles; California; USA is related to: Stanford University; Stanford; California is related to: University of Massachusetts Medical School; Massachusetts; USA is related to: Hebrew University Hadassah Medical School; Jerusalem; Israel is related to: Philipps-University Marburg; Marburg; Germany is related to: Imperial College London; London; United Kingdom is related to: Childrens Hospital of Philadelphia - Research Institute; Pennsylvania; USA is related to: Icahn School of Medicine at Mount Sinai; New York; USA is related to: University of California at San Francisco; California; USA is related to: Massachusetts Institute of Technology; Massachusetts; USA; is related to: Hadassah Medical Center; Jerusalem; Israel is related to: DanStem is related to: Oregon Health and Science University; Oregon; USA is related to: Vanderbilt University; Tennessee; USA is related to: University of Chicago; Illinois; USA is related to: University of Massachusetts; Massachusetts; USA is related to: University of Colorado Boulder; Colorado; USA is related to: Vrije Universiteit Brussel; Brussels; Belgium is related to: University of Geneva; Geneva; Switzerland is related to: University of Pennsylvania Perelman School of Medicine; Pennsylvania; USA is related to: McEwen Centre for Regenerative Medicine is related to: Seattle Childrens Research Institute; Washington; USA is related to: Columbia University; New York; USA is related to: University of Texas Southwestern Medical Center; Texas; USA is related to: Hagedorn Research Institute; Gentofte; Denmark is related to: Howard Hughes Medical Institute is related to: Northwestern University; Illinois; USA is related to: CAMRD is related to: French National Center for Scientific Research is related to: University of California at San Diego; California; USA is related to: University of Pittsburgh; Pennsylvania; USA is related to: University of Copenhagen; Copenhagen; Denmark is related to: Jackson Laboratory is related to: Max Planck Institute for Heart and Lung Research; Bad Nauheim; Germany is related to: Indiana University; Indiana; USA is related to: University of Toronto; Ontario; Canada is related to: Harvard University; Cambridge; United States is related to: Harvard Medical School; Massachusetts; USA is related to: Integrated Manually Extracted Annotation has parent organization: Vanderbilt University; Tennessee; USA is parent organization of: Beta Cell Genomics Ontology |
Type 1 diabetes, Diabetes | NIDDK DK-01-014; NIDDK DK-01-17; NIDDK DK-01-18; NIDDK DK-09-011 |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_144143 | SCR_005136 | SciCrunch Registry | 2026-10-31 12:19:10 | 60 | ||||||
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Diabetic Foot Consortium Resource Report Resource Website |
Diabetic Foot Consortium (RRID:SCR_018914) | DFC | consortium, data or information resource, disease-related portal, organization portal, portal, topical portal | Group of academic institutions committed to studying diabetic foot conditions, such as foot ulcers and wound healing, to develop predictive biomarkers which can be later used to create better treatment plans and improve health and quality of life for people living with diabetes. | Academic institution group, diabetic, diabetic foot, diabetic foot condition, foot ulcer, wound healing, biomarker |
is related to: Indiana University; Indiana; USA is related to: University of Pittsburgh; Pennsylvania; USA is related to: University of Miami; Florida; USA is related to: University of California at San Francisco; California; USA is related to: Stanford University; Stanford; California is related to: University of Michigan; Ann Arbor; USA |
diabetic | NIDDK | SCR_018914 | SciCrunch Registry | 2026-10-31 12:17:10 | 0 | ||||||||
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Clinical and Translational Science Awards Consortium Resource Report Resource Website 1+ mentions |
Clinical and Translational Science Awards Consortium (RRID:SCR_008339) | CTSA | knowledge environment | National consortium of medical research institutions working together to transform the local, regional, and national environment to increase the efficiency and speed of clinical and translational research across the country. Consortium members share a common vision to reduce the time it takes for laboratory discoveries to become treatments for patients, to engage communities in clinical research efforts and to train clinical and translational researchers. This consortium includes 60 medical research institutions located throughout the nation, linking them together to energize the discipline of clinical and translational science. The CTSA consortium has five Strategic Goals: * National Clinical and Translational Research Capability * The Training and Career Development of Clinical and Translational Scientists * Consortium-Wide Collaborations * The Health of our Communities and the Nation * T1 Translational Research | biomedical, clinical, community, consortium, institution, laboratory, medical, patient, research, researcher, science, translational, translational research, treatment |
is related to: REDCap is related to: eBIRT is related to: VIVO is related to: CTSA ShareCenter is related to: CUSP is related to: CDART is related to: cTAKES is related to: CTSA-IP is related to: FURTHeR is related to: HUBzero is related to: ePRISM is related to: ResearchMatch is related to: SPARC Request is related to: Albert Einstein College of Medicine; New York; USA is related to: Clinical Research Resource HUB is related to: Eagle I is related to: CTSAconnect is related to: Boston University; Massachusetts; USA is related to: Case Western Reserve University; Ohio; USA is related to: Columbia University; New York; USA is related to: Duke University; North Carolina; USA is related to: Emory University; Georgia; USA is related to: Morehouse School of Medicine; Georgia; USA is related to: Georgia Institute of Technology; Georgia; USA is related to: Georgetown University; Washington D.C.; USA is related to: Howard University; Washington D.C. is related to: Indiana University School of Medicine; Indiana; USA is related to: Johns Hopkins University; Maryland; USA is related to: Mayo Clinic is related to: Medical College of Wisconsin; Wisconsin; USA is related to: Medical University of South Carolina; South Carolina; USA is related to: Icahn School of Medicine at Mount Sinai; New York; USA is related to: New York University School of Medicine; New York; USA is related to: Northwestern University; Illinois; USA is related to: Oregon Health and Science University; Oregon; USA is related to: Penn State Milton S. Hershey Medical Center; Pennsylvania; USA is related to: Stanford University; Stanford; California is related to: Ohio State University; Ohio; USA is related to: Rockefeller University; New York; USA is related to: Scripps Research Institute is related to: University of Alabama at Birmingham; Alabama; USA is related to: University of North Carolina at Chapel Hill; North Carolina; USA is related to: University of Texas Health Science Center at San Antonio; Texas; USA is related to: University of Utah; Utah; USA is related to: Tufts University; Massachusetts; USA is related to: University of Arkansas for Medical Sciences; Arkansas; USA is related to: University of California at Los Angeles; California; USA is related to: University of California at Davis; California; USA is related to: University of California at Irvine; California; USA is related to: University of California at San Diego; California; USA is related to: University of California at San Francisco; California; USA is related to: University of Chicago; Illinois; USA is related to: University of Cincinnati; Ohio; USA is related to: University of Colorado Denver; Colorado; USA is related to: University of Florida; Florida; USA is related to: University of Illinois at Chicago; Illinois; USA is related to: University of Iowa; Iowa; USA is related to: University of Kansas Medical Center; Kansas; USA is related to: University of Massachusetts Medical School; Massachusetts; USA is related to: University of Miami; Florida; USA is related to: University of Michigan; Ann Arbor; USA is related to: University of Minnesota Twin Cities; Minnesota; USA is related to: University of New Mexico; New Mexico; USA is related to: University of Pennsylvania; Philadelphia; USA is related to: University of Pittsburgh; Pennsylvania; USA is related to: University of Rochester School of Medicine and Dentistry; New York; USA is related to: University of Southern California; Los Angeles; USA is related to: University of Texas Health Science Center at Houston; Texas; USA is related to: University of Texas Medical Branch at Galveston is related to: University of Texas Southwestern Medical Center; Texas; USA is related to: University of Washington; Seattle; USA is related to: University of Wisconsin-Madison; Wisconsin; USA is related to: Vanderbilt University; Tennessee; USA is related to: Meharry Medical College is related to: Virginia Commonwealth University; Virginia; USA is related to: Washington University in St. Louis; Missouri; USA is related to: Weill Cornell Medical College; New York; USA is related to: Hunter College; New York; USA is related to: Yale University; Connecticut; USA has parent organization: Vanderbilt University; Tennessee; USA has parent organization: U.S. Department of Health and Human Services |
National Center for Advancing Translational Sciences 2U54TR000123 | nif-0000-24968 | http://www.ctsaweb.org/ | SCR_008339 | SciCrunch Registry | Clinical & Translational Science Awards, Clinical and Translational Science Awards | 2026-10-31 12:14:46 | 6 | ||||||
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Alzheimers Disease Genetics Consortium Resource Report Resource Website 10+ mentions |
Alzheimers Disease Genetics Consortium (RRID:SCR_004004) | ADGC | consortium, data or information resource, data set, organization portal, portal | Consortium to conduct genome-wide association studies (GWAS) to identify genes associated with an increased risk of developing late-onset Alzheimer''''s disease (LOAD). The goal of the ADGC is to identify genetic variants associated with risk for AD. It plans to do this through the following collaborative goals: # Identify genes responsible for AD susceptibility # Identify AD sub-phenotype genes rate-of-progression plaque / tangle load / distribution biomarker variability # Generate a genetic data resource for the AD research community Data generated by ADGC is available at the following website: https://www.niagads.org/content/alzheimers-disease-genetics-consortium-adgc-collection | genome-wide association study, gene, biomarker, basic science, genetic variant, genetics, african-american, caucasian |
is listed by: Consortia-pedia is related to: University of Pennsylvania Perelman School of Medicine; Pennsylvania; USA is related to: Icahn School of Medicine at Mount Sinai; New York; USA is related to: University of Washington; Seattle; USA is related to: Boston University; Massachusetts; USA is related to: Washington University in St. Louis; Missouri; USA is related to: Vanderbilt University; Tennessee; USA is related to: Oregon Health and Science University; Oregon; USA is related to: Columbia University; New York; USA is related to: University of Miami; Florida; USA is related to: Banner Alzheimer's Institute; Arizona; USA is related to: Indiana University; Indiana; USA is related to: University of Toronto; Ontario; Canada is related to: Mayo Clinic Florida; Florida; USA is related to: Johns Hopkins University; Maryland; USA is related to: Albert Einstein College of Medicine; New York; USA is related to: Genentech is related to: University of Gothenburg; Gothenburg; Sweden is related to: University of North Texas; Texas; USA is related to: University of Kentucky; Kentucky; USA is related to: University of Chicago; Illinois; USA is related to: University of Michigan; Ann Arbor; USA is related to: University of Virginia; Virginia; USA is related to: Florida Alzheimer's Disease Research Center is related to: Mayo Clinic is related to: Emory University; Georgia; USA is related to: New York University; New York; USA is related to: Stanford University; Stanford; California is related to: Northwestern University Feinberg School of Medicine; Illinois; USA is related to: University of Alabama; Alabama; USA is related to: University of Arkansas for Medical Sciences; Arkansas; USA is related to: University of San Diego; California; USA is related to: University of California at Irvine; California; USA is related to: University of California at Los Angeles; California; USA is related to: University of California at San Diego; California; USA is related to: University of California at San Francisco; California; USA is related to: University of Pittsburgh; Pennsylvania; USA is related to: University of Southern California; Los Angeles; USA is related to: University of Texas Southwestern Medical Center; Texas; USA is related to: National Alzheimer's Coordinating Center is related to: Childrens Hospital of Philadelphia - Research Institute; Pennsylvania; USA is related to: National Institute on Aging is related to: University of California at Davis; California; USA is related to: Mayo Clinic College of Medicine is related to: Wake Forest University; North Carolina; USA is related to: National Cell Repository for Alzheimer's Disease is related to: International Genomics of Alzheimers Project is related to: National Alzheimer's Coordinating Center has parent organization: University of Pennsylvania Perelman School of Medicine; Pennsylvania; USA |
NIA UO1AG032984 | nlx_158415 | SCR_004004 | SciCrunch Registry | Alzheimer''''s Disease Genetics Consortium (ADGC), Alzheimer''''s Disease Genetics Consortium | 2026-10-31 12:13:39 | 12 | |||||||
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ShareLaTeX Resource Report Resource Website 1+ mentions |
ShareLaTeX (RRID:SCR_002652) | ShareLaTeX | authoring tool, software application, software resource | An collaborative tool which allows users to edit LaTeX documents in their browser. Multiple users can simultaneously access and edit the same LaTeX document and see the changes in real time. The latest version is available online, and the built in chat helps communicate with others while editing. | collaboration tool, authoring, LaTex |
is used by: University of Toronto; Ontario; Canada is used by: Stanford University; Stanford; California is used by: Harvard University; Cambridge; United States is used by: University of Tokyo; Tokyo; Japan is used by: University of Liverpool; Liverpool; United Kingdom is used by: University of Cambridge; Cambridge; United Kingdom is used by: Imperial College London; London; United Kingdom is used by: Yale University; Connecticut; USA is used by: University of Oxford; Oxford; United Kingdom is used by: Massachusetts Institute of Technology; Massachusetts; USA; is listed by: FORCE11 is related to: FORCE11 is related to: University of Toronto; Ontario; Canada is related to: Stanford University; Stanford; California is related to: Harvard University; Cambridge; United States is related to: University of Tokyo; Tokyo; Japan is related to: University of Liverpool; Liverpool; United Kingdom is related to: University of Cambridge; Cambridge; United Kingdom is related to: Imperial College London; London; United Kingdom is related to: Yale University; Connecticut; USA is related to: University of Oxford; Oxford; United Kingdom is related to: Massachusetts Institute of Technology; Massachusetts; USA; |
Free, Available for download, Freely available | nlx_156080 | SCR_002652 | SciCrunch Registry | 2026-10-31 12:13:10 | 1 | ||||||||
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GENSCAN Resource Report Resource Website 500+ mentions |
GENSCAN (RRID:SCR_013362) | genscan | analysis service resource, data analysis service, production service resource, service resource | Web server for identification of complete gene structures in genomic DNA.Tool for predicting locations and exon-intron structures of genes in genomic sequences from variety of organisms. Used for prediction of complete gene structures in human genomic DNA. | complete gene structures identyfication, genomic DNA, predicting locations, exon-intron structures, genomic sequences, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools is related to: Stanford University; Stanford; California has parent organization: Massachusetts Institute of Technology; Massachusetts; USA; |
PMID:9149143 | Restricted | biotools:genscan, OMICS_01494 | https://bio.tools/genscan | SCR_013362 | SciCrunch Registry | GENSCAN Web Server at MIT | 2026-10-31 12:20:50 | 772 | |||||
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LabArchives Resource Report Resource Website 50+ mentions |
LabArchives (RRID:SCR_013973) | electronic laboratory notebook, software application, software resource | An ELN (electronic lab notebook) software application where researchers can record and organize their data in lieu of a paper notebook. Users can store and edit texts, PDFs, spreadsheets, images, sample collections, and other types of data. LabArchives automatically backs up data and data can be accessed anywhere. Users can choose to use the professional edition of LabArhives, the classroom edition, or to purchase an enterprise license. | ELN, electronic laboratory notebook, software application, data management, lab management, professional, classroom, enterprise |
is used by: University of Sydney; Sydney; Australia is used by: Monash University; Melbourne; Australia is used by: University of Wisconsin-Madison; Wisconsin; USA is used by: Tufts University; Massachusetts; USA is used by: Northwestern University; Illinois; USA is used by: Emory University; Georgia; USA is used by: Stanford University; Stanford; California is used by: University of Oxford; Oxford; United Kingdom is listed by: Connected Researchers is related to: Connected Researchers is related to: University of Sydney; Sydney; Australia is related to: Monash University; Melbourne; Australia is related to: University of Wisconsin-Madison; Wisconsin; USA is related to: Tufts University; Massachusetts; USA is related to: Northwestern University; Illinois; USA is related to: Emory University; Georgia; USA is related to: Stanford University; Stanford; California is related to: University of Oxford; Oxford; United Kingdom |
Available to the research and education community | SCR_013973 | SciCrunch Registry | 2026-10-31 12:20:52 | 64 | ||||||||||
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Clarity resources Resource Report Resource Website 10+ mentions |
Clarity resources (RRID:SCR_001387) | CLARITY Resources | data or information resource, experimental protocol, narrative resource, training resource, video resource | Protocols and other training materials related to the CLARITY protocol, a technique for the transformation of intact tissue into a nanoporous hydrogel-hybridized form (crosslinked to a three-dimensional network of hydrophilic polymers) that is fully assembled but optically transparent and macromolecule-permeable. | workshop, protocol, specimen preparation, transparent brain, glass brain, brain, neuroimaging, phenotyping, tissue, brain tissue, cortex, hippocampus, thalamus, ventral, brainstem |
is used by: NIF Data Federation is used by: Integrated Videos has parent organization: Stanford University; Stanford; California |
NIMH 4R01MH099647-05 | PMID:23575631 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152559 | SCR_001387 | SciCrunch Registry | Clarity resource | 2026-10-31 12:12:50 | 18 | |||||
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Flybrain at Stanford Resource Report Resource Website 1+ mentions |
Flybrain at Stanford (RRID:SCR_001877) | Flybrain(at)Stanford, FlybrainatStanford | data or information resource, data processing software, image analysis software, image collection, software application, software resource | Project content including raw image data, neuronal tracings, image registration tools and analysis scripts covering three manuscripts: Comprehensive Maps of DrosophilaHigher Olfactory Centres : Spatially Segregated Fruit and Pheromone Representation which uses single cell labeling and image registration to describe the organization of the higher olfactory centers of Drosophila; Diversity and wiring variability of olfactory local interneurons in the Drosophila antennal lobe which uses single cell labeling to describe the organization of the antennal lobe local interneurons; and Sexual Dimorphism in the Fly Brain which uses clonal analysis and image registration to identify a large number of sex differences in the brain and VNC of Drosophila. Data * Raw Data of Reference Brain (pic, amira) (both seed and average) * Label field of LH and MB calyx and surfaces for these structures * Label field of neuropil of Reference Brain * Traces (before and after registration). Neurolucida, SWC and AmiraMesh lineset. * MB and LH Density Data for different classes of neuron. In R format and as separate amira files. * Registration files for all brains used in the study * MBLH confocal images for all brains actually used in the study (Biorad pic format) * Sample confocal images for antennal lobe of every PN class * Confocal stacks of GABA stained ventral PNs Programs * ImageJ plugins (Biorad reader /writer/Amira reader/writer/IGS raw Reader) * Binary of registration, warp and gregxform (macosx only, others on request) * Simple GUI for registration tools (macosx only at present) * R analysis/visualization functions * Amira Script to show examples of neuronal classes The website is a collaboration between the labs of Greg Jefferis and Liqun Luo and has been built by Chris Potter and Greg Jefferis. The core Image Registration tools were created by Torsten Rohlfing and Calvin Maurer. | brain, cell, neuron, neuropil, olfactory, pheromone, confocal image, antennal lobe, axon trace, forum, neuronal tracing, image registration tool, analysis script, single-cell labeling, image registration, mushroom body, lateral horn, olfactory receptor neuron | has parent organization: Stanford University; Stanford; California | Wellcome Trust WT076726; Damon Runyon Cancer Research Foundation DRG-1766-03; NIAAA AA05965; NIAAA AA13521; NIDCD R01-DC005982 |
PMID:17382886 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10437 | SCR_001877 | SciCrunch Registry | Flybrain (at) Stanford - A warped brain is a good thing, Flybrain (at) Stanford | 2026-10-31 12:12:58 | 6 | |||||
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GERP Resource Report Resource Website 50+ mentions |
GERP (RRID:SCR_000563) | GERP | software resource | Software that identifies constrained elements in multiple alignments by quantifying substitution deficits. These deficits represent substitutions that would have occurred if the element were neutral DNA, but did not occur because the element has been under functional constraint. We refer to these deficits as Rejected Substitutions. Rejected substitutions are a natural measure of constraint that reflects the strength of past purifying selection on the element. GERP estimates constraint for each alignment column; elements are identified as excess aggregations of constrained columns. A false-positive rate (which is user-settable) is calculated using "shuffled" alignments in which the order of columns is randomized., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | genomic, evolution, rate profiling |
is listed by: OMICtools is listed by: Debian has parent organization: Stanford University; Stanford; California |
PMID:15965027 PMID:21152010 |
THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00174 | https://sources.debian.org/src/gerp++/ | SCR_000563 | SciCrunch Registry | Genomic Evolutionary Rate Profiling, GERP++, Genomic Evolutionary Rate Profiling: GERP, GERP2 | 2026-10-31 12:12:40 | 54 | |||||
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Sea Urchin Embryology Resource Report Resource Website |
Sea Urchin Embryology (RRID:SCR_000460) | Sea Urchin Embryology | data or information resource, narrative resource, training material, training resource | Laboratory modules designed for high school students covering sea urchin embryology including fertilization and development. | gamete, fertilization, development, experiment, sperm, high school | has parent organization: Stanford University; Stanford; California | NSF | nlx_156868 | SCR_000460 | SciCrunch Registry | 2026-10-31 12:12:38 | 0 | ||||||||
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EM3D Resource Report Resource Website 10+ mentions |
EM3D (RRID:SCR_007362) | data processing software, data visualization software, software application, software resource | EM3D is a software application designed to facilitate the analysis and visualization of electron microscope (EM) tomography data by cellular and molecular biologists. Such data are collected as a tilt series, a sequence of 2D electron micrographs taken at many tilt angles with respect to the electron beam. EM3D features an integrated graphical user interface that automates most of the initial alignment and reconstruction of the tilt-series data to form a 3D volume. These functions seamlessly connect with segmentation and model-generation tools that permit the user to easily and reliably extract specific structural components from the reconstructed volume. The 3D models can then be visualized and manipulated using an extensive package of surface- and volume-rendering techniques. EM3D also provides a set of analysis tools to quantify structural information from the models, including their moments, proximity relationships, and spatial reliability. Altogether, EM3D facilitates the analysis of 3D cell structure at the full resolution of a reconstructed volume (2-3 nm)., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. |
has parent organization: Stanford University; Stanford; California has parent organization: Texas A and M University; Texas; USA |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00294 | SCR_007362 | SciCrunch Registry | EM3D | 2026-10-31 12:14:36 | 16 | |||||||||
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Joint Center for Structural Genomics Resource Report Resource Website 50+ mentions |
Joint Center for Structural Genomics (RRID:SCR_008251) | JCSG | institution | The JCSG is a multi-institutional consortium that aims to explore the expanding protein universe to find new challenges and opportunities to significantly contribute to new biology, chemistry and medicine through development of HT approaches to structural genomics. The mission of JCSG is to to operate a robust HT protein structure determination pipeline as a large-scale production center for PSI-2. A major goal is to ensure that innovative high-throughput approaches are developed that advance not only structural genomics, but also structural biology in general, via investigation of large numbers of high-value structures that populate protein fold and family space and by increasing the efficiency of structure determination at substantially reduced cost. The JCSG centralizes each core activity into single dedicated sites, each handling distinct, but interconnected objectives. This unique approach allows each specialized group to focus on its own area of expertise and provides well-defined interfaces among the groups. In addition, this approach addresses the requirements for the scalability needed to process large numbers of targets at a greatly reduced cost per target. JCSG production groups are: - Administrative Core - Bioinformatics Core - Crystallomics Core - Structure Determination Core - NMR Core JCSG is deeply committed to the development of new technologies that facilitate high throughput structural genomics. The areas of development include hardware, software, new experimental methods, and adaptation of existing technologies to advance genome research. In the hardware arena, their commitment is to the development of technologies that accelerate structure solution by increasing throughput rates at every stage of the production pipeline. Therefore, one major area of hardware development has been the implementation of robotics. In the software arena, they have developed enterprise resource software that track success, failures, and sample histories from target selection to PDB deposition, annotation and target management tools, and helper applications aimed at facilitating and automating multiple steps in the pipeline. Sponsors: The Joint Center for Structural Genomics is funded by the National Institute of General Medical Sciences (NIGMS), as part of the second phase of the Protein Structure Initiative (PSI) of the National Institutes of Health (U54 GM074898). | exclusion chromatography, expression, fine-structure spectroscopy, fold, absorption, affinity, bacterial, baculovirus, bioinformatics, biology, biophysical, cell, chemistry, cloning, crystallization, crystallomics, differential scanning calorimetry, diffraction, domain, genomic, gnfuge, growth, hardware, ief gel electrophoresis, macromoleuclar, medicine, microexpression, mouse, nmr, optical density, physicochemical, protein, purification, recombinatorial, robotics, sds-page, sequence, software, structural, structural biology, structure, technology, thermocycler, topoisomerase, tryptic mass spectrometry, uv/vis absorbance scan, x-ray |
has parent organization: University of California at San Diego; California; USA has parent organization: Scripps Research Institute has parent organization: Sanford Burnham Prebys Medical Discovery Institute has parent organization: Stanford University; Stanford; California |
nif-0000-22295, grid.419677.a | https://ror.org/00exr1241 | SCR_008251 | SciCrunch Registry | JCSG | 2026-10-31 12:14:56 | 99 | |||||||
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Research Network in Early Experience and Brain Development Resource Report Resource Website 10+ mentions |
Research Network in Early Experience and Brain Development (RRID:SCR_003271) | Research Network on Early Experience and Brain Development | data or information resource, image collection, portal, topical portal | Portal on how the experiences of early childhood are incorporated into the structures of the developing brain, and how, in turn, those changes in the structures of the brain influence behavior. The network explores how knowledge of brain development can guide us in understanding of behavioral development and vice versa. It focuses specifically on sensitive periods and neural plasticity, the reciprocal phenomena whereby (a) the brain is negatively affected if certain experiences fail to occur within a certain time period, and (b) the brain is altered by experience at virtually any point in the life span. Here we consider not only how the structure of experience is incorporated into the structure of the brain, but also how this knowledge can influence the decisions we make about intervening in the lives of children. Research and other projects conducted by the Network fall into four broad categories: * Effects of early experience on brain development * New methods for studying brain-behavior relations * Comparative studies of early brain-behavioral development * Impact on public policy: Educating educators and the media RESOURCES NimStim Face Stimulus Set The Research Network on Early Experience and Brain Development has developed a battery of 646 facial expression stimuli for use in its own and other studies of face and emotion recognition. Images include the following expressions, displayed by a variety of models of various genders and races: fearful, happy, sad, angry, surprised, calm, neutral, disgusted. They are making these stimuli available to the public free of charge with registration and acceptance of the terms and conditions to use the stimulus set. | brain, development, developing brain, behavior, early experience, brain development, facial expression stimuli, emotion, stimuli, facial expression, young human, child |
has parent organization: University of California at Davis; California; USA has parent organization: University of Pittsburgh; Pennsylvania; USA has parent organization: Oregon Health and Science University; Oregon; USA has parent organization: University of California at San Francisco; California; USA has parent organization: University of Maryland; Maryland; USA has parent organization: Stanford University; Stanford; California has parent organization: Vanderbilt University; Tennessee; USA has parent organization: Brandeis University; Massachusetts; USA has parent organization: University of California at Los Angeles; California; USA has parent organization: Tulane University; Louisiana; USA has parent organization: University of Minnesota Twin Cities; Minnesota; USA |
James S. McDonnell Foundation ; MacArthur Foundation |
Free, Freely available | nif-0000-31447 | http://www.macbrain.org/faces/indexhtm | SCR_003271 | SciCrunch Registry | Research Network in Early Experience Brain Development | 2026-10-31 12:13:22 | 49 | |||||
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Stanford Translational Research Integrated Database Environment and Clinical Data Warehouse Resource Report Resource Website |
Stanford Translational Research Integrated Database Environment and Clinical Data Warehouse (RRID:SCR_003453) | STRIDE and the CDW, STRIDE | data or information resource, narrative resource, software resource, standard specification | Research and development project at Stanford University to create a standards-based informatics platform supporting clinical and translational research. STRIDE consists of three integrated components: a clinical data warehouse, based on the HL7 Reference Information Model (RIM), containing clinical information on over 1.6 million pediatric and adult patients cared for at Stanford University Medical Center since 1995; an application development framework for building research data management applications on the STRIDE platform and a biospecimen data management system. STRIDE's semantic model uses standardized terminologies, such as SNOMED, RxNorm, ICD and CPT, to represent important biomedical concepts and their relationships. STRIDE receives clinical data for research use via HL7 feeds from both SUMC hospitals: Lucile Packard Children's Hospital and Stanford Hospital and Clinics. This clinical data is used to support a wide variety of translational research services including: * Anonymized Patient Research Cohort Discovery * Electronic Chart Review for Research * IRB-Approved Clinical Data Extraction * Biospecimen Data Management * Multimedia Research * Data Management and Research Registries STRIDE is a highly secure environment utilizing encryption, fine-grained access control, robust auditing and detailed data segregation. Additionally, STRIDE has a robust access control framework with well-defined access granting authorities and access control groups. Consequently STRIDE meets or exceeds the requirements of the HIPAA Privacy and Security regulations. Privacy protection is further enhanced by requiring IRB approval for all research projects using STRIDE clinical data. From a technology and standards perspective, STRIDE is hosted on the Oracle 11g database platform. STRIDE application software provides access to the web services of a three-tier infrastructures using SSL encryption with strong authentication. These programs are cross-platform, self-updating thick-client applications that provides a rich user interface for data entry, retrieval and review as well as image manipulation and annotation. STRIDE makes extensive use of XML technologies for representation of structured meta data, distributed systems technologies using JSON for secure remote communication between client and server, and Swing graphical interface components providing a rich widget-set as well as advanced imaging and graphing capabilities. Users of the STRIDE Research Desktop Client can perform rapid data entry into structured fields, compose complex queries, and interact securely with clinical, research and imaging data. | clinical, hospital, research, translational, informatics, platform, database, pediatric, adult, data management, biospecimen, ctsa, clinical data, oracle, image, imaging data |
is listed by: Biositemaps has parent organization: Stanford University; Stanford; California is parent organization of: STRIDE Virtual Biospecimen Bank |
PMID:20351886 | Free, Freely available | nif-0000-33359 | https://med.stanford.edu/irt/researchtech.html | SCR_003453 | SciCrunch Registry | STRIDE and the Clinical Data Warehouse, STRIDE Clinical Data Warehouse | 2026-10-31 12:13:26 | 0 | |||||
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Stanford CoreNLP Resource Report Resource Website 1+ mentions |
Stanford CoreNLP (RRID:SCR_014778) | data analysis software, data processing software, software application, software resource | A Java suite of core natural language analysis tools. It can take raw human language text input and give multiple outputs, including the base forms of words, their parts of speech, and marked up structure of sentences in terms of phrases or word dependencies. Supported languages include English, Arabic, Chinese, French, German, and Spanish. | java, language analysis, natural language, human language |
is used by: Biocemid is used by: Limitation-Recognizer has parent organization: Stanford University; Stanford; California works with: word2vec is hosted by: GitHub |
Acknowledgement requested, Available for download | https://github.com/stanfordnlp/CoreNLP http://search.maven.org/#search%7Cga%7C1%7Ca%3A%22stanford-corenlp%22 | SCR_014778 | SciCrunch Registry | 2026-10-31 12:16:25 | 6 | |||||||||
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Neurobiological Image Management System Resource Report Resource Website 1+ mentions |
Neurobiological Image Management System (RRID:SCR_006594) | NIMS | data management software, software application, software resource | A scientific data management system specifically designed for neuroimaging data. NIMS automatically reaps data from the measurement instrument (e.g., MR scanner), sorts and organizes the data based on header information, does some basic processing on the data, and makes the data available to authorized users through a web-based interface. The data are also available from the command-line through a FUSE-based filesystem. | computational neuroscience, computed tomography, eeg, meg, electrocorticography, magnetic resonance, pet, spect, neuroimaging |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Stanford University; Stanford; California |
MIT License | nlx_155895 | http://www.nitrc.org/projects/nims | SCR_006594 | SciCrunch Registry | NIMS: Neurobiological Image Management System, Neuro-Image Management System, Neuro-Image Management System (NIMS) | 2026-10-31 12:14:32 | 7 |
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