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http://www.psychologytraining.va.gov/

VA provides Internships, Postdoctoral Fellowships, and Practicum Training in many sites across the U.S. With about 470 internship positions at 93 locations and 260 postdoctoral fellowship positions at 65 sites funded each year, VA is the largest provider of training in Psychology in the nation. We have continued to expand our training opportunities and added 70 additional positions for the 2011-2012 academic year. These positions included additional internship and postdoctoral positions within existing training programs and the development of new internship programs in Boise ID, Canandaigua NY, Columbia SC, Huntington WV, Indianapolis IN, Madison WI, Philadelphia PA, Tuscaloosa AL, and West Palm Beach FL. In the meantime, the four internships started in 2008 (Anchorage AK, Asheville NC, Iowa City IA, and Richmond VA) have graduated their second classes and have now begun their third year. The internship program in Richmond is accredited through 2017. The other three programs do not yet have APA accreditation, but all have begun the accreditation process. In the interim, graduates of these programs will be eligible for employment as psychologists within the Department of Veterans Affairs just as are graduates from accredited programs. All existing VA Internship and many Postdoctoral Psychology training programs hold APA accreditation status.

Proper citation: Psychology Training - VA Fellowships and Internships (RRID:SCR_001839) Copy   

•   Source: SciCrunch Registry
  

http://www.pdf.org/

A U.S. organization which funds Parkinson's disease research and provides materials and services to patients. PDF funds research through: research centers at major universities; early-career investigators that devote their talents to the study of Parkinsons; funding independent investigators through the International Research Grants Program; and collaboration with other organizations on innovative projects.

Proper citation: Parkinson's Disease Foundation (RRID:SCR_001832) Copy   

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http://ccb.jhu.edu/software/ASprofile/

A suite of programs for extracting, quantifying and comparing alternative splicing (AS) events from RNA-seq data.

Proper citation: ASprofile (RRID:SCR_001833) Copy   

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https://github.com/cengique/pandora-matlab

Matlab toolbox for analyzing neuronal electrophysiology data and constructing databases.

Proper citation: PANDORA Matlab Toolbox (RRID:SCR_001831) Copy   

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https://cran.r-project.org/src/contrib/Archive/QuasiSeq/

Software package to apply the QL, QLShrink and QLSpline methods to quasi-Poisson or quasi-negative binomial models for identifying differentially expressed genes in RNA-seq data.

Proper citation: QuasiSeq (RRID:SCR_001715) Copy   

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http://www.ku.edu.tr/en

Non-profit private university in Istanbul, Turkey that offers undergraduate and graduate degree programs in sciences, humanities, engineering, social sciences, medicine, and nursing.

Proper citation: Koc University; Istanbul; Turkey (RRID:SCR_001836) Copy   

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http://www.phosphosite.org

A freely accessible on-line systems biology resource devoted to all aspects of protein modification, as well as other post-translational modifications. It provides valuable and unique tools for both cell biologists and mass spectroscopists. PhosphoSite is a human- and mouse-centric database. It includes features such as: viewing the locations of modified residues on molecular models; browsing and searching MS2 records by disease, tissue, and cell line; submitting lists of peptides to identify previously reported genes; searching by sub-cellular localization, treatment, tissues, cell types, cell lines and diseases, and protein types and protein domains; searching for experimentally-verified kinase substrates and viewing preferred substrate motifs; and viewing MS2 spectra for peptides and sites not previously published.

Proper citation: PhosphoSitePlus: Protein Modification Site (RRID:SCR_001837) Copy   

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https://radiology.duke.edu/research/centers-and-shared-resources/center-advanced-magnetic-resonance-development

Research facility of the Department of Radiology at the Duke University Medical Center (DUMC) providing access to a whole-body, commercially manufactured 3 Tesla (Trio, Siemens Medical Systems) MR Imaging and Spectroscopy System with full research capability. The Center is fully equipped to perform clinical and research MR imaging or spectroscopy studies on humans or large animals. A full range of monitoring, anesthesia, RF coil development, computer and instrumental control facilities as well as MR research technologists and physics/chemistry consultation are available to Department of Radiology researchers and their collaborators.

Proper citation: CAMRD (RRID:SCR_001713) Copy   

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http://www.bioconductor.org/packages/release/bioc/html/OrderedList.html

An R / bioconductor package for detecting similarity in ordered gene lists. Thereby, either simple lists can be compared or gene expression data can be used to deduce the lists. Significance of similarities is evaluated by shuffling lists or by resampling in microarray data, respectively.

Proper citation: OrderedList (RRID:SCR_001834) Copy   

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http://nashua.case.edu/PathwaysWeb/Web/

An integrated software system for storing, managing, analyzing, and querying biological pathways at different levels of genetic, molecular, biochemical and organismal detail. The system contains a pathways database and associated tools to store, compare, query, and visualize metabolic pathways. The aim is to develop an integrated database and the associated tools to support computational analysis and visualization of biochemical pathways. At the computational level, PathCase allows users to visualize pathways in multiple abstraction levels, and to pose predetermined and ad hoc queries using a graphical user interface. Pathways are represented as graphs, and implemented as a relational database. The available functional annotations include the identity of the substrate(s), product(s), cofactors, activators, inhibitors, enzymes or other processing molecules, GO-categories of enzymes (as well as GO hierarchy visualizations two-way-linked to PathCase enzymes), EC number information and the associated links, and synonyms and encoding genes of gene products.

Proper citation: PathCase Pathways Database System (RRID:SCR_001835) Copy   

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http://www.nitrc.org/projects/medvr/

This resouce will centralize development of tools for interaction with medical imaging data in immersive virtual environments (based on the Vizard platform).

Proper citation: Medical Image Processing and Visualization in Virtual Environments (RRID:SCR_001751) Copy   

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https://gene.sfari.org/database/human-gene/

Curated public database for autism research built on information extracted from the studies on molecular genetics and biology of Autism Spectrum Disorders (ASD). The genetic information includes data from linkage and association studies, cytogenetic abnormalities, and specific mutations associated with ASD. New gene submissions are welcome. Modules: * Human Gene: thoroughly annotated list of genes that have been studied in the context of autism, with information on the genes themselves, relevant references from the literature, and the nature of the evidence. Uniquely, SFARI Gene incorporates information on both common and rare variants. * Animal Model: information about lines of genetically modified mice that represent potential models of autism. This information includes the nature of the targeting construct, the background strain and, most importantly, a thorough summary of the phenotypic features of the mice that are most relevant to autism. * Protein Interaction (PIN): compilation of all known direct protein interactions for those gene products implicated in autism. It presents both graphical and tabular views of interactomes, highlighting connections between autism candidate genes. Each protein interaction is manually verified by consultation with the primary reference. * Copy Number Variant (CNV): a parallel resource providing genetic information about all known copy number variants linked to autism. * Gene Scoring: includes a "score" for each autism candidate gene, based on an assessment of the strength of human genetic evidence.

Proper citation: AutDB (RRID:SCR_001872) Copy   

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http://www.public.asu.edu/~jye02/Software/SLEP/

Software package that provides functions for solving a family of sparse learning algorithms. The functions implemented enjoy the convergence rate of O(1/k^2), although the objective function is non-smooth. Main features: * First-Order Method. At each iteration, they only need to evaluate the function value and the gradient; and thus the algorithms can handle large-scale sparse data. * Optimal Convergence Rate. The convergence rate O(1/k^2) is optimal for smooth convex optimization via the first-order black-box methods. * Efficient Projection. The projection problem (proximal operator) can be solved efficiently. * Pathwise Solutions. The SLEP package provides functions that efficiently compute the pathwise solutions corresponding to a series of regularization parameters by the warm-start technique.

Proper citation: Sparse Learning with Efficient Projections (RRID:SCR_001870) Copy   

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https://en.wikipedia.org/wiki/Ministry_of_Education,_Science_and_Technology_(South_Korea)

THIS RESOURCE IS NO LONGER IN SERVICE, documented April 11, 2017. Division within the South Korean government that handled affairs of education and science. It has since been split into Ministry of Science, ICT and Future Planning and Ministry of Education.

Proper citation: Korean Ministry of Education Science and Technology (RRID:SCR_001871) Copy   

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http://www.socialanxietydisorder.net/

This site is about Social Anxiety Disorder, how to diagnose social anxiety, how to live and cope with social anxiety, and how to treat social anxiety. Additionally, this website also intends to educate, inform, promote self-help, and provide a way to facilitate dialog between those who suffer from social phobia.

Proper citation: Social Anxiety Disorder: Learn How to Cope with Anxiety (RRID:SCR_001863) Copy   

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https://www.bioconductor.org/packages//2.7/bioc/html/plateCore.html

Software that provides basic S4 data structures and routines for analyzing plate based flow cytometry data.

Proper citation: plateCore (RRID:SCR_001743) Copy   

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http://www.pathwaycommons.org/

Data management software that runs the Pathway Commons web service. It makes it easy to aggregate custom pathway data sets available in standard exchange formats from multiple databases, present pathway data to biologists via a customizable web interface, and export pathway data via a web service to third-party software, such as Cytoscape, for visualization and analysis. cPath is software only, and does not include new pathway information. Main features: * Import pipeline capable of aggregating pathway and interaction data sets from multiple sources, including: MINT, IntAct, HPRD, DIP, BioCyc, KEGG, PUMA2 and Reactome. * Import/Export support for the Proteomics Standards Initiative Molecular Interaction (PSI-MI) and the Biological Pathways Exchange (BioPAX) XML formats. * Data visualization and analysis via Cytoscape. * Simple HTTP URL based XML web service. * Complete software is freely available for local install. Easy to install and administer. * Partly funded by the U.S. National Cancer Institute, via the Cancer Biomedical Informatics Grid (caBIG) and aims to meet silver-level requirements for software interoperability and data exchange.

Proper citation: cPath (RRID:SCR_001749) Copy   

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http://datahub.io/dataset/kupkb

A collection of omics datasets (mRNA, proteins and miRNA) that have been extracted from PubMed and other related renal databases, all related to kidney physiology and pathology giving KUP biologists the means to ask queries across many resources in order to aggregate knowledge that is necessary for answering biological questions. Some microarray raw datasets have also been downloaded from the Gene Expression Omnibus and analyzed by the open-source software GeneArmada. The Semantic Web technologies, together with the background knowledge from the domain's ontologies, allows both rapid conversion and integration of this knowledge base. SPARQL endpoint http://sparql.kupkb.org/sparql The KUPKB Network Explorer will help you visualize the relationships among molecules stored in the KUPKB. A simple spreadsheet template is available for users to submit data to the KUPKB. It aims to capture a minimal amount of information about the experiment and the observations made.

Proper citation: Kidney and Urinary Pathway Knowledge Base (RRID:SCR_001746) Copy   

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http://faculty.washington.edu/chudler/disorders.html

Online portal resource with hierarchically-organized list of links to web resources concerning neurological disorders.

Proper citation: Neurological Disorder Resources (RRID:SCR_001747) Copy   

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http://www.sandiegopsychiatricsociety.org/

The San Diego Psychiatric Society is a local medical specialty society. It is the district branch of the American Psychiatric Association and the California Psychiatric Association. The physician members specialize in the diagnosis and treatment of mental and emotional disorders and substance abuse. The San Diego Psychiatric Society's organizational objectives include the advancement and improvement of care for persons with mental illness through public information, education, and awareness programs and material. The society represents over 400 psychiatrists, who are the primary mental health advocates for quality patient care. The organization works to improve the public's awareness of mental illness and increase legislative and financial support of psychiatric care. Members serve in community mental health organizations, and advise the legislature on mental health issues.

Proper citation: San Diego Psychiatric Society (RRID:SCR_001855) Copy   

•   Source: SciCrunch Registry