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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Science Alliance Resource Report Resource Website |
Science Alliance (RRID:SCR_023040) | nonprofit organization | Organization mission is to expand cooperative ventures in research with Oak Ridge National Laboratory and enhance science and engineering research programs at University of Tennessee. Organization is affiliated with Tennessee Center of Excellence. Funding resource. | Oak Ridge National Laboratory, science and engineering research programs, University of Tennessee, Tennessee Center of Excellence | https://utorii.com/research/science-alliance/ | SCR_023040 | 2026-08-15 11:27:27 | 0 | |||||||||||
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Society of Urodynamics, Female Pelvic Medicine and Urogenital Reconstruction (SUFU) Resource Report Resource Website |
Society of Urodynamics, Female Pelvic Medicine and Urogenital Reconstruction (SUFU) (RRID:SCR_022874) | nonprofit organization | Organization to optimize the care of women, men, and children with lower urinary tract dysfunction and/or pelvic floor disorders through education, research and involvement in health care policy. To improve the art and science of Urology through basic and applied clinical research in urodynamics and neurourology, voiding function and dysfunction, female urology and pelvic floor dysfunction, and to disseminate and teach these concepts. | lower urinary tract dysfunction, pelvic floor disorders, urodynamics and neurourology, female urology | is listed by: Collaborating for the Advancement of Interdisciplinary Research in Benign Urology | SCR_022874 | 2026-08-15 11:27:25 | 0 | |||||||||||
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Ultracut: E ultramicrotome Resource Report Resource Website 1+ mentions |
Ultracut: E ultramicrotome (RRID:SCR_022980) | instrument resource | Reichert Jung Ultracut E, article number 131-960, is used to cut ultrathin and semithin sections of resin embedded samples for electron microscopy. | USEDit, Instrument, Equipment, ultramicrotome, cut ultrathin and semithin sections, resin embedded samples, electron microscopy | is listed by: USEDit | SCR_022980 | 2026-08-15 11:27:26 | 1 | |||||||||||
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Bertin Technologies: Precellys 24 tissue homogenizer Resource Report Resource Website 1+ mentions |
Bertin Technologies: Precellys 24 tissue homogenizer (RRID:SCR_022979) | instrument resource | The Precellys 24 homogenizer with automatic tube locking system with the ability to process up to 24 tubes simultaneously., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | USEDit, Instrument, Equipment, Bertin Technologies, homogenizer, automatic tube locking system, | is listed by: USEDit | THIS RESOURCE IS NO LONGER IN SERVICE | Model_Number_Precellys_24 | SCR_022979 | Bertin Precellys 24 tissue homogenizer | 2026-08-15 11:27:28 | 5 | ||||||||
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iNSCOPIX: nVoke System Resource Report Resource Website 1+ mentions |
iNSCOPIX: nVoke System (RRID:SCR_023028) | instrument resource | Miniature microscope system that integrates in vivo cellular resolution calcium imaging with simultaneous or sequential optogenetic manipulation to causally link neural circuit activity with behavior. | Instrument, Equipment, USEDit, Inscopix, miniature microscope, in vivo cellular resolution, calcium imaging, optogenetic manipulation, link neural circuit activity with behavior, | is listed by: USEDit | Restricted | SCR_023028 | Inscopix nVoke System | 2026-08-15 11:27:27 | 4 | |||||||||
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Anne O'Tate Resource Report Resource Website 1+ mentions |
Anne O'Tate (RRID:SCR_023086) | web application, software resource | Web search tool to gain overview of set of articles retrieved by PubMed query. Used to support user driven summarization, drill down and browsing of PubMed search results. Value-added PubMed search engine for analysis and text mining. | Value added PubMed search engine, analysis and text mining | has parent organization: University of Illinois at Chicago; Illinois; USA | NLM LM 007292; NLM LM 08364 |
PMID:18279519 PMID:33684153 |
Free, Freely available | SCR_023086 | 2026-08-15 11:27:30 | 1 | ||||||||
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S-Risk Resource Report Resource Website |
S-Risk (RRID:SCR_023085) | web application, software resource | Web tool for assessing exposure and human health risks at contaminated sites. Fate and distribution of chemical pollutants in soil are calculated according to steady-state conservation of mass principles.Risks are calculated by comparing exposures with toxicological reference values and concentrations with toxicological or legal reference concentrations. | Chemical pollutants in soil, assessing exposure and human health risks, comparing exposures with toxicological reference values, . | Restricted | SCR_023085 | 2026-08-15 11:27:28 | 0 | |||||||||||
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GLAD Resource Report Resource Website 100+ mentions |
GLAD (RRID:SCR_001284) | GLAD | software resource | Software for analysis of array CGH data: detection of breakpoints in genomic profiles and assignment of a status (gain, normal or loss) to each chromosomal regions identified. | comparative genomic hybridization, breakpoint, copy number variation, microarray |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:15381628 | Free, Available for download, Freely available | OMICS_02053 | SCR_001284 | GLAD - Gain and Loss Analysis of DNA, Gain and Loss Analysis of DNA | 2026-08-15 11:27:28 | 292 | ||||||
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Bycom Resource Report Resource Website |
Bycom (RRID:SCR_000659) | software resource | A software which can perform methylcytosine calling from BS-seq (WGBS and RRBS), and permits either unmapped reads (FASTQ) or mapped reads (SAM/BAM) to be used as the input data. Certain SNPs (C>A/G) can also be selected in the output. | methylcytosine, bs-seq, fastq, sam, bam, snps, snp, wgbs, rrbs, sorftw |
is listed by: OMICtools has parent organization: SourceForge |
PMID:25255082 | Free, Available for download, Freely available | OMICS_00594 | SCR_000659 | 2026-08-15 11:27:30 | 0 | ||||||||
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OncoMerge Resource Report Resource Website 1+ mentions |
OncoMerge (RRID:SCR_023079) | software resource | Software tool to integrate somatic mutation types into comprehensive integrated somatic mutation matrix for downstream analyses.Somatic mutation integration platform that tames allelic heterogeneity, discovers causal mutations, integrates binary PAM and fusion with quantitative CNA data types, and overcomes known obstacles in cancer genetics. Used for systematic integration of protein affecting mutations, gene fusions, and copy number alterations into comprehensive somatic mutational profile. | integrate somatic mutation types, comprehensive integrated somatic mutation matrix, downstream analyses, protein affecting mutations, gene fusions, copy number alterations, systematic integration, comprehensive somatic mutational profile, | DOI:10.1101/2022.07.22.501139 | Free, Available for download, Freely available | SCR_023079 | 2026-08-15 11:27:28 | 1 | ||||||||||
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MS-DIAL Resource Report Resource Website 100+ mentions |
MS-DIAL (RRID:SCR_023076) | software resource | Software tool for data independent MS/MS deconvolution for comprehensive metabolome analysis. Universal program for untargeted metabolomics that supports multiple instruments (GC/MS, GC/MS/MS, LC/MS, and LC/MS/MS) and MS vendors (Agilent, Bruker, LECO, Sciex, Shimadzu, Thermo, and Waters). Used for untargeted metabolomics and lipidomics supporting any type of chromatography/mass spectrometry methods. | Data independent MS/MS deconvolution, metabolome analysis, untargeted metabolomics universal program, supports multiple instruments and MS vendors, untargeted metabolomics and lipidomics, chromatography, mass spectrometry | PMID:25938372 | Free, Available for download, Freely available | biotools:ms_dial | https://bio.tools/ms_dial, https://github.com/mtbinfo-team/mtbinfo.github.io, https://mtbinfo-team.github.io/mtbinfo.github.io/ | SCR_023076 | 2026-08-15 11:27:28 | 127 | ||||||||
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Online Application for Survival Analysis (OASIS) Resource Report Resource Website 10+ mentions |
Online Application for Survival Analysis (OASIS) (RRID:SCR_014450) | OASIS | web application, software resource | A tool for various statistical tasks involved in analyzing survival data which provides a uniform platform to facilitate efficient statistical analyses of survival data in the aging field. The statistical features of OASIS include the calculation of Kaplan-Meier estimates, mean/median lifespan, mortality rate, Mantel-Cox Log-Rank test, Fishers exact test, weighted Log-Rank test, Kolmogorov-Smirnov test and Neymans smooth test. Moreover, OASIS generates survival and mortality curves that can be easily exported and modified by using common graphic softwares. | statistical analysis system, web application, survival data, data analysis, aging | POSTECH BRI Grant ; National Core Research Center for Systems Bio-Dynamics 20090091509; World Class University program R31-2010-000-10100-0 |
PMID:21858155 | Source code is available, Acknowledgement required, Python must be installed | SCR_014450 | Online Application for Survival Analysis | 2026-08-15 11:27:31 | 12 | |||||||
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EvidenceFinder Resource Report Resource Website 1+ mentions |
EvidenceFinder (RRID:SCR_013764) | web application, software resource | A web application to assist in the identification of articles and research related to literature search terms. The search covers full text articles in the Europe PMC repository. Relevant papers are suggested to users based on the scientific term searched and the selection of questions, generated by the application, relevant to term searched. | web application, software resource, literature search, bio.tools |
is used by: Europe PubMed Central is listed by: Connected Researchers is listed by: Debian is listed by: bio.tools is related to: Connected Researchers is related to: Europe PubMed Central has parent organization: Europe PubMed Central |
Wellcome Trust 098231 | DOI:10.1093/nar/gku1061 | Free, Public | biotools:evidence_finder | https://bio.tools/evidence_finder | SCR_013764 | 2026-08-15 11:27:27 | 3 | ||||||
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SignalP Resource Report Resource Website 10000+ mentions |
SignalP (RRID:SCR_015644) | web application, software resource | Web application for prediction of the presence and location of signal peptide cleavage sites in amino acid sequences from different organisms. The method incorporates a prediction of cleavage sites and a signal peptide/non-signal peptide prediction based on a combination of several artificial neural networks. | prediction, signal peptide, cleavage site, amino acid, sequence, artificial neural network |
is listed by: SoftCite has parent organization: DTU Center for Biological Sequence Analysis |
PMID:28451972 | Freely available, Acknowledgment requested, Free, Available for download, Runs on Windows, Runs on Mac OS | SCR_015644 | 2026-08-15 11:27:29 | 10033 | |||||||||
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DynaMine Resource Report Resource Website 10+ mentions |
DynaMine (RRID:SCR_014559) | web application, software resource | An NMR based method for protein folding prediction. Users can enter a UniProt identifier, FASTA sequences, or upload a file containing FASTA sequences and results are returned., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | nmr, protein folding, prediction, fasta, sequence, dynamics | PMID:24225580 | THIS RESOURCE IS NO LONGER IN SERVICE | http://dynamine.ibsquare.be | SCR_014559 | 2026-08-15 11:27:27 | 44 | |||||||||
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3Omics Resource Report Resource Website 1+ mentions |
3Omics (RRID:SCR_014678) | web application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented October 19, 2016. A web tool for visualizing and integrating multiple inter- or intra-transcriptomic, proteomic, and metabolomic human data. 3Omics generates inter-omic correlation networks to visualize relationships in data with respect to time or experimental conditions for transcripts, proteins and metabolites. | metabolomics, metabolomics tool, transcriptomics, proteomics, inter-omic, correlation, network, relationship visualization | is listed by: Metabolomics Workbench | PMID:23875761 | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_014678 | 2026-08-15 11:27:31 | 1 | |||||||||
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Wyatt: microOptilab Refractometer Resource Report Resource Website |
Wyatt: microOptilab Refractometer (RRID:SCR_020891) | instrument resource | Refractive Index detector that offers high sensitivity and 50 times dynamic range of every other UHPLC RI detector. Like Optilab, it offers temperature control both above and below ambient, as well as measurement of absolute refractive index of solvents. | Wyatt, Refractometer, Resource Equipement, Equipment, USEDit, | Commercially available | Model_Number_microOptilab | SCR_020891 | 2026-08-15 11:26:47 | 0 | ||||||||||
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Wyatt: Eclipse DualTec Field-Flow Fractionation system Resource Report Resource Website |
Wyatt: Eclipse DualTec Field-Flow Fractionation system (RRID:SCR_020892) | instrument resource | Field flow fractionation device supports both Hollow Fiber Flow FFF HF5 and Asymmetric Flow FFF AF4 in one instrument. Utilizing one HPLC stack and one set of Wyatt detectors, DualTec permits automated switching between any two of SEC, AF4 and HF5 separation followed by MALS and or DLS characterization. | Wyatt, Field-Flow Fractionation Equipment, USEDit, | Commercially available | Model_Number_Eclipse | SCR_020892 | 2026-08-15 11:26:48 | 0 | ||||||||||
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Wyatt: Calypso Composition-Gradient Multi-Angle Light Scattering (CG-MALS) Resource Report Resource Website |
Wyatt: Calypso Composition-Gradient Multi-Angle Light Scattering (CG-MALS) (RRID:SCR_020887) | instrument resource | Composition-Gradient Multi-Angle Light Scattering machine that characterizes biomolecular interactions, label free and immobolization free. It is able to determine equilibrium dissociation constants self and hhetero association as well as more complex interactions. | Wyatt, Composition-Gradient Multi-Angle Light Scattering Equipment, USEDit, | Commercially available | Model_Number_Calypso | SCR_020887 | 2026-08-15 11:26:48 | 0 | ||||||||||
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Waters: Xevo G2 Mass Spectrometer Resource Report Resource Website 1+ mentions |
Waters: Xevo G2 Mass Spectrometer (RRID:SCR_020885) | instrument resource | Mass spectrometer with selectivity, in-spectrum dynamic range, speed of analysis, quantitative accuracy and exact mass performance simultaneously, for any UPLC/MS or UPLC/MSE experiment. | Waters, Mass Spectrometer, Instrument Equipment, USEDit | Commercially available | Model_Number_Xevo G2 | SCR_020885 | 2026-08-15 11:26:38 | 1 |
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