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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Brain Intensity AbNormality Classification Algorithm Resource Report Resource Website 1+ mentions |
Brain Intensity AbNormality Classification Algorithm (RRID:SCR_024928) | BIANCA | data processing software, image analysis software, segmentation software, software application, software resource | Software tool for automated segmentation of white matter hyperintensities. Classifies image’s voxels based on their intensity and spatial features, and the output image represents the probability per voxel of being WMH. Flexible in terms of MRI modalities to use and offers different options for weighting spatial information, local spatial intensity averaging, and different options for choice of number and location of training points. | images voxels classification, automated segmentation of white matter hyperintensities, white matter hyperintensities, | is a plug in for: FSL | NIHR Oxford Biomedical Research Centre ; UK Stroke Association ; Wellcome Trust ; Wolfson Foundation |
PMID:27402600 | Free, Freely available | SCR_024928 | BIANKA:Brain Intensity AbNormality Classification Algorithm | 2026-09-12 01:04:34 | 7 | ||||||
|
IBEX Knowledge Base Resource Report Resource Website 1+ mentions |
IBEX Knowledge Base (RRID:SCR_025296) | knowledge base | Open, global repository as central resource for reagents, protocols, panels, publications, software, and datasets. In addition to IBEX, we support standard, single cycle multiplexed imaging (Multiplexed 2D imaging), volume imaging of cleared tissues with clearing enhanced 3D (Ce3D), highly multiplexed 3D imaging (Ce3D-IBEX), and extension of the IBEX dye inactivation protocol to the Leica Cell DIVE (Cell DIVE-IBEX). Committed to sharing knowledge related to multiplexed imaging. Antibody validation community knowledgebase. | Antibody, validation, multiplexed imaging, | Chan Zuckerberg Initiative ; NCI ; NIAID ; Schroeder Allergy and Immunology Research Institute ; McMaster University ; CA ; Wellcome Trust |
Free, Freely available | https://zenodo.org/records/7693279 | SCR_025296 | Iterative Bleaching Extends Multiplexity (IBEX) Knowledge-Base | 2026-09-12 01:04:41 | 4 | ||||||||
|
UK Biobank Resource Report Resource Website 1000+ mentions |
UK Biobank (RRID:SCR_012815) | biobank, material storage repository, service resource, storage service resource | Biobank provides data collected at Assessment Center and via online questionnaires on participants aged 40-69 years recruited throughout United Kingdom and provides summary information to improve prevention, diagnosis and treatment of serious and life threatening illnesses. | Data, collected, United Kingdom, prevention, diagnosis, treatment, illness, questionnaire, blood, urine, saliva, cognitive function, psychological status, hearing test, interview, operation, medication, blood pressure, body measurementdie |
is listed by: One Mind Biospecimen Bank Listing is related to: AstraZeneca PheWAS Portal |
cancer, heart diseases, stroke, diabetes, arthritis, osteoporosis, eye disorders, depression, dementia. | MRC ; Scottish Government ; UK Department of Health ; Wellcome Trust ; Welsh Assembly Government |
grid.421945.f, nlx_95741, ISNI: 0000 0004 0396 0496, Wikidata: Q7864819 | https://ror.org/02frzq211 | SCR_012815 | 2026-09-12 01:03:46 | 3905 | |||||||
|
TryTripDB Resource Report Resource Website 10+ mentions |
TryTripDB (RRID:SCR_028607) | data or information resource, database | Free online resource for data mining of genomic and functional data from these kinetoplastid parasites and is part of the VEuPathDB Bioinformatics Resource Center. Integrates functional genome scale datasets (e.g. transcript expression, protein expression, genetic variation data) and information predicted from automated bioinformatics pipelines and from manual curation. Provides a user friendly web interface and a number of tools and functions for users to conduct in silico experiments to ask questions and generate hypotheses. Researchers can also contribute their expertise via the User Comments form and Apollo annotation platform, and utilize cloud-based workspace to analyze their own data. | data mining, genomic data, functional data, kinetoplastid parasites, | NIAID ; Wellcome Trust |
PMID:36656904 | Free, Freely available | SCR_028607 | 2026-09-12 01:05:55 | 14 | |||||||||
|
University of Edinburgh Wellcome Trust Centre for Cell Biology Bioinformatics Core Facility Resource Report Resource Website |
University of Edinburgh Wellcome Trust Centre for Cell Biology Bioinformatics Core Facility (RRID:SCR_017151) | University of Edinburgh WTCCB Bioinformatics Core Facility | access service resource, core facility, service resource | Facility provides regular training sessions, tools, advice and data analysis services to Centre members. | core, facility, bioinformatics | has parent organization: University of Edinburgh; Scotland; United Kingdom | Wellcome Trust | Restricted | SCR_017151 | 2026-09-12 01:03:59 | 0 | ||||||||
|
TWOMBLI Resource Report Resource Website 1+ mentions |
TWOMBLI (RRID:SCR_027217) | software resource, software toolkit, source code | Software pipeline includes metrics of matrix alignment, length, branching, end points, gaps, fractal dimension, curvature, and the distribution of fibre thickness. FIJI macro for quantifying pattern in extracellular matrix. | quantifying pattern in extracellular matrix, matrix alignment, length, branching, end points, gaps, fractal dimension, curvature, distribution of fibre thickness, | is a plug in for: Fiji | Cancer Research UK ; Spanish Society for Medical Oncology ; UK Medical Research Council ; Wellcome Trust |
PMID:33504622 | Free, Available for download, Freely available, | SCR_027217 | Workflow Of Matrix BioLogy Informatics, , Workflow Of Matrix BioLogy Informatics (TWOMBLI) | 2026-09-12 01:05:22 | 1 | |||||||
|
Vireo Resource Report Resource Website 1+ mentions |
Vireo (RRID:SCR_027463) | software application, software resource, source code | Software tool for Bayesian demultiplexing of pooled single-cell RNA-seq data without genotype reference. | Bayesian demultiplexing, pooled single-cell RNA-seq data, without genotype reference, | EMBL-EBI ; Medical Research Council ; National Health and Medical Research Council of Australia ; University of Cambridge ; Wellcome Trust |
PMID:31836005 | Free, Available for download, Freely available | SCR_027463 | 2026-09-12 01:05:27 | 2 | |||||||||
|
Cell Model Passports Resource Report Resource Website 10+ mentions |
Cell Model Passports (RRID:SCR_027682) | catalog, data or information resource, database | Hub for clinical, genetic and functional datasets of preclinical cancer models.Provides details of cell model relationships, patient and clinical information, as well as access to associated genetic and functional datasets. Passports database contains curated details and standardized annotation for cell models, including cancer organoid cultures. Users can navigate database via tissue, cancer-type, genetic feature and data availability to select model. REST-API provides programmatic data access and exploration. | clinical, genetic, functional, datasets, preclinical cancer models, | has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom | Wellcome Sanger Institute ; Wellcome Trust |
PMID:30260411 | Free, Freely available | SCR_027682 | 2026-09-12 01:05:33 | 15 |
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