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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Calcium Imaging data Analysis project Resource Report Resource Website 1+ mentions |
Calcium Imaging data Analysis project (RRID:SCR_021477) | CaImAn | data or information resource, portal, project portal | Project related to calcium imaging.Provides software library, CaImAn, for one and two-photon Calcium Imaging data Analysis. | calcium imaging analysis, movie handling, motion correction, source extraction, spike deconvolution, result visualization, OpenBehavior |
is listed by: OpenBehavior is related to: Calcium Imaging data Analysis |
DOI:10.7554/elife.38173 | Free, Freely available | SCR_021477 | SciCrunch Registry | Calcium Imaging data Analysis | 2026-10-24 12:50:06 | 2 | |||||||
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BonVision project Resource Report Resource Website |
BonVision project (RRID:SCR_021491) | data or information resource, portal, project portal | Project related to creating and controlling visual environments.Provided open source software package for creating and controlling visual environments was developed by University College London scientists. | Creating visual environments, controlling visual environments, Bonsai, 2D environment, 3D environments, OpenBehavior |
is listed by: OpenBehavior is related to: BonVision has parent organization: University College London; London; United Kingdom |
DOI:10.1101/2020.03.09.983775 | Free, Freely available | SCR_021491 | SciCrunch Registry | BonVision | 2026-10-24 12:50:06 | 0 | ||||||||
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Open Source Whisking Video Database portal Resource Report Resource Website |
Open Source Whisking Video Database portal (RRID:SCR_021404) | data or information resource, portal, project portal | Portal provides shared database of videos featuring juvenile and adult male rats and adult male mice exploring stationary objects.This dataset includes wide variety of experimental conditions including genetic, pharmacological, and sensory deprivation interventions to explore how active sensing behavior is modulated by different factors. Database of high speed videos of whisking behavior in freely moving rodents.Open source high speed infrared videography database to study principles of active sensing in freely navigating rodents. | High speed videos, whisking behavior, freely moving rodents, infrared videography database, active sensing, OpenBehavior |
is listed by: OpenBehavior is related to: Open Source Whisking Video Database |
DOI:10.1093/gigascience/giy134 | Free, Freely available | SCR_021404 | SciCrunch Registry | 2026-10-24 12:50:08 | 0 | |||||||||
|
DeepFly3D Resource Report Resource Website 1+ mentions |
DeepFly3D (RRID:SCR_021402) | data processing software, image analysis software, software application, software resource | Software tool as PyTorch and PyQT5 implementation of 2D-3D tethered Drosophila pose estimation. Image annotation tool used for pose estimation and appendage tracking. Provides interface for pose estimation and to permit further correction of 2D pose estimates, which are automatically converted to 3D pose. | Image annotation, pose tracking, pose estimation, motor circuit, behavioral measure, accurate 3D pose estimation, OpenBehavior |
is listed by: OpenBehavior is related to: DeepFly3D project |
DOI:10.7554/elife.48571 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/deepfly3d/ | SCR_021402 | SciCrunch Registry | 2026-10-24 12:50:05 | 1 | ||||||||
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MedParse Resource Report Resource Website |
MedParse (RRID:SCR_021528) | data processing software, software application, software resource | Software tool to read MedPC data into Python and Matlab. MedPC code for saving precise times of behavioral events and MatLab and Python functions to convert MedPC data into time event codes. | Read MedPC data, Python, Matlab, behavioral events, time event codes, OpenBehavior |
is listed by: OpenBehavior is related to: MedParse project |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/medparse/ | SCR_021528 | SciCrunch Registry | 2026-10-24 12:50:07 | 0 | |||||||||
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Argus Resource Report Resource Website 1+ mentions |
Argus (RRID:SCR_021585) | data or information resource, portal, project portal, software resource | Portal provides software tool for analysis and quantification of both single and socially interacting zebrafish. Software data extraction and analysis tool built in open source R language for tracking zebrafish behavior. | Analysis, quantification, socially interacting zebrafish, OpenBehavior |
is listed by: OpenBehavior is listed by: SoftCite is related to: Argus |
DOI:10.3758/s13428-018-1083-y | Free, Freely available | SCR_021619 | SCR_021585 | SciCrunch Registry | 2026-10-24 12:50:06 | 1 | ||||||||
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MouseMove project Resource Report Resource Website |
MouseMove project (RRID:SCR_021581) | data or information resource, portal, project portal | Portal provides MouseMove software system used to analyze Open Field behavior of mice after experimental stroke to show reduced locomotor activity and to quantify laterality deficits. System is used in combination with open source program ImageJ and MTrack2 plugin to analyze pre recorded Open Field test video. System has two downloadable components, ImageJ macro and separate program with custom built MouseMove GUI. ImageJ is used to subtract background video from experiment and create image of animals total trajectory. MouseMove GUI then completes detailed analysis of movement patterns, measuring fractional time spent stationary, distance traveled, speed mean and various details of laterality. | Open Field behavior analysis, mice after experimental stroke, reduced locomotor activity, quantify laterality deficits, OpenBehavior |
is listed by: OpenBehavior is related to: MouseMove |
DOI:10.1038/srep16171 | Free, Freely available | SCR_021581 | SciCrunch Registry | MouseMove system | 2026-10-24 12:50:07 | 0 | ||||||||
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Automated Classification of Self-grooming in Mice project Resource Report Resource Website 1+ mentions |
Automated Classification of Self-grooming in Mice project (RRID:SCR_021597) | data or information resource, portal, project portal | Portal provides protocol that implements JAABA, open source machine learning based behavior detection system; motr, open-source mouse trajectory tracking software; and bonsai, open source system capable of streaming and recording video. Together they use these tools to process videos of mice performing grooming behaviors in variety of behavioral setups. | grooming behavior, behavior detection protocol, JAABA behavior detection system, motr mouse trajectory tracking software, bonsai streaming and recording video, OpenBehavior | is listed by: OpenBehavior | DOI:10.1016/j.jneumeth.2017.05.026 | Free, Freely available | SCR_021597 | SciCrunch Registry | Automated Classification of Self-grooming in Mice | 2026-10-24 12:50:06 | 1 | ||||||||
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Lightning Pose Resource Report Resource Website |
Lightning Pose (RRID:SCR_024480) | software resource, software toolkit | Software video centric package for direct video manipulation. Semi supervised animal pose estimation algorithm, Bayesian post processing approach and deep learning package. Improved animal pose estimation via semi-supervised learning, Bayesian ensembling, and cloud-native open-source tools. | OpenBehavior, animal pose estimation algorithm, Bayesian post processing approach, direct video manipulation, | is listed by: OpenBehavior | Gatsby Charitable Foundation ; Irma T Hirschl Trust ; NINDS K99NS128075; NINDS NS075023; NINDS U19NS123716; NSF ; Simons Foundation |
PMID:37162966 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/lightningpose/ | SCR_024480 | SciCrunch Registry | 2026-10-24 12:50:15 | 0 | |||||||
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linear actuator Resource Report Resource Website |
linear actuator (RRID:SCR_021613) | software resource, source code | Code and model files for open source linear actuator. Part of Pearce Lab Syringe Pump system. | Pearce Lab Syringe Pump, OpenBehavior |
is listed by: OpenBehavior is related to: Pearce Lab Syringe Pump project |
DOI:10.1371/journal.pone.0107216 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/syringe-pump/ | SCR_021613 | SciCrunch Registry | linear-actuator | 2026-10-24 12:53:06 | 0 | |||||||
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Rodent Operant Bucket Resource Report Resource Website |
Rodent Operant Bucket (RRID:SCR_021610) | software resource, source code | Software tool as ROBucket source code. | ROBucket, OpenBehavior |
is listed by: OpenBehavior is related to: Rodent Operant Bucket project |
DOI:10.3758/s13428-015-0603-2 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/robucket/ | SCR_021610 | SciCrunch Registry | 2026-10-24 12:53:06 | 0 | ||||||||
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chendoscope Resource Report Resource Website |
chendoscope (RRID:SCR_021616) | software resource, source code | Software tool as part of CHEndoscope. Acquisition software that interfaces with CHEndoscope Ximea USB camera. This code is compatible with Linux and Windows systems. | Acquisition software, CHEndoscope Ximea USB camera, OpenBehavior |
is listed by: OpenBehavior is related to: CHEndoscope |
DOI:10.1002/cpns.51 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/chendoscope/ | SCR_021616 | SciCrunch Registry | 2026-10-24 12:53:09 | 0 | ||||||||
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AutoHeadFix Resource Report Resource Website |
AutoHeadFix (RRID:SCR_021617) | software resource, source code | Software Python code for automated control of behavioural apparatus and imaging for mice in home cage environment.Part of Homecage Task Training and Mesoscale Imaging system. | Automated control, behavioural apparatus, imaging for mice, home cage environment, OpenBehavior |
is listed by: OpenBehavior is related to: Homecage Task Training and Mesoscale Imaging project |
DOI:10.7554/elife.55964 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/training-mesoscale-imaging/ | SCR_021617 | SciCrunch Registry | 2026-10-24 12:53:07 | 0 | ||||||||
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craniobot Resource Report Resource Website |
craniobot (RRID:SCR_021609) | software resource, software toolkit, source code | Software tool as part of Craniobot system.Generates, sends, and receives commands to communicate with the Craniobot. | Software resource, OpenBehavior |
is listed by: OpenBehavior is related to: Craniobot project |
DOI:10.1038/s41598-018-37073-w | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/craniobot/ | SCR_021609 | SciCrunch Registry | craniobot | 2026-10-24 12:53:07 | 0 | |||||||
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Automated Home-Cage Functional Imaging Resource Report Resource Website |
Automated Home-Cage Functional Imaging (RRID:SCR_021607) | software resource, source code | Software tool as part of Automated Home Cage Functional Imaging system. | Software resource, OpenBehavior |
is listed by: OpenBehavior is related to: Automated Home-Cage Functional Imaging project |
DOI:10.1038/ncomms11611 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/automated-home-cage-functional-imaging/ | SCR_021607 | SciCrunch Registry | 2026-10-24 12:53:09 | 0 | ||||||||
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Scintillate Resource Report Resource Website |
Scintillate (RRID:SCR_021531) | software resource, source code | Open source graphical viewer for time series calcium imaging evaluation and pre-processing. | image acquisition, time series calcium imaging evaluation, calcium imaging, |
is listed by: OpenBehavior is related to: Scintillate project |
DOI:10.1016/j.jneumeth.2016.08.010 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/scintillate/ | SCR_021531 | SciCrunch Registry | 2026-10-24 12:53:07 | 0 | ||||||||
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flyPAD Resource Report Resource Website 1+ mentions |
flyPAD (RRID:SCR_021522) | software resource, source code | FPGA code for running main board of flyPAD. Code written in VHDL using Quartus 2 web edition software. | FPGA code, running main board of flyPAD, VHDL, Quartus 2, OpenBehavior |
is listed by: OpenBehavior is related to: flyPAD project |
DOI:10.1038/ncomms5560 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/optopad-and-flypad/ | SCR_021522 | SciCrunch Registry | 2026-10-24 12:53:08 | 1 | ||||||||
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pyOS-5 Resource Report Resource Website |
pyOS-5 (RRID:SCR_022336) | software resource, source code | Operant Box code | OpenBehavior, neurophysiology |
is listed by: OpenBehavior is related to: pyOS-5 project |
DOI:10.1038/s41598-021-01717-1 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/pyos-5/ | SCR_022336 | SciCrunch Registry | 2026-10-24 12:53:09 | 0 | ||||||||
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BehaviorDEPOT Resource Report Resource Website 1+ mentions |
BehaviorDEPOT (RRID:SCR_023602) | software resource, source code | Software tool for automated behavioral detection based on markerless pose tracking. Behavioral analysis tool to first compile and clean point-tracking output from DeepLabCut, and then classify behavioral epochs using custom behavior classifiers. Used to detect frame by frame behavior from video time series and can analyze results of common experimental assays, including fear conditioning, decision-making in T-maze, open field, elevated plus maze, and novel object exploration. Calculates kinematic and postural statistics from keypoint tracking data from pose estimation software outputs. | OpenBehavior, automated behavioral detection, markerless pose tracking, detect frame by frame behavior, video time series, kinematic and postural statistics, |
is listed by: OpenBehavior is related to: SLEAP, LEAP and MotionMapper project works with: DeepLabCut |
Brain and Behavior Research Foundation ; Brain Research Foundation ; NIMH K01MH116264; NIMH K08MH116125; NIMH T32MH073526; NSF ; Simonsen Foundation ; Whitehall Foundation |
PMID:35997072 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/behaviordepot/ | SCR_023602 | SciCrunch Registry | 2026-10-24 12:53:19 | 2 | |||||||
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AnimalTA Resource Report Resource Website 1+ mentions |
AnimalTA (RRID:SCR_023784) | software resource, source code | Software video tracking tool for tracking and analysing animal movement in different environments. | OpenBehavior, video tracking, tracking and analysing animal movement, animal movement in different environments, | is listed by: OpenBehavior | DOI:10.1111/2041-210X.14115 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/animalta/ | SCR_023784 | SciCrunch Registry | Animal Tracking and Analysis | 2026-10-24 12:53:20 | 2 |
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