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http://www.ucl.ac.uk/Pharmacology/dcpr95.html

These programs have been written over the last 20 years for analysis of our own results. They all do some things that are still not available in any commercial program. The programs are written in protected-mode 32-bit Fortran 90, with some assembler subroutines for fast graphics, and the Gino graphics library. Thus they are essentially DOS programs, though they are usually run from Windows, either via a desktop icon (the .ico files) or in the DOS box. The manuals (now in pdf format), have now all been collected into a single document, DCMANUALS.PDF, which should be downloaded, and the bits that you need can then be printed. Note that some sections are common to many or all programs, e.g. the notes on the graph and histogram drawing subroutines, and it is important to read this before using any of the programs (though there is a lot of online help (hit F1) for the graphics, and also in SCAN. Sponsor. Our work was supported by the Wellcome Trust (project grant 074491) and the Medical Research Council (programme grant G0400869).

Proper citation: DC Analysis programs (RRID:SCR_013431) Copy   

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http://graylab.jhu.edu/docking/rosetta/

Predicts the structure of a protein-protein complex from the individual structures of the monomer components.

Proper citation: RosettaDock (RRID:SCR_013393) Copy   

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http://arrayoligosel.sourceforge.net/

Software program to systematically design gene specific long oligonucleotide probes for entire genomes, for the purpose of developing whole genome microarrays. For each open reading frame, the program optimizes the oligo selection based upon several parameters, including uniqueness in the genome, sequence complexity, lack of self-binding, GC content and proximity to the 3''end of the gene.

Proper citation: ArrayOligoSelector (RRID:SCR_013494) Copy   

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http://www.eisenlab.org/eisen/?page_id=42

Software to graphically browse results of clustering and other analyses from Cluster.

Proper citation: TreeView (RRID:SCR_013503) Copy   

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http://www.eisenlab.org/eisen/?page_id=41

Software to process fluorescent images of microarrays.

Proper citation: ScanAlyze (RRID:SCR_013507) Copy   

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http://tiger.dbs.nus.edu.sg/cnv-seq/

A method for detecting DNA copy number variation (CNV) using high-throughput sequencing., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: CNV-seq (RRID:SCR_013357) Copy   

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http://www.broadinstitute.org/annotation/medea/

THIS RESOURCE IS NO LONGER IN SERVCE, documented June, 2019.Comparative Genomic Visualization with Adobe Flash.

Proper citation: MEDEA (RRID:SCR_013356) Copy   

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http://www.ccam.uchc.edu

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 26,2023. CCAM is one of five National Technology Centers for Networks and Pathways, NTCNP, funded throught the NIH Technology Center for Networks and Pathways, TCNP. CCAM integrates new microscope technologies for making quantitative in vivo live cell measurements with new physical formulations and computational tools that will produce spatially realistic quantitative models of intracellular dynamics. :The overarching rationale for CCAMs research as a TCNP is that polarity in networks and pathways is determined by the spatial organization, subcellular distribution, dynamic behavior, interactions and functions of specific molecules within the cell. To investigate these relationships, we use a tripartite approach described as: :1) Measure - develop new tools for measuring spatially resolved dynamic behavior of molecules in cells, :2) Model - develop new methods for spatial modeling of biological systems. :3) Manipulate - develop new techniques for manipulating the spatial distribution of molecules in living cells. :Microscopy contrast enhancement protocol, biophotonics, subcellular :

Proper citation: Center for Cell Analysis and Modeling (RRID:SCR_013656) Copy   

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http://www.funfaculty.org/

FUN is an international organization that is focused on neuroscience education and research at the undergraduate level. FUNs members and supporters include businesses and organizations; private liberal arts colleges, state and research university departments and programs; and individual faculty and students, all sharing a common interest in undergraduate neuroscience.

Proper citation: Faculty for Undergraduate Neuroscience (RRID:SCR_013536) Copy   

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http://ec.europa.eu/euraxess/links/index_en.htm

A networking tool for European researchers abroad. It provides information about research in Europe, European research policy, opportunities for research funding, for international collaboration and for trans-national mobility. Membership is free. :The objective of EURAXESS Links is a flourishing network of European researchers, scientists and scholars abroad. The network is already running in the USA since 2005 and has been launched in Japan in June 2008. The members of the network are informed about European Union research policies and made aware of career opportunities in Europe as well as opportunities for collaboration with Europe. The multidisciplinary network involves researchers at all stages of their careers and allows them to become well connected amongst themselves and in Europe, ensuring that they are recognised as an important resource for the European Research Area, whether they remain abroad or choose to return. :Through the success of the network, EURAXESS Links is intended to contribute to the improvement of Europe''s position in the global competition for talent, and the reinforcement of research collaboration. :EURAXESS Links focuses on three types of activity: networking of researchers, information dissemination and helping expatriate researchers to collaborate with colleagues in Europe or to return to rewarding careers in Europe. Membership of EURAXESS Links is free. :social networking; people resource :

Proper citation: EURAXESS Links (RRID:SCR_013660) Copy   

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http://www.accessdata.fda.gov/scripts/cder/ndc

Drug database published by the Food and Drug Administration of unique universal product identifiers for all drugs manufactured, prepared, propagated, compounded, or processed by it for commercial distribution.

Proper citation: National Drug Code Directory (RRID:SCR_013721) Copy   

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http://www.fda.gov/Drugs/InformationOnDrugs/ucm129662.htm

Database that contains drug products approved on the basis of safety and effectiveness by the Food and Drug Administration.

Proper citation: Approved Drug Products with Therapeutic Equivalence Evaluations (RRID:SCR_013727) Copy   

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http://scicurve.com

A software application that provides visual representations and organization for systematic literature searches. Users can observe trends in scientific literature through graphic visualizations while using keyword searches to find related articles or compare trends within a given graphic. SciCurve also allows users to locate journals which publish literature in users' fields of interest.

Proper citation: SciCurve (RRID:SCR_013778) Copy   

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https://www.zotero.org

A software application that allows users to add and store research content directly from the web. Users can use the tool to add research content and bibliographic references directly to their Zotero library from their browser. The application stores PDFs, images, audio and video files, and snapshots of web pages on a single searchable interface.

Proper citation: Zotero (RRID:SCR_013784) Copy   

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https://hp.acschemworx.acs.org

A web application which provides tools to share references and generate bibliographies with colleagues, organize and access references, and track metrics for ACS articles. Articles are automatically synced to user libraries and are accessible from multiple devices.

Proper citation: ACS ChemWorx (RRID:SCR_013785) Copy   

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http://www.ncbi.nlm.nih.gov/refseq/rsg/

A data set of defined genomic sequences used as reference standards for well-characterized genes. These standard nucleotide sequences serve as foundations for locating mutations, establishing conventions for numbering exons and introns, and defining the coordinates of other variations. Sequences are aligned to reference chromosomes. RefSeqGene is a subset of NCBI RefSeq.

Proper citation: RefSeqGene (RRID:SCR_013787) Copy   

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http://www.ncbi.nlm.nih.gov/genome/viruses/

A database which provides viral and viroid genome sequence data and resource tools. Al viral genomes are downloadable and a complete RefSeq release of viral and viroid genome sequences are available.

Proper citation: NCBI Viral Genomes (RRID:SCR_013789) Copy   

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http://neuroml-db.org

The NeuroML database is a curated relational database that provides for the storage and retrieval of computational neuroscience models expressed in NeuroML, which is an extensible XML-based language for describing complex mathematical models of neurons and neuronal networks. NeuroML models are unique in their modular and multi-scale structure, where subcomponents of models can correspond to neuroscience models. In particular, the NeuroML database allows for efficient searches over the components of models and metadata that are associated with a hierarchical NeuroML model description.

Proper citation: NeuroML Database (RRID:SCR_013705) Copy   

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http://www.ncbi.nlm.nih.gov/clone/

A database which integrates information about genomic clones and libraries, including sequence data, map positions and distributor information. A clone's standardized name in Clone DB is comprised of its microtiter plate address with plate number row and column, prefixed by the standard library abbreviation, to provide a unique clone name. Libraries with records may be accessed via the genomic or cell-based library browsers.

Proper citation: Clone DB (RRID:SCR_013791) Copy   

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http://biobank.duke.edu/brpc/

A biomaterial supply and access service resource which provides a shared resource for coordinated tissue processing and biorepository services. Services include patient identification and informed consent, specimen collection, processing and banking, and annotation of banked specimens and specimen distribution. They provide biospecimen inventory management, services, and equipment. It is a shared resource of Duke University.

Proper citation: Biospecimen Repository and Processing Core (RRID:SCR_013792) Copy   

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