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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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Johns Hopkins University; Maryland; USA Resource Report Resource Website 10+ mentions |
Johns Hopkins University; Maryland; USA (RRID:SCR_010247) | JHU | university | Johns Hopkins University is private research university in Baltimore, Maryland. Founded in 1876, university was named for its first benefactor, American entrepreneur, abolitionist, and philanthropist Johns Hopkins. | private, university, Baltimore, Maryland |
uses: DIRECT2experts is affiliated with: Diabetes Research Centers is related to: Alzheimers Disease Genetics Consortium is related to: International AMD Genetics Consortium is related to: ABX Guide is related to: Clinical and Translational Science Awards Consortium is parent organization of: SynaptomeDB is parent organization of: Johns Hopkins University School of Medicine; Baltimore, Maryland; USA is parent organization of: sim4cc is parent organization of: MRI Studio is parent organization of: CKID A Prospective Cohort Study of Kidney Disease in Children is parent organization of: Nonalcoholic Steatohepatitis Clinical Research Network is parent organization of: ASprofile is parent organization of: GlimmerHMM is parent organization of: Neurogenetics and Behavior Center is parent organization of: Human Proteinpedia is parent organization of: Schramm Lab Spinal Cord Atlases is parent organization of: NetPath is parent organization of: Academic Drug Discovery Consortium is parent organization of: CardioVascular Research Grid (CVRG) is parent organization of: Johns Hopkins University; Undergraduate Neuroscience Program is parent organization of: Bowtie is parent organization of: FLASH is parent organization of: TMAJ is parent organization of: Gastroparesis Clinical Research Consortium is parent organization of: HPRD - Human Protein Reference Database is parent organization of: Atlweb: Alternatives to Animal Testing is parent organization of: Center for Inherited Disease Research is parent organization of: The Protein Coil Library is parent organization of: HIV Guide is parent organization of: Johns Hopkins School of Medicine Department of Molecular and Comparative Pathobiology is parent organization of: Classic Articles in Visual Perception is parent organization of: Experimental Man Blog is parent organization of: MYC Cancer Gene is parent organization of: JIST: Java Image Science Toolkit is parent organization of: DOTS WM tract segmentation is parent organization of: JHU Proj. in Applied Medical Imaging is parent organization of: LDDMM is parent organization of: Johns Hopkins Bloomberg School of Public Health; Maryland; USA is parent organization of: Genetic Resources Core Facility is parent organization of: LS-SNP/PDB is parent organization of: JHU Deep Sequencing and Microarray Core is parent organization of: Glimmer is parent organization of: Johns Hopkins University Labs and Facilities is parent organization of: CRAVAT is parent organization of: John Hopkins University, In-Vivo Cellular Molecular Imaging Center is parent organization of: RosettaDock is parent organization of: CoGAPS is parent organization of: Blox is parent organization of: National Resource for Quantitative Functional MRI is parent organization of: Myrna is parent organization of: CAWorks is parent organization of: Principal Components Analysis of Scalar, Vector, and Mesh Vertex Data is parent organization of: Longitudinal MS Lesion Imaging Archive is parent organization of: Image Synthesis Tools is parent organization of: Atlases of amygdala and hippocampus for pediatric populations is parent organization of: HISAT2 is parent organization of: neurodata is parent organization of: Johns Hopkins University Integrated Imaging Center Core Facility is parent organization of: Center for Computational Biology at JHU is parent organization of: TopHat is parent organization of: PyRosetta is parent organization of: Ecosystem for Multi-modal Brain-behavior Experimentation and Research is parent organization of: Brain Observatory Storage Service and Database (BossDB) is parent organization of: Johns Hopkins University School of Medicine Genetic Resources Core Facility |
, nlx_97251, Wikidata: Q193727, GRID: grid.21107.35, ISNI: 0000 0001 2171 931, Crossref Funder ID: 100007880 | https://ror.org/00za53h95 | SCR_010247 | SciCrunch Registry | 2026-10-17 01:27:47 | 21 | ||||||||
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ABX Guide Resource Report Resource Website 1+ mentions |
ABX Guide (RRID:SCR_008214) | ABX Guide | continuing medical education, data or information resource, database, training resource | Concise, clinically useful information for diagnosing, managing and treating infectious diseases in adults; however it does cover some pediatric topics including vaccines. It is designed for primary care providers and other non-infectious disease specialists as a tool that can be used at the point of care to assist in prescribing antibiotics. | drug interaction, drug, evaluation, antibiotic, clinical, contraindication, diagnosis, disease, disease state, dosing, immunization, indication, infectious disease, literature review, pathogen, pharmacokinetics, side effect, treatment, vaccine, antibiotic, adult, pediatric, vaccine, point of care |
is related to: Johns Hopkins Point of Care Guides is related to: Johns Hopkins University; Maryland; USA |
Infectious disease | Available for purchase | nif-0000-21292 | SCR_008214 | SciCrunch Registry | Johns Hopkins ABX Guide, Johns Hopkins Antibiotic Guide | 2026-10-17 01:27:04 | 4 | ||||||
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Clinical and Translational Science Awards Consortium Resource Report Resource Website 1+ mentions |
Clinical and Translational Science Awards Consortium (RRID:SCR_008339) | CTSA | knowledge environment | National consortium of medical research institutions working together to transform the local, regional, and national environment to increase the efficiency and speed of clinical and translational research across the country. Consortium members share a common vision to reduce the time it takes for laboratory discoveries to become treatments for patients, to engage communities in clinical research efforts and to train clinical and translational researchers. This consortium includes 60 medical research institutions located throughout the nation, linking them together to energize the discipline of clinical and translational science. The CTSA consortium has five Strategic Goals: * National Clinical and Translational Research Capability * The Training and Career Development of Clinical and Translational Scientists * Consortium-Wide Collaborations * The Health of our Communities and the Nation * T1 Translational Research | biomedical, clinical, community, consortium, institution, laboratory, medical, patient, research, researcher, science, translational, translational research, treatment |
is related to: REDCap is related to: eBIRT is related to: VIVO is related to: CTSA ShareCenter is related to: CUSP is related to: CDART is related to: cTAKES is related to: CTSA-IP is related to: FURTHeR is related to: HUBzero is related to: ePRISM is related to: ResearchMatch is related to: SPARC Request is related to: Albert Einstein College of Medicine; New York; USA is related to: Clinical Research Resource HUB is related to: Eagle I is related to: CTSAconnect is related to: Boston University; Massachusetts; USA is related to: Case Western Reserve University; Ohio; USA is related to: Columbia University; New York; USA is related to: Duke University; North Carolina; USA is related to: Emory University; Georgia; USA is related to: Morehouse School of Medicine; Georgia; USA is related to: Georgia Institute of Technology; Georgia; USA is related to: Georgetown University; Washington D.C.; USA is related to: Howard University; Washington D.C. is related to: Indiana University School of Medicine; Indiana; USA is related to: Johns Hopkins University; Maryland; USA is related to: Mayo Clinic is related to: Medical College of Wisconsin; Wisconsin; USA is related to: Medical University of South Carolina; South Carolina; USA is related to: Icahn School of Medicine at Mount Sinai; New York; USA is related to: New York University School of Medicine; New York; USA is related to: Northwestern University; Illinois; USA is related to: Oregon Health and Science University; Oregon; USA is related to: Penn State Milton S. Hershey Medical Center; Pennsylvania; USA is related to: Stanford University; Stanford; California is related to: Ohio State University; Ohio; USA is related to: Rockefeller University; New York; USA is related to: Scripps Research Institute is related to: University of Alabama at Birmingham; Alabama; USA is related to: University of North Carolina at Chapel Hill; North Carolina; USA is related to: University of Texas Health Science Center at San Antonio; Texas; USA is related to: University of Utah; Utah; USA is related to: Tufts University; Massachusetts; USA is related to: University of Arkansas for Medical Sciences; Arkansas; USA is related to: University of California at Los Angeles; California; USA is related to: University of California at Davis; California; USA is related to: University of California at Irvine; California; USA is related to: University of California at San Diego; California; USA is related to: University of California at San Francisco; California; USA is related to: University of Chicago; Illinois; USA is related to: University of Cincinnati; Ohio; USA is related to: University of Colorado Denver; Colorado; USA is related to: University of Florida; Florida; USA is related to: University of Illinois at Chicago; Illinois; USA is related to: University of Iowa; Iowa; USA is related to: University of Kansas Medical Center; Kansas; USA is related to: University of Massachusetts Medical School; Massachusetts; USA is related to: University of Miami; Florida; USA is related to: University of Michigan; Ann Arbor; USA is related to: University of Minnesota Twin Cities; Minnesota; USA is related to: University of New Mexico; New Mexico; USA is related to: University of Pennsylvania; Philadelphia; USA is related to: University of Pittsburgh; Pennsylvania; USA is related to: University of Rochester School of Medicine and Dentistry; New York; USA is related to: University of Southern California; Los Angeles; USA is related to: University of Texas Health Science Center at Houston; Texas; USA is related to: University of Texas Medical Branch at Galveston is related to: University of Texas Southwestern Medical Center; Texas; USA is related to: University of Washington; Seattle; USA is related to: University of Wisconsin-Madison; Wisconsin; USA is related to: Vanderbilt University; Tennessee; USA is related to: Meharry Medical College is related to: Virginia Commonwealth University; Virginia; USA is related to: Washington University in St. Louis; Missouri; USA is related to: Weill Cornell Medical College; New York; USA is related to: Hunter College; New York; USA is related to: Yale University; Connecticut; USA has parent organization: Vanderbilt University; Tennessee; USA has parent organization: U.S. Department of Health and Human Services |
National Center for Advancing Translational Sciences 2U54TR000123 | nif-0000-24968 | http://www.ctsaweb.org/ | SCR_008339 | SciCrunch Registry | Clinical & Translational Science Awards, Clinical and Translational Science Awards | 2026-10-17 01:27:01 | 6 | ||||||
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Alzheimers Disease Genetics Consortium Resource Report Resource Website 10+ mentions |
Alzheimers Disease Genetics Consortium (RRID:SCR_004004) | ADGC | consortium, data or information resource, data set, organization portal, portal | Consortium to conduct genome-wide association studies (GWAS) to identify genes associated with an increased risk of developing late-onset Alzheimer''''s disease (LOAD). The goal of the ADGC is to identify genetic variants associated with risk for AD. It plans to do this through the following collaborative goals: # Identify genes responsible for AD susceptibility # Identify AD sub-phenotype genes rate-of-progression plaque / tangle load / distribution biomarker variability # Generate a genetic data resource for the AD research community Data generated by ADGC is available at the following website: https://www.niagads.org/content/alzheimers-disease-genetics-consortium-adgc-collection | genome-wide association study, gene, biomarker, basic science, genetic variant, genetics, african-american, caucasian |
is listed by: Consortia-pedia is related to: University of Pennsylvania Perelman School of Medicine; Pennsylvania; USA is related to: Icahn School of Medicine at Mount Sinai; New York; USA is related to: University of Washington; Seattle; USA is related to: Boston University; Massachusetts; USA is related to: Washington University in St. Louis; Missouri; USA is related to: Vanderbilt University; Tennessee; USA is related to: Oregon Health and Science University; Oregon; USA is related to: Columbia University; New York; USA is related to: University of Miami; Florida; USA is related to: Banner Alzheimer's Institute; Arizona; USA is related to: Indiana University; Indiana; USA is related to: University of Toronto; Ontario; Canada is related to: Mayo Clinic Florida; Florida; USA is related to: Johns Hopkins University; Maryland; USA is related to: Albert Einstein College of Medicine; New York; USA is related to: Genentech is related to: University of Gothenburg; Gothenburg; Sweden is related to: University of North Texas; Texas; USA is related to: University of Kentucky; Kentucky; USA is related to: University of Chicago; Illinois; USA is related to: University of Michigan; Ann Arbor; USA is related to: University of Virginia; Virginia; USA is related to: Florida Alzheimer's Disease Research Center is related to: Mayo Clinic is related to: Emory University; Georgia; USA is related to: New York University; New York; USA is related to: Stanford University; Stanford; California is related to: Northwestern University Feinberg School of Medicine; Illinois; USA is related to: University of Alabama; Alabama; USA is related to: University of Arkansas for Medical Sciences; Arkansas; USA is related to: University of San Diego; California; USA is related to: University of California at Irvine; California; USA is related to: University of California at Los Angeles; California; USA is related to: University of California at San Diego; California; USA is related to: University of California at San Francisco; California; USA is related to: University of Pittsburgh; Pennsylvania; USA is related to: University of Southern California; Los Angeles; USA is related to: University of Texas Southwestern Medical Center; Texas; USA is related to: National Alzheimer's Coordinating Center is related to: Childrens Hospital of Philadelphia - Research Institute; Pennsylvania; USA is related to: National Institute on Aging is related to: University of California at Davis; California; USA is related to: Mayo Clinic College of Medicine is related to: Wake Forest University; North Carolina; USA is related to: National Cell Repository for Alzheimer's Disease is related to: International Genomics of Alzheimers Project is related to: National Alzheimer's Coordinating Center has parent organization: University of Pennsylvania Perelman School of Medicine; Pennsylvania; USA |
NIA UO1AG032984 | nlx_158415 | SCR_004004 | SciCrunch Registry | Alzheimer''''s Disease Genetics Consortium (ADGC), Alzheimer''''s Disease Genetics Consortium | 2026-10-17 01:25:44 | 12 | |||||||
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International AMD Genetics Consortium Resource Report Resource Website 10+ mentions |
International AMD Genetics Consortium (RRID:SCR_004009) | IAMDGC | consortium, data or information resource, organization portal, portal | Consortium aiming to identify the remaining genetic risk variants for Age-related Macular Degeneration (AMD). To increase the statistical power needed to identify genes that have small, yet significant contributions to AMD, the consortium is conducting a meta-analysis on 15 Genome Wide Association Studies (GWAS) pooled from consortium members representing over 8,000 patients with advanced AMD (dry type, neovascular, or both) and 50,000 controls. In addition to verifying known genes, the consortium identified 19 new gene variants. The genes identified in these studies function in the immune system, cholesterol transport and metabolism, and formation and maintenance of connective tissue. This study provides a nearly complete picture of genetic heritability for AMD. | genetic variant, genome-wide association study, gene, risk factor, genetics, visual system, eye, late adult human, basic science, biomarker |
is related to: National Eye Institute (NEI) Commons is related to: Boston University; Massachusetts; USA is related to: University of Regensburg; Bavaria; Germany is related to: Vanderbilt University; Tennessee; USA is related to: Case Western Reserve University; Ohio; USA is related to: University of Pittsburgh; Pennsylvania; USA is related to: Harvard Medical School; Massachusetts; USA is related to: University of Edinburgh; Scotland; United Kingdom is related to: Queens University Belfast; Ireland; United Kingdom is related to: Columbia University; New York; USA is related to: Johns Hopkins University; Maryland; USA is related to: University of Cambridge; Cambridge; United Kingdom is related to: University of Southampton; Southampton; United Kingdom is related to: University College London; London; United Kingdom is related to: University of Athens; Athens; Greece is related to: University of Thessaly; Thessaly; Greece is related to: University of Sydney; Sydney; Australia is related to: University of Melbourne; Victoria; Australia is related to: Flinders University; Adelaide; Australia is related to: Lions Eye Institute for Transplant and Research is related to: University of Western Australia; Perth; Australia is related to: National Institute of Health and Medical Research; Rennes; France is related to: Centre dEtude du Polymorphisme Humain is related to: University of Pennsylvania; Philadelphia; USA is related to: University of Miami; Florida; USA is related to: Texas Biomedical Research Institute; Texas; USA is related to: University of Utah; Utah; USA is related to: University of California at San Diego; California; USA is related to: University of California at Los Angeles; California; USA is related to: Oregon Health and Science University; Oregon; USA is related to: University of Michigan; Ann Arbor; USA has parent organization: Case Western Reserve University; Ohio; USA has parent organization: National Eye Institute (NEI) Commons |
NEI | nlx_158429, SCR_013676 | SCR_004009 | SciCrunch Registry | International Age-related Macular Degeneration Genetics Consortium | 2026-10-17 01:25:47 | 13 | |||||||
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CoGAPS Resource Report Resource Website 10+ mentions |
CoGAPS (RRID:SCR_001479) | CoGAPS | software resource | Software that infers biological processes which are active in individual gene sets from corresponding microarray measurements. It achieves this inference by combining a MCMC matrix decomposition algorithm (GAPS) with a novel statistic inferring activity on gene sets. | gene expression, microarray |
is listed by: OMICtools has parent organization: Bioconductor has parent organization: Johns Hopkins University; Maryland; USA |
PMID:20810601 | Free, Available for download, Freely available | OMICS_01973 | SCR_001479 | SciCrunch Registry | Coordinated Gene Activity in Pattern Sets | 2026-10-17 01:24:55 | 38 | ||||||
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ASprofile Resource Report Resource Website 10+ mentions |
ASprofile (RRID:SCR_001833) | ASprofile | software resource | A suite of programs for extracting, quantifying and comparing alternative splicing (AS) events from RNA-seq data. | alternative splicing event, rna-seq, alternative splicing |
is listed by: OMICtools has parent organization: Johns Hopkins University; Maryland; USA |
NHGRI R01-HG006677 | PMID:24555089 | Free, Available for download, Freely available | OMICS_01942 | SCR_001833 | SciCrunch Registry | 2026-10-17 01:25:01 | 41 | ||||||
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Blox Resource Report Resource Website 1+ mentions |
Blox (RRID:SCR_006667) | Blox | data processing software, data visualization software, image analysis software, software application, software resource | A quantitative medical imaging and visualization program for use on brain MR, DTI, and MRS data. Programming Language: Java, JavaScript, Scheme | magnetic resonance imaging, diffusion tensor imaging, magnetic resonance spectroscopy, 3d visualization, brain, 3d rendering, neuroimaging, registration, segmentation, visualization, volume |
is listed by: Biositemaps has parent organization: SourceForge has parent organization: Kennedy Krieger Institute has parent organization: Johns Hopkins University; Maryland; USA |
GNU General Public License | nif-0000-00270 | http://pni.med.jhu.edu/blox/ | SCR_006667 | SciCrunch Registry | 2026-10-17 01:26:39 | 5 | |||||||
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Gastroparesis Clinical Research Consortium Resource Report Resource Website |
Gastroparesis Clinical Research Consortium (RRID:SCR_006673) | GpCRC | clinical trial, data or information resource, disease-related portal, portal, research forum portal, resource, topical portal | Perform clinical, epidemiological, and therapeutic research in gastroparesis and provide an infrastructure that can rapidly and efficiently design and conduct clinical trials for effective medical, surgical, or other interventions to improve treatment of patients with gastroparesis. The GpCRC studies comprise well characterized individuals with diabetic, surgical, and idiopathic gastroparesis. | etiology, natural history, therapy, treatment |
is listed by: ClinicalTrials.gov is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Research Resources has parent organization: Johns Hopkins University; Maryland; USA |
Gastroparesis | NIDDK | nlx_152831 | SCR_006673 | SciCrunch Registry | Gastroparesis Clinical Research Consortium (GpCRC) | 2026-10-17 01:26:40 | 0 | ||||||
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Johns Hopkins School of Medicine Department of Molecular and Comparative Pathobiology Resource Report Resource Website |
Johns Hopkins School of Medicine Department of Molecular and Comparative Pathobiology (RRID:SCR_008297) | JHU MCP | data or information resource, department portal, organization portal, portal | Provides leadership in biomedical research on animal and human diseases and assists with the health and humane care of research animals within the institution. | animal human, biomedical, comparative, disease, molecular, pathobiology | has parent organization: Johns Hopkins University; Maryland; USA | nif-0000-24378 | SCR_008297 | SciCrunch Registry | Molecular and Comparative Pathobiology, Department of Molecular and Comparative Pathobiology | 2026-10-17 01:27:01 | 0 | ||||||||
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FLASH Resource Report Resource Website 1000+ mentions |
FLASH (RRID:SCR_005531) | FLASh | data analysis software, data processing software, sequence analysis software, software application, software resource | Open source software tool to merge paired-end reads from next-generation sequencing experiments. Designed to merge pairs of reads when original DNA fragments are shorter than twice length of reads. Can improve genome assemblies and transcriptome assembly by merging RNA-seq data. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools is listed by: SoftCite is related to: shovill is related to: CLIP-Explorer has parent organization: Johns Hopkins University; Maryland; USA |
NHGRI R01 HG006677; NIGMS R01 GM083873; NLM R01 LM006845 |
PMID:21903629 | Free, Available for download, Freely available | biotools:flash, OMICS_01047 | https://sourceforge.net/projects/flashpage/files/, https://bio.tools/flash, https://sources.debian.org/src/flash/ | SCR_005531 | SciCrunch Registry | Fast Length Adjustment of SHort reads, Fast Length Adjustment of Short reads | 2026-10-17 01:26:21 | 2461 | ||||
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Glimmer Resource Report Resource Website 500+ mentions |
Glimmer (RRID:SCR_011931) | Glimmer | analysis service resource, data analysis service, production service resource, service resource, software resource | A software system for finding genes in microbial DNA, especially the genomes of bacteria, archaea, and viruses. | microbial, gene, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools is listed by: SoftCite is related to: Glimmer-MG is related to: GlimmerHMM has parent organization: Johns Hopkins University; Maryland; USA |
DOI:10.1093/nar/26.2.544 | Open unspecified license, OSI certified | OMICS_01486, biotools:glimmer | https://bio.tools/glimmer, https://sources.debian.org/src/tigr-glimmer/ | SCR_011931 | SciCrunch Registry | Glimmer - Microbial Gene-Finding System | 2026-10-17 01:28:24 | 687 | |||||
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Johns Hopkins University Labs and Facilities Resource Report Resource Website |
Johns Hopkins University Labs and Facilities (RRID:SCR_012375) | JHU Labs and Facilities, JHU Labs & Facilities | access service resource, core facility, data or information resource, portal, service resource | An Portal, Core facility |
is listed by: ScienceExchange is related to: JHU Deep Sequencing and Microarray Core has parent organization: Johns Hopkins University; Maryland; USA |
SciEx_1245 | SCR_012375 | SciCrunch Registry | Johns Hopkins University Labs & Facilities | 2026-10-17 01:28:35 | 0 | |||||||||
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DIRECT2experts Resource Report Resource Website 1+ mentions |
DIRECT2experts (RRID:SCR_013958) | collaboration tool, data or information resource, portal, software resource | An on-going project and collaboration tool where biomedical researchers can access to expertise and related resources across institutions, regardless of local platforms and tools. Users can work with participating institutions in order to connect to their existing research networking tools. Biomedical institutions that wish to participate must have a mature, deployed research networking tool and can commit resources to assessments. | collaboration too, project, project portal, biomedical institutions, biomedical researchers, research networking tool |
is used by: Albert Einstein College of Medicine; New York; USA is used by: Northwestern University; Illinois; USA is used by: Johns Hopkins University; Maryland; USA is used by: Harvard University; Cambridge; United States is used by: Scripps Research Institute is listed by: Connected Researchers is related to: Connected Researchers |
National Center for Research Resources | Available to the biomedical research community | SCR_013958 | SciCrunch Registry | Distributed Interoperable Research Experts Collaboration Tool, DIRECT2experts network | 2026-10-17 01:28:56 | 2 | ||||||||
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neurodata Resource Report Resource Website 50+ mentions |
neurodata (RRID:SCR_014264) | data or information resource, data repository, image repository, portal, project portal, service resource, software resource, storage service resource | Project portal dedicated to understand animal and machine intelligence and repository of data and tools. Suite of tools to analyze and graph imaging data. Image and data repository for large, publicly available neuro-specific data files and images. Contains tools for analytics, databases, cloud computing, and Web-services applied to both big neuroimages and big neurographs. | neuroscience, neuroimage, graph explorer, data repository, johns hopkins university, BRAIN Initiative, FASEB list |
is related to: Open Connectome Project has parent organization: Johns Hopkins University; Maryland; USA |
DARPA ; NIBIB R01 EB016411; NIDA R01 DA036400; NIH Office of the Director R01 OD19123; NSF 1707298; NSF ACI-1261715; NSF OCI-1040114 |
Free, Freely available | https://neurodata.io/tools/ | SCR_014264 | SciCrunch Registry | 2026-10-17 01:28:50 | 94 | ||||||||
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Diabetes Research Centers Resource Report Resource Website 1+ mentions |
Diabetes Research Centers (RRID:SCR_014535) | data or information resource, disease-related portal, organization portal, portal, resource, topical portal | Diabetes Research Centers (DRC) is an integrated program of diabetes, endocrinology and metabolism research. | diabetes research, endocrinology research, metabolism research |
lists: Preventing Early Renal Loss in Diabetes (PERL) lists: Clinical Trials in Organ Transplantation (CTOT) lists: Stanford Diabetes Research Center lists: Clinical Islet Transplantation Consortium (CITC) lists: Restoring Insulin Secretion Consortium (RISE) lists: Digestive Disease Centers lists: Drug-Induced Liver Injury Network lists: Nutrition and Obesity Research Centers lists: Chronic Renal Insufficiency Cohort Study lists: Glycemic Reduction Approaches in Diabetes: A Comparative Effectiveness Study (GRADE) lists: Diabetes Prevention Type 1 lists: Monogenic Diabetes Registry lists: Chronic Prostatitis Collaborative Research Network Clinical Trial- Alfuzosin lists: National Glycohemoglobin Standardization Program is listed by: NIDDK Information Network (dkNET) is affiliated with: University of California at San Diego; California; USA is affiliated with: University of California at Los Angeles; California; USA is affiliated with: University of California at San Francisco; California; USA is affiliated with: Columbia University; New York; USA is affiliated with: Albert Einstein College of Medicine; New York; USA is affiliated with: Indiana University; Indiana; USA is affiliated with: Johns Hopkins University; Maryland; USA is affiliated with: University of Maryland; Maryland; USA is affiliated with: Joslin Diabetes Center is affiliated with: University of Alabama at Birmingham; Alabama; USA is affiliated with: University of Michigan; Ann Arbor; USA is affiliated with: University of Pennsylvania; Philadelphia; USA is affiliated with: University of Washington; Seattle; USA is affiliated with: Vanderbilt University; Tennessee; USA is affiliated with: Washington University in St. Louis; Missouri; USA is affiliated with: Yale University; Connecticut; USA is affiliated with: Yale Diabetes Research Center is affiliated with: University of Washington Diabetes Research Center is affiliated with: Penn Diabetes Research Center is affiliated with: University of Chicago Diabetes Research and Training Center is affiliated with: University of Alabama at Birmingham Diabetes Research Center is affiliated with: University of California San Francisco Diabetes Research Center is affiliated with: University of California San Diego - University of California Los Angeles Diabetes Research Center is affiliated with: Indiana Diabetes Research Center is affiliated with: Columbia Diabetes Research Center is affiliated with: Einstein-Mount Sinai Diabetes Research Center is affiliated with: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases has organization facet: Joslin Diabetes Center has organization facet: Yale Diabetes Research Center has organization facet: University of Washington Diabetes Research Center has organization facet: Penn Diabetes Research Center has organization facet: University of Chicago Diabetes Research and Training Center has organization facet: Michigan Diabetes Research Center has organization facet: University of Alabama at Birmingham Diabetes Research Center has organization facet: University of California San Francisco Diabetes Research Center has organization facet: University of California San Diego - University of California Los Angeles Diabetes Research Center has organization facet: Indiana Diabetes Research Center has organization facet: Columbia Diabetes Research Center has organization facet: Einstein-Mount Sinai Diabetes Research Center has organization facet: Stanford Diabetes Research Center has organization facet: Boston Area Diabetes Endocrinology Research Center has organization facet: Johns Hopkins University - University of Maryland Diabetes Research Center has organization facet: Vanderbilt Diabetes Research and Training Center has organization facet: Washington University School of Medicine Diabetes Research Center has organization facet: Center for American Indian and Alaska Native Diabetes Translational Research |
Type 1 diabetes, Type 2 diabetes, Diabetes | Available to the research community | SCR_014535 | SciCrunch Registry | 2026-10-17 01:28:47 | 1 | |||||||||
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DOTS WM tract segmentation Resource Report Resource Website 100+ mentions |
DOTS WM tract segmentation (RRID:SCR_009459) | DOTS | data processing software, image analysis software, segmentation software, software application, software resource | A fast, scalable tool developed at the Johns Hopkins University to automatically segment the major anatomical fiber tracts within the human brain from clinical quality diffusion tensor MR imaging. With an atlas-based Markov Random Field representation, DOTS directly estimates the tract probabilities, bypassing tractography and associated issues. Overlapping and crossing fibers are modeled and DOTS can also handle white matter lesions. DOTS is released as a plug-in for the MIPAV software package and as a module for the JIST pipeline environment. They are therefore cross-platform and compatible with a wide variety of file formats. | magnetic resonance, diffusion tensor mr imaging, dti, fiber tract, brain |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: MIPAV: Medical Image Processing and Visualization is related to: JIST: Java Image Science Toolkit has parent organization: Johns Hopkins University; Maryland; USA |
NIDA K25DA025356 | PMID:21718790 | Free | nlx_155605 | SCR_009459 | SciCrunch Registry | Diffusion-Oriented Tract Segmentation White Matter tract segmentation, Diffusion-Oriented Tract Segmentation | 2026-10-17 01:27:16 | 116 | |||||
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Schramm Lab Spinal Cord Atlases Resource Report Resource Website |
Schramm Lab Spinal Cord Atlases (RRID:SCR_003265) | Schramm Lab Spinal Cord Atlases | atlas, data or information resource | Serial histological sections of rat spinal cord at the lumbar and thoracic levels. Serial sections of rat spinal cord cut in the horizontal and sagittal planes. Also transverse and sagittal section series of the postnatal thoracic spinal cord immunolabeled for SMI-32. | histological section, lumbar spinal cord, rat, serial tissue section, thoracic spinal cord, spinal cord, lumbar, horizontal, sagittal, postnatal, transverse | has parent organization: Johns Hopkins University; Maryland; USA | Free, Freely available | nif-0000-00021 | SCR_003265 | SciCrunch Registry | 2026-10-17 01:33:09 | 0 | ||||||||
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HPRD - Human Protein Reference Database Resource Report Resource Website 1000+ mentions |
HPRD - Human Protein Reference Database (RRID:SCR_007027) | HPRD | data or information resource, database | Database that represents a centralized platform to visually depict and integrate information pertaining to domain architecture, post-translational modifications, interaction networks and disease association for each protein in the human proteome. All the information in HPRD has been manually extracted from the literature by expert biologists who read, interpret and analyze the published data. | protein, disease, network, post-translational, proteome, protein binding, protein s, protein c, pathway, protein-protein interaction, protein expression, subcellular localization, phosphorylation motif, signaling pathway, protein sequence, blast, molecule, domain, motif, post-translational modification, protein isoform, FASEB list |
is used by: Mutation Annotation and Genomic Interpretation is used by: Pathway Analysis Tool for Integration and Knowledge Acquisition is used by: GEMINI is listed by: re3data.org is related to: Human Proteinpedia is related to: MatrixDB is related to: Interaction Reference Index is related to: Pathway Commons is related to: ConsensusPathDB is related to: Gene Ontology is related to: Agile Protein Interactomes DataServer has parent organization: Johns Hopkins University; Maryland; USA has parent organization: Institute of Bioinformatics; Bangalore; India |
PMID:18988627 PMID:16381900 PMID:14525934 |
Acknowledgement requested, Free, Non-commercial, Commercial requires license | nif-0000-00137, r3d100010978 | https://doi.org/10.17616/R3MK9N | SCR_007027 | SciCrunch Registry | Human Protein Reference Database | 2026-10-17 01:33:07 | 1311 | |||||
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The Protein Coil Library Resource Report Resource Website 1+ mentions |
The Protein Coil Library (RRID:SCR_008233) | data or information resource, database | The Protein Coil Library is a library of protein structure fragments derived from the Protein Data Bank (PDB). The fragments in this library are those fragments in the PDB that cannot be classified as either alpha-helix or beta-strand. Three-dimensional structures as well as side-chain and backbone torsion angles are stored in the database. The Protein Coil Library allows rapid and comprehensive access to non-alpha-helix and non-beta-strand fragments contained in the Protein Data Bank (PDB). The library contains both sequence and structure information together with calculated torsion angles for both the backbone and side chains. Several search options are implemented, including a query function that uses output from popular PDB-culling servers directly. Additionally, several popular searches are stored and updated for immediate access. The library is a useful tool for exploring conformational propensities, turn motifs, and a recent model of the unfolded state. The library stores the complete torsion angle descriptions for the fragments as well as the three dimensional structures of the fragments themselves. The goal of extracting and pre-calculating this data is to allow for more straightforward investigation of peptide structure without the background of secondary structure elements. In addition to searching by PDB ID, it is possible to download a particular size class, perform a batch search of PDB/chain ID''s, or download precompiled lists of PDB ID''s of interest (PDB Select, etc.). For users interested in browsing the entire database at once or maintaining their own locally-updated copy of the library, FTP access instructions are also provided. The files stored in the coil library FTP site or returned after a batch search are organized heirarchically by PDB ID. This is done to reduce filesystem access times and fascilitate searches using the UNIX find utility. At the lowest directory level in the heirarchy, files are further sorted by fragment length. As a result, the number of files in a particular directory is generally less then 50, yielding relatively fast access on UNIX/Linux filesystems. The heirarchical organization is based on the middle two letters of the PDB ID. For example, hen egg lysozyme, which has a PDB ID of 1HEL, will be located in the directory h/he/. At the final level, fragments of varying sizes are stored in directories that correspond to their fragment length. Again, using lysozyme as an example, any seven-residue fragments, if they exist, will reside in the directory h/he/7/. Similarly, seven-residue fragments from 2HEX and 1HE0 will also be in this location. Sponsors: The Protein Coil Library is funded by Johns Hopkins University. | element, fragment, alpha helix, angle, backbone, beta, coil, lysozyme, peptide, protein, protein structure databases, secondary, sequence, side chain, strand, structure, torsion | has parent organization: Johns Hopkins University; Maryland; USA | nif-0000-21338 | SCR_008233 | SciCrunch Registry | The Coil Library | 2026-10-17 01:33:59 | 1 |
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