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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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OMERO Resource Report Resource Website 100+ mentions |
OMERO (RRID:SCR_002629) | OMERO | data management software, data processing software, data visualization software, image analysis software, software application, software resource | Client-server software for management, visualization, and analysis of biological microscopy images. OMERO handles images in a secure central repository where users can view, organize, analyze and share data from anywhere with internet access. Work with images from a desktop app (Windows, Mac or Linux), from the web or from 3rd party software. | light microscopy, electron microscopy, genotype, archiving, data repository, data sharing, image, metadata |
is listed by: FORCE11 is related to: Bio-Formats has parent organization: OME - Open Microscopy Environment |
BBSRC BB/G022585; BBSRC BB/I000755; BBSRC BB/G022577; Jisc REXDAT03 |
PMID:22373911 | Free, Available for download, Freely available | nlx_156069 | SCR_002629 | SciCrunch Registry | OMERO - Open Microscopy Environment Remote Objects, Open Microscopy Environment Remote Objects, OME Remote Objects | 2026-09-19 12:50:05 | 190 | |||||
|
OME - Open Microscopy Environment Resource Report Resource Website 1+ mentions |
OME - Open Microscopy Environment (RRID:SCR_008849) | OME | data or information resource, narrative resource, software resource, source code, standard specification | Open tools to support data management for biological light microscopy produced by a multi-site collaborative effort among academic laboratories and a number of commercial entities. Designed to interact with existing commercial software, all OME formats and software are free, and all OME source code is available under the GNU General public license or through commercial license from Glencoe Software. OME is developed as a joint project between research-active laboratories at the Dundee, NIA Baltimore, and Harvard Medical School and LOCI. In addition, OME has active collaborations with many imaging and informatics groups. While many other applications could use OME''s architecture and design, their specific implementation is focused on biological and biomedical imaging. Those interested in applying OME''s technology to other applications should contact the developers. OME work is divided into several different standards and software projects: * Bio-Formats: A Java-based library for reading and writing over 90 microscopy file formats. * OMERO Software: The Java-based OMERO software project, which currently includes tools for storing, visualizing, managing, and annotating microscopic images and metadata. * OME-XML & OME-TIFF: The OME-XML and OME-TIFF file format specifications, which are open file formats for sharing microscope image data. * OME Server: This was the original OME server project which has now ended and is a legacy product. It implements image-based analysis of cellular dynamics and image-based screening of cellular localization or phenotypes, and included a fully developed version of the 2003 version of OME-XML Schema language. | light microscopy, imaging, biomedical imaging, image, microscope, biomedical |
has parent organization: University of Dundee; Scotland; United Kingdom is parent organization of: Bio-Formats is parent organization of: OMERO is parent organization of: OME-TIFF Format |
Aging | PMID:15892875 PMID:20513764 |
GNU General Public License, Commercial license, (Glencoe Software) | nlx_146268 | SCR_008849 | SciCrunch Registry | Open Microscopy Environment | 2026-09-19 12:51:46 | 8 | |||||
|
Bio-Formats Resource Report Resource Website 50+ mentions |
Bio-Formats (RRID:SCR_000450) | Bio-Formats | software application, software library, software resource, software toolkit, standalone software | Standalone software Java library for reading microscopy image data files in any format and writing image data using standardized, open formats. It currently reads and converts more than 120 file formats to the OME-TIFF data standard. | Java library, reading microscopy image data files, writing image data, standardized format, open format, |
is listed by: FORCE11 is listed by: Debian is related to: OMERO is related to: OME-TIFF Format has parent organization: OME - Open Microscopy Environment |
Wellcome Trust | Free, Available for download, Freely available | nif-0000-30175 | http://www.force11.org/node/4810, http://www.loci.wisc.edu/software/bio-formats, https://sources.debian.org/src/libbio-formats-java/ | SCR_000450 | SciCrunch Registry | , BioFormats, Bio-Formats Library, The Bio-Formats Library | 2026-09-19 12:49:23 | 61 | |||||
|
FORCE11 Resource Report Resource Website 10+ mentions |
FORCE11 (RRID:SCR_005334) | FORCE11 | blog, community building portal, data or information resource, knowledge environment, narrative resource, portal | A collaboration which works to transform scholarly communications through advanced use of computers and the Web. FORCE11 advocates the digital publishing of papers in order to enable more effective scholarly communication. The virtual community also advocates the publication of software tools and research communication by means of social media channels. As such, FORCE11 provides access to information and tools for the wider scientific community. | scholarly communication, scholarship, dissemination, data sharing, knowledge, information technology, semantics, digital publishing, information gathering, research communication, e-scholarship, digital object, scientific communication |
lists: Scholarly Ontologies Project lists: Academia.edu lists: StratML lists: Evernote lists: NPG publishing format lists: Fiduswriter lists: Altmetric Bookmarklet lists: Altmetric Explorer lists: Epistemio lists: Hypothes.is lists: Bio-Formats lists: iSpyBio.com lists: BioLexicon lists: Craig Mod lists: KLEIO lists: aTag Generator lists: Knowledge Engineering from Experimental Design lists: Utopia Docs lists: Zebrafish - SCORE Imaging: Specimen in a Corrected Optical Rotational Enclosure lists: Semantic Measures Library lists: Open Education Database lists: Brainspell lists: IPython lists: Adobe FormsCentral lists: Altmetric API lists: myExperiment lists: ISA Infrastructure for Managing Experimental Metadata lists: Minimum Information for Biological and Biomedical Investigations lists: A modular structure for scientific articles in an electronic environment lists: Liquid Publications: Scientific Publications meet the Web lists: AQnowledge Bookmarklet lists: Authorea lists: Bamboo DiRT lists: Altmetric Badges lists: ESIP Data Management Short Course for Scientists lists: Etherpad lists: Commons In A Box lists: CKAN lists: DMPTool lists: eScholarship lists: Git2PROV lists: OMERO lists: GitHub lists: GROTOAP lists: ImpactStory lists: JCB DataViewer lists: Memento lists: OME-TIFF Format lists: OpenDOAR lists: Open Journal Systems lists: Paper Rejection Repository lists: PLoS Impact Explorer lists: RDFaCE lists: Scholarly Open Access lists: ShareLaTeX lists: Mendeley lists: W3C Provenance Incubator Group Wiki lists: A.nnotate lists: Annotation Ontology lists: Support-of-PDF-annotations lists: Neuroscience Information Framework lists: AlzSWAN Knowledge Base lists: ResearchCompendia lists: resExomeDB lists: SobekCM lists: W3C Open Annotation Community Group lists: Webmaker lists: Wikispaces lists: Mobile Assay lists: WorkingWiki lists: Overleaf lists: Xournal lists: Citation Style Language lists: EnablingOpenScholarship lists: JournalGuide lists: Mindtouch DekiWiki lists: Knowledge Blog lists: DataCite lists: FAIRsharing lists: FigShare lists: CiTO - the Citation Typing Ontology lists: DOAJ - Directory of Open Access Journals lists: Code4Lib Journal WordPress Customizations lists: U-Compare lists: SciCrunch Registry lists: Google Docs lists: CSIBS lists: Europe PubMed Central lists: ORNL DAAC Data Product Citation Policy lists: Pensoft lists: OpenCalais lists: Universal Numerical Fingerprint lists: FAIRSharing Catalogue of Standards lists: Nanopub.org lists: JISC Open Citations lists: W3C Provenance Working Group lists: Workflow4Ever lists: Scholarly Electronic Publishing Bibliography lists: ROARMAP: Registry of Open Access Repositories Mandatory Archiving Policies lists: ROAR lists: total impact.org lists: Publish or perish lists: Scalar lists: PDFX lists: lapdftext lists: Cohere lists: Data Citation Awareness lists: DataCite Ontology lists: Semantic MediaWiki lists: Rubriq lists: VisTrails lists: RSC Prospect lists: HyBrow (Hypothesis Browser) lists: Biotea lists: crowdLabs lists: Argumentative Zoning: Information Extraction from Scientific Articles lists: Synapse lists: BioCreative lists: EZID lists: ResearchGate lists: F1000: Faculty of 1000 Post-Publication Peer Review lists: Acumen Consortium lists: DOI lists: GREC Corpus lists: National Centre for Text Mining lists: SPAR - Semantic Publishing and Referencing Ontologies lists: re3data.org lists: DataUp lists: Open Archives Initiative - Object Reuse and Exchange Initiative lists: Sapienta lists: OBO lists: GENIA Project: Mining literature for knowledge in molecular biology lists: ORCID - Open Researcher and Contributor ID lists: Wikibooks lists: CERMINE lists: CiteAb lists: iAnnotate lists: Eagle I lists: AcroMine lists: FACTA+. lists: Open Provenance Model lists: RightField lists: SEEK lists: BioPortal lists: Reflect lists: Ontology Development and Information Extraction lists: PubMed lists: Open PHACTS lists: NIFSTD lists: Open Provenance Model Vocabulary lists: MEDIE lists: Ontology for Biomedical Investigations lists: Antibody Registry lists: Semantic Web Applications in Neuromedicine (SWAN) Ontology is related to: ShareLaTeX is related to: ResearchCompendia is related to: Overleaf has parent organization: University of California at San Diego; California; USA |
Gordon and Betty Moore Foundation | Free, Public, The community can contribute to this resource, Acknowledgement requested | nlx_149434 | SCR_005334 | SciCrunch Registry | FORCE11 - the Future of Research Communications and e-Scholarship, Force 11 | 2026-09-19 12:50:51 | 15 |
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