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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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ATR; Kyoto; Japan Resource Report Resource Website 1+ mentions |
ATR; Kyoto; Japan (RRID:SCR_011102) | ATR | institution | ATR is a unique private Company established in Kansai region March 1986through the broad support of industrygovernment and academiawith the aim of promoting fundamental and innovative RD activities as well as contributing to society in a wide range of telecommunication fields For the last quarter century since our foundation outstanding research outcomes have been steadily achieved in such fields as neuro/knowledge science intelligent roboticslanguage translation and wireless communication through original and innovative research activities and collaboration work with various universities research institutesand companies within and outside of Japan. Research and development for information and communication technology is indispensable to the formation of safe and secure society as well as a true communication societywhich will provide people with a more satisfying living environment by facilitating human communicationIn addition to continuous efforts in highquality advanced research and developmentwe are determined to focus on the feasibility of broadly applying our research results in society and making them more useful and accessible to a variety of people New Mission * To promote pioneering and innovative research on information and communication-related fields with global collaboration among industry, academia and government * To contribute to a wide variety of welfare of society and humanity by outstanding achievements, and to develop highly-professional human resources * To lead growth of Kansai Science City as a center of excellence in the world |
is parent organization of: BrainLiner is parent organization of: Matlab Neuroshare Library is parent organization of: Brain Decoder Toolbox |
grid.418163.9, ISNI: 0000 0001 2291 1583, nlx_24867 | https://ror.org/01pe1d703 | SCR_011102 | ATR - Advanced Telecommunications Research Institute International, ATR: Advanced Telecommunications Research Institute International, Advanced Telecommunications Research Institute International | 2026-08-15 11:24:19 | 3 | ||||||||
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Babraham Institute Resource Report Resource Website 1+ mentions |
Babraham Institute (RRID:SCR_011106) | Babraham | institution | Life sciences Institute within University of Cambridge, England. Focuses on the BBSRC strategic objective of research into healthy ageing by understanding basic molecular processes. Benefits from provision of core facilities like imaging, flow cytometry, next generation sequencing, mass spectrometry and small animal facilities. Has tradition of sustained innovation in areas of lipid and calcium signalling, in immunology and in genetics. |
is related to: AgedBrainSYSBIO is related to: University of Cambridge; Cambridge; United Kingdom is parent organization of: FastQ Screen is parent organization of: Sherman is parent organization of: SeqMonk is parent organization of: ChIPMonk is parent organization of: FastQC is parent organization of: HiCUP is parent organization of: Bismark is parent organization of: Babraham Institute Labs and Facilities is parent organization of: Babraham Technology Development Laboratory is parent organization of: Babraham Sierra is parent organization of: Trim Galore is parent organization of: Babraham Institute Enterprise Limited is parent organization of: CHiCAGO is parent organization of: Babraham Institute Babraham Bioinformatics Core Facility |
Wikidata: Q4838012, nlx_157302, ISNI: 0000 0001 0694 2777, grid.418195.0 | https://ror.org/01d5qpn59 | SCR_011106 | The Babraham Institute - Life Sciences Research for Lifelong Health, The Babraham Institute | 2026-08-15 11:24:15 | 5 | ||||||||
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Bradley University; Illinois; USA Resource Report Resource Website |
Bradley University; Illinois; USA (RRID:SCR_011109) | Bradley | university | Founded by Lydia Moss Bradley in 1897, Bradley University is a private, independent university offering undergraduate, graduate, and continuing education programs in the liberal and fine arts, the sciences, business administration, communications, education, engineering, and the health sciences. Our residential campus of 6,000 students blends large school opportunities with a small school personality where there is a commitment to excellent teaching and personal attention to students. Bradley''s comprehensive programs offer an effective integration of liberal education, professional preparation, and personal and social development. | is parent organization of: TGD | grid.253259.a, Wikidata:Q897052, Crossref funder ID:100008195, ISNI:0000 0001 2183 4598, nlx_59810 | https://ror.org/04kmeaw70 | SCR_011109 | Bradley University | 2026-08-15 11:24:15 | 0 | ||||||||
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Bar-Ilan University; Ramat Gan; Isreal Resource Report Resource Website |
Bar-Ilan University; Ramat Gan; Isreal (RRID:SCR_011111) | BIU | university | Public research university in the city of Ramat Gan the Tel Aviv District, Israel. Established in 1955, Bar Ilan is Israel's second-largest academic institution. | is related to: NEWMEDS | nlx_158359, ISNI:0000 0004 1937 0503, grid.22098.31, Wikidata:Q1124657, Crossref funder ID:501100002744 | https://ror.org/03kgsv495 | SCR_011111 | Universitat Bar-Ilan, Bar-Ilan University | 2026-08-15 11:24:06 | 0 | ||||||||
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Beijing Normal University; Beijing; China Resource Report Resource Website 1+ mentions |
Beijing Normal University; Beijing; China (RRID:SCR_011079) | BNU | university | Colloquially known as Beishida, is a public research university located in Beijing, China, with a strong emphasis on basic disciplines of the humanities and sciences. |
is parent organization of: Beijing: Eyes Open Eyes Closed Study is parent organization of: DPARSF is parent organization of: PANDA is parent organization of: Beijing: Short TR Study is parent organization of: REST: a toolkit for resting-state fMRI is parent organization of: Functional Connectivity Analysis Tool for near-infrared spectroscopy data |
grid.20513.35, nlx_152811, Crossref funder ID:501100002726, ISNI:0000 0004 1789 9964, Wikidata:Q1604022 | https://ror.org/022k4wk35 | SCR_011079 | Beijing Normal University | 2026-08-15 11:24:14 | 1 | ||||||||
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Battelle Memorial Institute; Ohio; USA Resource Report Resource Website 1+ mentions |
Battelle Memorial Institute; Ohio; USA (RRID:SCR_011112) | Battelle | institution | A private nonprofit applied science and technology development company that conducts research and development, designs and manufactures products, and delivers critical services for government and commercial customers. It serves the national security, health and life sciences, and energy and environmental industries. | grid.471129.8, nlx_158079 | https://ror.org/05vqnxk73 | SCR_011112 | Battelle Memorial Institute | 2026-08-15 11:24:15 | 1 | |||||||||
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Hawkeye Resource Report Resource Website 1+ mentions |
Hawkeye (RRID:SCR_010982) | Hawkeye | software resource | A visual analytics tool for genome assembly analysis and validation, designed to aid in identifying and correcting assembly errors. |
is listed by: OMICtools has parent organization: SourceForge |
OMICS_00884 | SCR_010982 | 2026-08-15 11:24:04 | 9 | ||||||||||
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Murdoch University; Perth; Australia Resource Report Resource Website 1+ mentions |
Murdoch University; Perth; Australia (RRID:SCR_011037) | university | Public university in Perth, Western Australia, with campuses also in Singapore and Dubai. It began operations as the state's second university on 25 July 1973, and accepted its first undergraduate students in 1975. |
is parent organization of: Yabi is parent organization of: Western Australian State Agricultural Biotechnology Centre |
ISNI:0000 0004 0436 6763, grid.1025.6, Wikidata:Q1375146, nlx_11001, Crossref funder ID:501100001799 | https://ror.org/00r4sry34 | SCR_011037 | 2026-08-15 11:24:14 | 2 | ||||||||||
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Myongji University; Gyeonggi-do; South Korea Resource Report Resource Website |
Myongji University; Gyeonggi-do; South Korea (RRID:SCR_011038) | Myongji, Myong Ji | university | Myongji University is private, Christian university founded in 1948 in South Korea. Provides higher education in fields of engineering, sciences and humanities. | is parent organization of: Death Domain database | nlx_149483 | http://new.mju.ac.kr/eng/index.jsp | SCR_011038 | University of Myongji, Myongji University, Myong Ji University | 2026-08-15 11:24:18 | 0 | ||||||||
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KSF Labs Resource Report Resource Website |
KSF Labs (RRID:SCR_010987) | KSF Labs | service resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on February 3rd, 2022. KSF Labs is the virtual/real workshop(s). | is listed by: ScienceExchange | THIS RESOURCE IS NO LONGER IN SERVICE | SciEx_9073 | SCR_010987 | 2026-08-15 11:24:17 | 0 | |||||||||
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Laragen Resource Report Resource Website 50+ mentions |
Laragen (RRID:SCR_010989) | commercial organization | Founded in 1995 with intention of making DNA sequencing and genotyping laboratory to provide DNA sequencing and genotyping services for academic institutions or for private companies. | is listed by: ScienceExchange | SciEx_9090 | http://www.scienceexchange.com/facilities/laragen | SCR_010989 | Laragen, Inc | 2026-08-15 11:24:13 | 84 | |||||||||
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Stamford Bioprocess Technologies Resource Report Resource Website |
Stamford Bioprocess Technologies (RRID:SCR_010992) | Stamford Bioprocess Technologies | commercial organization | Located in Southern California, USA, Stamford Bioprocess Technologies provides bioprocess and related services for recombinant protein production. | is listed by: ScienceExchange | SciEx_9116 | http://www.scienceexchange.com/facilities/stamford-bioprocess-technologies | SCR_010992 | 2026-08-15 11:24:14 | 0 | |||||||||
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Spiral Genetics Incorporated Resource Report Resource Website |
Spiral Genetics Incorporated (RRID:SCR_011048) | Spiral Genetics Inc., | commercial organization | Core facility which provides assistance in statistical analyses as well as in organization. Core facility offers two main analysis programs titled Spiral Genetics' BioGraph and Structural Variant Analysis., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | Population Analysis, Structural Variant Analysis |
is listed by: ScienceExchange is parent organization of: Anchored Assembly |
THIS RESOURCE IS NO LONGER IN SERVICE | SciEx_9754 | http://www.scienceexchange.com/facilities/spiral-genetics-inc | SCR_011048 | , Spiral Genetics Inc., Spiral Genetics | 2026-08-15 11:24:05 | 0 | ||||||
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GE: Amersham Imager 600 Resource Report Resource Website 1+ mentions |
GE: Amersham Imager 600 (RRID:SCR_021853) | instrument resource | Amersham Imager 600 is CCD camera system that produces digitial images of samples in gels or membranes in three different modes: chemiluminescence, colorimetric and fluorescent image capture. Provides imaging system to capture and analyze protein and DNA sample gels and membranes in high resolution. | USEDit, chemiluminescence, colorimetric, fluorescent, image capture, digitial images | is listed by: USEDit | Commercially available | https://photos.labwrench.com/equipmentManuals/19468-6742.pdf | SCR_021853 | GE Healthcare Amersham Imager 600, Amersham Imager 600 | 2026-08-15 11:26:56 | 9 | ||||||||
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BorutaShap Resource Report Resource Website 1+ mentions |
BorutaShap (RRID:SCR_021696) | software resource | Software tool as wrapper feature selection method which combines both Boruta feature selection algorithm with shapley values. | Wrapper feature selection method, Boruta feature selection algorithm, shapley values | Free, Available for download, Freely available | https://github.com/Ekeany/Boruta-Shap | SCR_021696 | 2026-08-15 11:27:01 | 7 | ||||||||||
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LightGBM Resource Report Resource Website 10+ mentions |
LightGBM (RRID:SCR_021697) | software resource | Software tool as gradient boosting framework that uses tree based learning algorithms. Designed to be distributed and efficient with advantages:Faster training speed and higher efficiency;Lower memory usage;Better accuracy;Support of parallel, distributed, and GPU learning;Capable of handling large scale data. | Gradient boosting framework | Free, Available for download, Freely available | https://github.com/Microsoft/LightGBM/blob/master/docs/index.rst | SCR_021697 | 2026-08-15 11:26:54 | 28 | ||||||||||
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pyxDamerauLevenshtein Resource Report Resource Website 1+ mentions |
pyxDamerauLevenshtein (RRID:SCR_021858) | software resource | Software tool implements Damerau-Levenshtein (DL) edit distance algorithm for Python in Cython for high performance. | Damerau-Levenshtein, edit distance algorithm | Free, Available for download, Freely available | SCR_021858 | 2026-08-15 11:26:56 | 1 | |||||||||||
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Phenex Resource Report Resource Website 1+ mentions |
Phenex (RRID:SCR_021748) | software resource | Software application for annotating character matrix files with ontology terms. Character states can be annotated using Entity-Quality syntax, where entity, quality, and possibly related entities are drawn from requisite ontologies. In addition, taxa (the rows of a character matrix) can be annotated with identifiers from taxonomy ontology. Phenex saves ontology annotations alongside original free text character matrix data using new NeXML format standard for evolutionary data. | phenotype, ontology, taxonomy ontology, taxa, ontology annotations, free text character matrix data, NeXML, evolutionary data | NSF DBI 0641025; NHGRI HG002659; NSF EF0423641 |
DOI:10.1371/journal.pone.0010500 | Free, Available for download, Freely available | https://github.com/phenoscape/Phenex/wiki#download--installation | SCR_021748 | 2026-08-15 11:26:55 | 1 | ||||||||
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NanoString: nCounter Analysis System Resource Report Resource Website 10+ mentions |
NanoString: nCounter Analysis System (RRID:SCR_021712) | nCounter | instrument resource | System includes hardware and software. Options include nCounter SPRINT,nCounter MAX or nCounter FLEX. Platform used for multiplex analysis of up to 800 RNA, DNA, or protein targets. System can be combined with GeoMx Digital Spatial Profiler (DSP) to enable high-plex, spatially-resolved RNA, and protein quantification. | Multiplex analysis, RNA analysis, DNA analysis, Protein analysis, NanoString Differential Expression, NanoString, analysis system, instrument, equipment, USEDit, ABRF | is listed by: USEDit | Commercially available | SCR_021712 | nCounter Analysis System, Bruker nCounter Analysis System | 2026-08-15 11:27:00 | 36 | ||||||||
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YAML Resource Report Resource Website 10+ mentions |
YAML (RRID:SCR_021710) | software resource | YAML is a human friendly data serialization language for all programming languages. Unicode based data serialization language designed around common native data types of agile programming languages. Useful for programming needs ranging from configuration files to Internet messaging to object persistence to data auditing. | Data serialization language, common native data types, agile programming languages, configuration files, Internet messaging, object persistence, data auditing | Free, Freely available | https://yaml.org/spec/1.2.1/ | SCR_021710 | YAML 1.2 | 2026-08-15 11:26:54 | 23 |
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