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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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Public Health Genomics Resource Report Resource Website 500+ mentions |
Public Health Genomics (RRID:SCR_006462) | data or information resource, narrative resource, organization portal, podcast, portal, radio, training resource | The Office of Public Health Genomics (OPHG) aims to integrate genomics into public health research, policy, and programs. Doing so could improve interventions designed to prevent and control the country''s leading chronic, infectious, environmental, and occupational diseases. OPHG''s efforts focus on conducting population-based genomic research, assessing the role of family health history in disease risk and prevention, supporting a systematic process for evaluating genetic tests, translating genomics into public health research and programs, and strengthening capacity for public health genomics in disease prevention programs. Goals: To improve public health interventions of diseases of major public health importance, including chronic, infectious, environmental, and occupational diseases, through six major initiatives: * Evaluation of Genomic Applications in Practice and Prevention (EGAPP), * Human Genome Epidemiology Network (HuGENet), * NHANES Collaborative Genomics Project, * Family History Public Health Initiative, * Genomics Translation Research and Programs, and, * Genomic Applications in Practice and Prevention Network (GAPPNet). | environmental, genetics, chronic, disease, genomic, health, infectious, occupational, prevention, research | has parent organization: Centers for Disease Control and Prevention | nif-0000-10186 | SCR_006462 | SciCrunch Registry | Genomics | 2026-10-24 12:45:44 | 885 | |||||||||
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ProSpec Resource Report Resource Website 1000+ mentions |
ProSpec (RRID:SCR_006584) | commercial organization | An Antibody supplier | nlx_152436 | SCR_006584 | SciCrunch Registry | 2026-10-24 12:45:47 | 1252 | ||||||||||||
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Bloomington Drosophila Stock Center Resource Report Resource Website 1000+ mentions |
Bloomington Drosophila Stock Center (RRID:SCR_006457) | BDSC | biomaterial supply resource, material resource, organism supplier | Collects, maintains and distributes Drosophila melanogaster strains for research. Emphasis is placed on genetic tools that are useful to a broad range of investigations. These include basic stocks of flies used in genetic analysis such as marker, balancer, mapping, and transposon-tagging strains; mutant alleles of identified genes, including a large set of transposable element insertion alleles; defined sets of deficiencies and a variety of other chromosomal aberrations; engineered lines for somatic and germline clonal analysis; GAL4 and UAS lines for targeted gene expression; enhancer trap and lacZ-reporter strains with defined expression patterns for marking tissues; and a collection of transposon-induced lethal mutations. | RIN, Resource Information Network, disease model, deficiency, deletion, transposon insertion, sequenced strain, duplication, protein trap, human disease model, transposon, fly, gene, genetic, genetic analysis, database, deficiency, germline, insertion, invertebrate, scientist, somatic, stock, transposon, mutation, genetic construct, FASEB list, RRID Community Authority |
is used by: Integrated Animals is listed by: One Mind Biospecimen Bank Listing is listed by: Resource Information Network is related to: One Mind Biospecimen Bank Listing is related to: NIF Data Federation has parent organization: Indiana University; Indiana; USA |
Human disease model | OD P40 OD018537 | nif-0000-00241 | https://orip.nih.gov/comparative-medicine/programs/invertebrate-models | http://flystocks.bio.indiana.edu/bloomhome.htm | SCR_006457 | SciCrunch Registry | Bloomington Drosophila Stock Center at Indiana University | 2026-10-24 12:45:45 | 3419 | ||||
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Anxiety Disorders Association of America Resource Report Resource Website 1+ mentions |
Anxiety Disorders Association of America (RRID:SCR_006578) | ADAA | data or information resource, disease-related portal, funding resource, patient-support portal, portal, topical portal | The Anxiety Disorders Association of America (ADAA) is a national nonprofit organization dedicated to the prevention, treatment, and cure of anxiety disorders and to improving the lives of all people who suffer from them. It is the leader in education, training, and research for anxiety and stress-related disorders. ADAA leads the way, improving the lives of millions of people: * Promotes professional and public awareness of anxiety and related disorders and their impact on people''s lives. * Encourages the advancement of scientific knowledge about causes and treatment of anxiety and related disorders. * Links people who need treatment with the health care professionals who provide it. * Helps people find appropriate treatment and develop self-help skills. * Works to reduce the stigma surrounding anxiety and related disorders. ADAA was founded in 1980 as the Phobia Society of America by a diverse group of clinicians and patients. The term anxiety disorder had not yet been coined. Most anxiety disorders were simply called phobias. That changed as researchers discovered links between panic attacks and abnormal blood flow in the brain, learned that anxiety disorders are associated with pervasive social and health consequences, and discovered and tested various therapies and medications to treat anxiety disorders. ADAA adopted its new name in 1990 to reflect the changing and growing field. Over the years ADAA has launched several national educational campaigns to promote awareness about anxiety disorders and encourage people to seek treatment. ADAA has also funded more than $1.5 million in anxiety disorder research. Today ADAA continues to be the voice for those affected by anxiety and anxiety-related disorders. The organization is frequently cited by the media and also provides information and treatment referrals to tens of thousands each year by phone, e-mail, and through this website. | anxiety, anxiety disorder, phobia, human, phobic disorder, one mind ptsd | nlx_143825 | SCR_006578 | SciCrunch Registry | Phobia Society of America | 2026-10-24 12:45:47 | 3 | |||||||||
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Jalview Resource Report Resource Website 1000+ mentions |
Jalview (RRID:SCR_006459) | Jalview | software resource | A free program for multiple sequence alignment editing, visualisation and analysis that is available in two forms: a lightweight Java applet for use in web applications, and a powerful desktop application that employs web services for sequence alignment, secondary structure prediction and the retrieval of alignments, sequences, annotation and structures from public databases and any DAS 1.53 compliant sequence or annotation server. Use it to view and edit sequence alignments, analyse them with phylogenetic trees and principal components analysis (PCA) plots and explore molecular structures and annotation. Jalview has built in DNA, RNA and protein sequence and structure visualisation and analysis capabilities. It uses Jmol to view 3D structures, and VARNA to display RNA secondary structure. | edit, analysis, annotation, multiple sequence alignment, wysiwyg, bio.tools, FASEB list |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools is listed by: SoftCite has parent organization: University of Dundee; Scotland; United Kingdom |
BBSRC BBSB16542 | PMID:19151095 DOI:10.1093/bioinformatics/btp033 |
GNU General Public License, v3, Acknowledgement requested | OMICS_00885, biotools:Jalview | https://bio.tools/Jalview, https://sources.debian.org/src/jalview/ | SCR_006459 | SciCrunch Registry | 2026-10-24 12:45:43 | 4136 | |||||
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Science Podcast Resource Report Resource Website |
Science Podcast (RRID:SCR_006453) | Science Podcast | data or information resource, narrative resource, podcast | The Science Podcast takes you on a tour of some interesting stories in the journal and online. * MP3 of this show * Transcript of this show * Subscribe to the Science Podcast RSS Feed |
is used by: NIF Data Federation is related to: Integrated Podcasts |
nlx_36122 | SCR_006453 | SciCrunch Registry | Science Podcasts | 2026-10-24 12:45:43 | 0 | |||||||||
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Yeungnam University; North Gyeongsang; South Korea Resource Report Resource Website 1+ mentions |
Yeungnam University; North Gyeongsang; South Korea (RRID:SCR_006575) | university | Private research university located in Gyeongsan, North Gyeongsang, South Korea. University includes colleges of Law and Medicine and teaching hospital. | is parent organization of: Death Domain database | nlx_149484 | http://www.yu.ac.kr/_under/index.html | SCR_006575 | SciCrunch Registry | Yeungnam University | 2026-10-24 12:45:47 | 1 | |||||||||
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NINDS Common Data Elements Resource Report Resource Website 10+ mentions |
NINDS Common Data Elements (RRID:SCR_006577) | NINDS CDEs | data or information resource, database, narrative resource, standard specification | The purpose of the NINDS Common Data Elements (CDEs) Project is to standardize the collection of investigational data in order to facilitate comparison of results across studies and more effectively aggregate information into significant metadata results. The goal of the National Institute of Neurological Disorders and Stroke (NINDS) CDE Project specifically is to develop data standards for clinical research within the neurological community. Central to this Project is the creation of common definitions and data sets so that information (data) is consistently captured and recorded across studies. To harmonize data collected from clinical studies, the NINDS Office of Clinical Research is spearheading the effort to develop CDEs in neuroscience. This Web site outlines these data standards and provides accompanying tools to help investigators and research teams collect and record standardized clinical data. The Institute still encourages creativity and uniqueness by allowing investigators to independently identify and add their own critical variables. The CDEs have been identified through review of the documentation of numerous studies funded by NINDS, review of the literature and regulatory requirements, and review of other Institute''s common data efforts. Other data standards such as those of the Clinical Data Interchange Standards Consortium (CDISC), the Clinical Data Acquisition Standards Harmonization (CDASH) Initiative, ClinicalTrials.gov, the NINDS Genetics Repository, and the NIH Roadmap efforts have also been followed to ensure that the NINDS CDEs are comprehensive and as compatible as possible with those standards. CDEs now available: * General (CDEs that cross diseases) Updated Feb. 2011! * Congenital Muscular Dystrophy * Epilepsy (Updated Sept 2011) * Friedreich''s Ataxia * Parkinson''s Disease * Spinal Cord Injury * Stroke * Traumatic Brain Injury CDEs in development: * Amyotrophic Lateral Sclerosis (Public review Sept 15 through Nov 15) * Frontotemporal Dementia * Headache * Huntington''s Disease * Multiple Sclerosis * Neuromuscular Diseases ** Adult and pediatric working groups are being finalized and these groups will focus on: Duchenne Muscular Dystrophy, Facioscapulohumeral Muscular Dystrophy, Myasthenia Gravis, Myotonic Dystrophy, and Spinal Muscular Atrophy The following tools are available through this portal: * CDE Catalog - includes the universe of all CDEs. Users are able to search the full universe to isolate a subset of the CDEs (e.g., all stroke-specific CDEs, all pediatric epilepsy CDEs, etc.) and download details about those CDEs. * CRF Library - (a.k.a., Library of Case Report Form Modules and Guidelines) contains all the CRF Modules that have been created through the NINDS CDE Project as well as various guideline documents. Users are able to search the library to find CRF Modules and Guidelines of interest. * Form Builder - enables users to start the process of assembling a CRF or form by allowing them to choose the CDEs they would like to include on the form. This tool is intended to assist data managers and database developers to create data dictionaries for their study forms. | common data element, neuroscience, clinical, human, adult, pediatric, disease, disorder, data standard | has parent organization: National Institute of Neurological Disorders and Stroke | NINDS contract N01-NS-7-2372 | PMID:20583225 | nif-0000-10000 | SCR_006577 | SciCrunch Registry | National Institute of Neurological Disorders and Stroke CDEs, NINDS NINDS Common Data Elements: Harmonizing information. Streamlining research. | 2026-10-24 12:45:45 | 32 | ||||||
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Common Fund Protein Capture Reagents Resource Report Resource Website 1+ mentions |
Common Fund Protein Capture Reagents (RRID:SCR_006570) | Protein Capture Reagents | data or information resource, funding resource, portal, topical portal | Program that is developing new resources and tools to understand the critical role the multitude of cellular proteins play in normal development and health as well as in disease. These resources will support a wide-range of research and clinical applications that will enable the isolation and tracking of proteins of interest and permit their use as diagnostic biomarkers of disease onset and progression. The program is being implemented in phases, with three Funding Opportunity Announcements (FOAs): * FOA 1: Antigen Production (RFA-RM-10-007) To produce human transcription factor antigens for making monoclonal antibodies or other affinity capture reagents; this effort is already underway. * FOA 2: Anti-Transcription Factor Antibodies Production (RFA-RM-10-017) To optimize and scale anti-transcription factor capture reagent production to develop a community antibody resource. * FOA 3: New Reagent Technology Development and Piloting (RFA-RM-10-018) To develop improvements in the reagent production pipeline with regard to quality, utility, cost, and production scalability. To understand what makes a cell function normally and what may go awry in disease, we need better tools and resources, such as renewable protein capture reagents and probes, to study how proteins work in isolation and how they interact with other proteins, carbohydrates, or DNA regions within a cell. Ideally, this resource would allow us to identify and isolate all proteins within cells, in their various forms the so called proteome to ensure broad application in research and clinical studies aimed at understanding, preventing, detecting and treating disease. Existing protein capture reagents, such monoclonal antibodies, have been developed for a number of protein targets, although these represent only a subset of all proteins comprising the human proteome. In addition, many monoclonal antibodies lack the desired level of specificity and do not reliably target only the protein of interest. This is particularly problematic given the multiple forms of any one protein and the broad range of protein types in the body. The Protein Capture Reagents Program is organized as a pilot program using transcription factors as a test case to examine the feasibility and value of generating a community resource of low cost, renewable affinity reagents for all human proteins. The reagents must be specifically designed for high quality and broad experimental utility in order to meet the growing demands of biomedical researchers. Based on what is learned from these funding initiatives, the program may expand to a larger production effort to provide a broad community resource of human protein capture reagents. | protein, reagent, proteome, antigen, anti-transcription factor, antibody, protein capture, transcription factor | has parent organization: NIH Common Fund | nlx_151642 | https://proteincapture.org, https://proteincapture.org/reagent_portal/ | SCR_006570 | SciCrunch Registry | Protein Capture Reagents Program, NIH Common Fund Protein Capture Reagents Program, Common Fund Protein Capture Reagents Program | 2026-10-24 12:45:45 | 2 | |||||||
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Autoimmune Lymphoproliferative Syndrome Information Resource Report Resource Website 1+ mentions |
Autoimmune Lymphoproliferative Syndrome Information (RRID:SCR_006451) | NIAID ALPS | data or information resource, disease-related portal, portal, topical portal | A disease-related portal about Autoimmune Lymphoproliferative Syndrome (ALPS) including research in the following categories: Medical and Genetic Description, Database of Mutations, Database of ALPS-FAS Mutations, and Molecular Pathways. Autoimmune Lymphoproliferative Syndrome (ALPS) is a recently recognized disease in which a genetic defect in programmed cell death, or apoptosis, leads to breakdown of lymphocyte homeostasis and normal immunologic tolerance. It is an inherited disorder of the immune system that affects both children and adults. In ALPS, unusually high numbers of white blood cells called lymphocytes accumulate in the lymph nodes, liver, and spleen, which can lead to enlargement of these organs. Database of Mutations * All existing ALPS-FAS mutations (NIH Web site) * ALPS-FAS * ALPS Type Ia (most common type) ** Reported FAS (TNFRSF6) mutations causing ALPS ** Distribution of FAS (TNFRSF6) mutations ** FAS (TNFRSF6) polymorphisms * ALPS Type II | apoptosis, autoimmune lymphoproliferative syndrome, double negative t cell, lymphocyte, pathway, immune system, clinical trial, child, adult, mutation | Autoimmune Lymphoproliferative Syndrome | NIAID | nif-0000-02542 | http://research.nhgri.nih.gov/ALPS/ | SCR_006451 | SciCrunch Registry | NIAID Autoimmune Lymphoproliferative Syndrome (ALPS), NIAID Autoimmune Lymphoproliferative Syndrome, ALPSbase, Autoimmune Lymphoproliferative Syndrome (ALPS) | 2026-10-24 12:45:44 | 1 | ||||||
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Transverse Myelitis Association Resource Report Resource Website 1+ mentions |
Transverse Myelitis Association (RRID:SCR_006523) | TMA | data or information resource, disease-related portal, meeting resource, patient-support portal, portal, topical portal, training resource | The Transverse Myelitis Association was established in 1994 as an organization dedicated to advocacy for those who have these rare neuroimmunologic diseases. It was incorporated as a not-for-profit organization in 1996. It facilitates support and networking opportunities amongst families; provides educational information; functions as a clearinghouse for articles and research literature; and investigates, advocates for and supports research and innovative treatment efforts. Transverse Myelitis is a rare neurological disorder that is part of a spectrum of neuroimmunologic diseases of the central nervous system. Other disorders in this spectrum include, Acute Disseminated Encephalomyelitis (ADEM), Optic Neuritis, and Neuromyelitis Optica (Devic''s disease). The membership of The Transverse Myelitis Association includes persons with all of these disorders, their family members and caregivers and the medical professionals who treat people with these disorders. The TMA publishes a newsletter for our members twice a year, which contains articles by physicians and health care providers. There are also articles written by people with the rare neuroimmunologic disorders. A membership directory is published and distributed annually. The TMA assists in the development of local support groups and is involved in various fund-raising efforts, such as Reading for Rachel, to raise awareness and funds for research. The TMA supports and conducts various symposiums and workshops involving both professionals and patients for the exchange of information regarding research and treatment strategies for persons with the rare neuroimmunologic disorders of the central nervous system. | nlx_69007 | SCR_006523 | SciCrunch Registry | 2026-10-24 12:45:46 | 1 | |||||||||||
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SRAdb Resource Report Resource Website 10+ mentions |
SRAdb (RRID:SCR_006524) | SRAdb | software resource | Software package to make access to the compilation of metadata from NCBI SRA and tools associated with submission, study, sample, experiment and run much more feasible. This is accomplished by parsing all the NCBI SRA metadata into a SQLite database that can be stored and queried locally. Fulltext search in the package make querying metadata very flexible and powerful. fastq and sra files can be downloaded for doing alignment locally. Beside ftp protocol, the SRAdb has funcitons supporting fastp protocol (ascp from Aspera Connect) for faster downloading large data files over long distance. The SQLite database is updated regularly as new data is added to SRA and can be downloaded at will for the most up-to-date metadata. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools is related to: NCBI Sequence Read Archive (SRA) has parent organization: Bioconductor |
PMID:23323543 | Artistic License, v2 | biotools:sradb, OMICS_01032 | https://bio.tools/sradb | SCR_006524 | SciCrunch Registry | SRAdb - A compilation of metadata from NCBI SRA and tools | 2026-10-24 12:45:46 | 18 | |||||
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seq crumbs Resource Report Resource Website 1+ mentions |
seq crumbs (RRID:SCR_006486) | seq_crumbs | software resource | A collection of small sequence processing utilities that are modeled after the Unix command line text processing utilities so every utility tries to perform a specific task and most of them take a sequence file as input and create a new processed sequence file as output. This design encourages the assembly of the seq_crumbs utilities with Unix pipes to create complex pipelines. | is listed by: OMICtools | Mainly under the, GNU General Public License | OMICS_01075 | SCR_006486 | SciCrunch Registry | 2026-10-24 12:45:43 | 9 | |||||||||
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Plant Organelles Database Resource Report Resource Website 1+ mentions |
Plant Organelles Database (RRID:SCR_006520) | PODB, PODB2 | data or information resource, data repository, database, experimental protocol, image collection, narrative resource, service resource, storage service resource, video resource | Database of images, movies, and protocols to promote a comprehensive understanding of plant organelle dynamics, including organelle function, biogenesis, differentiation, movement, and interactions with other organelles. It consists of 5 individual parts, ''Perceptive Organelles Database'', ''The Organelles Movie Database'', ''The Organellome Database'', ''The Functional Analysis Database'', and ''External Links to other databases and Web pages''. All the data and protocols in ''The Organelle Movie Database'', ''The Organellome Database'' and ''The Functional Analysis Database'' are populated by direct submission of experimentally determined data from plant researchers. Your active contributions by submission of data and protocols to our database would also be appreciated. * Perceptive Organelles Database: This database contains images and movies of organelles in various tissues during different developmental stages in response to environmental stimuli. * Organelles Movie Database: This database contains time-lapse images, Z slices and projection images of organelles in various tissues during different developmental stages, visualized using fluorescent and non-fluorescent probes. * Organellome Database: This database contains images for cellular structures that are composed of organelle images in various tissues during different developmental stages, visualized with fluorescent and non-fluorescent probes. * Functional Analysis Database: This database is a collection of protocols for plant organelle research. * External Links: Access to biological databases. | organelle, developmental stage, environmental stimuli, development, environment, stimulus, biochemical assay, nucleic acid, protein, gene expression, genome mapping, histology, tissue isolation, organelle isolation, plant growth, maintenance, visualization, observation, plant organelle, movement, division, subcellular positioning, behavior, external stimuli, green fluorescent protein, biogenesis, differentiation, interaction |
is related to: Plant Organelles World has parent organization: National Institute for Basic Biology; Okazaki; Japan |
Japanese Ministry of Education Culture Sports Science and Technology MEXT 16085101; Japan Society for the Promotion of Science 228052 |
PMID:21115470 PMID:19755394 PMID:17932059 |
Free for scientific and educational use provided the contributor and the Organellome Database and the Organelles Movie Database are properly credited. If you wish to use commercially, Please contact the contributors of the corresponding images and movies for permission. | nlx_151998, r3d100011300 | https://doi.org/10.17616/R3933R | SCR_006520 | SciCrunch Registry | Plant Organelles Database 2 | 2026-10-24 12:45:46 | 7 | ||||
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MGI GO Browser Resource Report Resource Website 1+ mentions |
MGI GO Browser (RRID:SCR_006489) | MGI GO Browser | analysis service resource, data analysis service, data or information resource, database, production service resource, service resource | With the MGI GO Browser, you can search for a GO term and view all mouse genes annotated to the term or any subterms. You can also browse the ontologies to view relationships between terms, term definitions, as well as the number of mouse genes annotated to a given term and its subterms. The MGI GO browser directly accesses the GO data in the MGI database, which is updated nightly. Platform: Online tool | gene, ontology, browser, molecular function, biological process, cellular component, ontology or annotation browser, ontology or annotation search engine, ontology or annotation visualization |
is listed by: Gene Ontology Tools is related to: Gene Ontology has parent organization: Mouse Genome Informatics (MGI) |
Free for academic use | nlx_149104 | SCR_006489 | SciCrunch Registry | 2026-10-24 12:45:45 | 8 | ||||||||
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Pathpedia.com - Online pathology resource Resource Report Resource Website |
Pathpedia.com - Online pathology resource (RRID:SCR_006482) | book, community building portal, continuing medical education, data or information resource, database, job resource, meeting resource, narrative resource, portal, service resource, training resource, wiki | Pathpedia.com is web-based wiki on human anatomical, clinical, and experimental pathology created for pathologists. This collaborative portal includes news, education, jobs, meetings, forums and links. The Education tab includes access to journals, books, CME / SAM/ CMIL, WikiBooks, eAtlas, etc. The eAtlas module allows you post unusual and difficult pathology cases to be reviewed by other pathologists across the globe. This module may help in identifying previously unreported entities and unusual / variant examples of known entities. Categories include Histopathology, Gross pathology, Normal histology, Image quiz and Case sharing. Immunopedia - A clinically useful web-based database on the immunohistochemical and flow cytometric evaluation of neoplasms. 1. Large database 2. Regular updates 3. Quality citations 4. Exquisite modules *Data included for both neoplastic & non-neoplastic tissues/cells *Clones indicated wherever applicable along with their markers *References cited for each piece of data on markers or diseases *Option provided to merge data of discrete disease categories Online case sharing *Share unusual cases with pathology community *Help identify previously unreported entities *Get expert reviews and comments from your peers | nlx_22643 | SCR_006482 | SciCrunch Registry | Pathpedia, Pathpedia.com | 2026-10-24 12:45:43 | 0 | |||||||||||
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Xavier University of Louisiana; Louisiana; USA Resource Report Resource Website |
Xavier University of Louisiana; Louisiana; USA (RRID:SCR_006483) | XULA | university | A private, coeducational, liberal arts college with the distinction of being the only historically black Roman Catholic institution of higher education located in the Gert Town section of New Orleans, Louisiana, USA. |
is parent organization of: XULA Materials Research - Shared Instrumentation Facilities is parent organization of: LCRC Proteomics Core Facility is parent organization of: LCRC Biospecimen Core is parent organization of: LCRC Adult Stem Cell Core is parent organization of: LCRC Cell Analysis and Immunology Core Facility is parent organization of: LCRC Genomics Core Facility is parent organization of: LCRC Microarray Core is parent organization of: LCRC Morphology and Imaging Core is parent organization of: XULA Major Instrumentation Core is parent organization of: XULA Animal Care Facility is parent organization of: XULA Center for Nanomedicine and Drug Delivery is parent organization of: XULA RCMI Cell and Molecular Biology Core is parent organization of: XULA RCMI Molecular Structure and Modeling Core |
grid.268355.f, nlx_156107, Wikidata:Q390087, ISNI:0000 0000 9679 3586 | https://ror.org/0085d9t86 | SCR_006483 | SciCrunch Registry | Xavier University of Louisiana | 2026-10-24 12:45:45 | 0 | ||||||||
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Gene Ontology For Functional Analysis (GOFFA) Resource Report Resource Website 1+ mentions |
Gene Ontology For Functional Analysis (GOFFA) (RRID:SCR_006484) | GOFFA | data analysis software, data processing software, software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 23,2023. Software tool developed for ArrayTrack that takes a list of genes and identifies terms in Gene Ontology associated with those genes. GOFFA provides tools to view/access the following: GO term hierarchy, full listing of GO terms annotated with the genes associated with a given term, Fisher's exact test p-value providing the probability of identifying that many genes for a given term by chance alone, and relative enrichment factor (E-value) giving the enrichment of a GO term for genes in the submitted list relative to the frequency of genes assigned to that term from the full set of GOFFA annotated genes for a particular species. | gene ontology, proteomic, visualization, fisher's exact test, browser, search engine, term enrichment, text mining, ontology browser, annotation browser, ontology visualization, annotation visualization, database, data warehouse, software, identify term |
is used by: ArrayTrack is listed by: Gene Ontology Tools is related to: Gene Ontology has parent organization: National Center for Toxicological Research |
PMID:17118145 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_149101 | http://edkb.fda.gov/webstart/arraytrack/ | SCR_006484 | SciCrunch Registry | Gene Ontology For Functional Analysis | 2026-10-24 12:45:45 | 9 | |||||
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California Digital Library Resource Report Resource Website 1+ mentions |
California Digital Library (RRID:SCR_006481) | CDL | institution | One of the world''s largest digital research libraries that changed the ways that faculty, students, and researchers discover and access information using innovative technology to connect content and communities in ways that enhance teaching, learning, and research. In partnership with the UC libraries, the CDL has continually broken new ground by developing systems linking their users to the vast print and online collections within UC and beyond. Building on the foundations of the Melvyl Catalog, they developed one of the largest online library catalogs in the country. They saved the University millions of dollars by facilitating the co-investment and sharing of materials and services used by libraries across the UC system. They work in partnership with campuses to bring the treasures of their libraries, museums, and cultural heritage organizations to the world. And they continue to explore how services such as digital curation, scholarly publishing, archiving and preservation support research throughout the information lifecycle. | library, digital, collection, catalog |
uses: DataCite is listed by: DataCite has parent organization: University of California; California; USA is parent organization of: UC3 Merritt is parent organization of: DMPTool is parent organization of: eScholarship is parent organization of: EZID is parent organization of: DataUp |
, grid.463323.3, nlx_156041, Wikidata: Q5020447, ISNI: 0000 0001 1957 5136 | https://ror.org/03yrm5c26, https://api.datacite.org/dois?prefix=10.24343 | SCR_006481 | SciCrunch Registry | 2026-10-24 12:45:45 | 2 | ||||||||
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UNITE Resource Report Resource Website 1000+ mentions |
UNITE (RRID:SCR_006518) | UNITE | analysis service resource, data analysis service, data or information resource, data repository, database, production service resource, service resource, storage service resource | A fungal rDNA internal transcribed spacer (ITS) sequence database (although additional genes and genetic markers are also welcome) to facilitate identification of environmental samples of fungal DNA. Additional important features include user annotation of INSD sequences to add metadata on, e.g., locality, habitat, soil, climate, and interacting taxa. The user can furthermore annotate INSD sequences with additional species identifications that will appear in the results of any analyses done. UNITE focuses on high-quality ITS sequences generated from fruiting bodies collected and identified by experts and deposited in public herbaria. In addition, it also holds all fungal ITS sequences in the International Nucleotide Sequence Databases (INSD: NCBI, EMBL, DDBJ). Both sets of sequences may be used in any analyses carried out. UNITE is accompanied by a project management system called PlutoF, where users can store field data, document the sequencing lab procedures, manage sequences, and make analyses. PlutoF intends to make it possible for taxonomists, ecologists, and biogeographers to use a common platform for data storage, handling, and analyses, with the intent of facilitating an integration of these disciplines. A user can have an unlimited number of projects but still make analyses across any project data available to him. | sequence, barcoding sequence, internal transcribed spacer sequence, rdna, gene, genetic marker, internal transcribed spacer, dna, FASEB list |
has parent organization: University of Tartu; Tartu; Estonia has parent organization: University of Oslo; Oslo; Norway has parent organization: University of Gothenburg; Gothenburg; Sweden has parent organization: University of Lisbon; Lisbon; Portugal |
PMID:20409185 PMID:15869663 |
Creative Commons Attribution-ShareAlike License, v3 Unported, The community can contribute to this resource | nlx_61947, r3d100011316 | https://doi.org/10.17616/R37635 | http://unite.zbi.ee | SCR_006518 | SciCrunch Registry | unite: A molecular database for the identification of fungi | 2026-10-24 12:45:46 | 2291 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
Email: info_at_ dknet.org
