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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
libStatGen Resource Report Resource Website |
libStatGen (RRID:SCR_024093) | software toolkit, software resource, software library | Software library as set of classes for creating statistical genetic programs. | creating statistical genetic programs | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/libstatgen/, https://github.com/statgen/libStatGen | SCR_024093 | C++ Library: libStatGen, libstatgen | 2026-07-30 09:31:36 | 0 | ||||||||
|
ThreadPool Resource Report Resource Website |
ThreadPool (RRID:SCR_024094) | software toolkit, software resource, software library | Software C++ thread pool library. | C++ thread pool library | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/libthread-pool/ | SCR_024094 | Thread pool, libthread-pool | 2026-07-30 09:31:54 | 0 | ||||||||
|
BBHash Resource Report Resource Website |
BBHash (RRID:SCR_023972) | software toolkit, software resource, software library | Software library for building minimal perfect hash function. Designed to handle large scale datasets. | hash function library, large scale datasets, | is listed by: Debian | Free, Available for download, Freely available | https://sources.debian.org/src/bbhash/ | SCR_023972 | bbhash | 2026-07-30 09:31:53 | 0 | ||||||||
|
Atropos Resource Report Resource Website 1+ mentions |
Atropos (RRID:SCR_023962) | software resource, software application, source code | Software tool for specific, sensitive, and speedy trimming of NGS reads. | speedy trimming of NGS reads, NGS reads, Next Generation Sequencing, | is listed by: Debian | PMID:28875074 | Free, Available for download, Freely available | OMICS_20869 | https://sources.debian.org/src/atropos/ | SCR_023962 | atropos | 2026-07-30 09:31:35 | 3 | ||||||
|
libdivsufsort Resource Report Resource Website 1+ mentions |
libdivsufsort (RRID:SCR_024079) | software toolkit, software resource, software library | Software library that implements lightweight suffix array construction algorithm. Provides C API to construct suffix array and Burrows-Wheeler transformed string from given string over constant size alphabet. The algorithm runs in O(n log n) worst-case time using only 5n+O(1) bytes of memory space, where n is the length of the string. | suffix array construction algorithm, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/libdivsufsort/ | SCR_024079 | libdivsufsort: A lightweight suffix-sorting library | 2026-07-30 09:31:43 | 1 | ||||||||
|
libdisorder Resource Report Resource Website |
libdisorder (RRID:SCR_024072) | software toolkit, software resource, software library | Software C library for entropy measurement of byte streams and other data. | C library, entropy measurement of byte streams, C Library, Entropy Measurement, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/libdisorder/, https://github.com/locasto/libdisorder | SCR_024072 | libdisorder | 2026-07-30 09:31:36 | 0 | ||||||||
|
libminc Resource Report Resource Website |
libminc (RRID:SCR_024086) | software toolkit, software resource, software library | Software core library and API of the Medical Image NetCDF toolkit. | Medical Image NetCDF library | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/libminc/ | SCR_024086 | Medical Image NetCDF library | 2026-07-30 09:31:43 | 0 | ||||||||
|
libqc++ Resource Report Resource Website |
libqc++ (RRID:SCR_024088) | software toolkit, software resource, software library | Software C++11 library for next-gen sequence quality control and assessment. | C++11 library, next-gen sequence quality control and assessment, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/libqcpp/ | SCR_024088 | libqcpp | 2026-07-30 09:31:54 | 0 | ||||||||
|
SSW Library Resource Report Resource Website |
SSW Library (RRID:SCR_024089) | software toolkit, software resource, software library | SIMD Smith-Waterman C/C++ library for use in genomic applications. SSW is a fast implementation of the Smith-Waterman algorithm, which uses the Single-Instruction Multiple-Data (SIMD) instructions to parallelize the algorithm at the instruction level. SSW library provides an API that can be flexibly used by programs written in C, C++ and other languages. | Smith-Waterman algorithm, C/C++ library, genomic applications, Single-Instruction Multiple-Data, parallelize algorithm at instruction level, | is listed by: Debian | PMID:24324759 | Free, Available for download, Freely available, | OMICS_20525 | https://sources.debian.org/src/libssw/ | SCR_024089 | , SIMD Smith-Waterman Library, libssw, Complete-Striped-Smith-Waterman-Library | 2026-07-30 09:31:43 | 0 | ||||||
|
libics Resource Report Resource Website |
libics (RRID:SCR_024085) | software toolkit, software resource, software library | Software reference library for Image Cytometry Standard, an open standard for writing images of any dimensionality and data type to file, together with associated information regarding the recording equipment or recorded subject.Image Cytometry Standard file reading and writing. | reference library for Image Cytometry Standard, open standard for writing images, Image Cytometry Standard file reading and writing, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/libics/, https://github.com/svi-opensource/libics | SCR_024085 | libics- Image Cytometry Standard file reading and writing | 2026-07-30 09:31:54 | 0 | ||||||||
|
Placnet Resource Report Resource Website |
Placnet (RRID:SCR_024176) | software toolkit, software resource, software library | Software Perl tools for plasmid analysis in NGS projects.Identifies, visualizes and analyzes plasmids in WGS projects by creating a network of contig interactions, thus allowing comprehensive plasmid analysis within WGS datasets.Optimized to work with Illumina sequences but it also works with 454, Iontorrent or any of the actual sequence technologies. The input of placnet is a set of contigs and one or more SAM files with the mapping of the reads against the contigs. Placnet obtains a set of files, easily opened on Cytoscape software or other network tools. | plasmid constellation networks, identifies splasmids, visualizes and analyzes plasmids, WGS projects, creating network of contig interactions, comprehensive plasmid analysis within WGS datasets, | is listed by: Debian | PMID:25522143 | Free, Available for download, Freely available, | OMICS_11487 | https://sources.debian.org/src/placnet/ | SCR_024176 | plasmid constellation networks, placnet | 2026-07-30 09:31:55 | 0 | ||||||
|
PRINSEQ Resource Report Resource Website 50+ mentions |
PRINSEQ (RRID:SCR_024178) | software toolkit, software resource, software library | Software Perl application for quality control and data preprocessing of genomic and metagenomic datasets. Used to filter, reformat, or trim genomic and metagenomic sequence data. Generates summary statistics of sequences in graphical and tabular format. | data quality control, data preprocessing, genomic and metagenomic datasets, | is listed by: Debian | PMID:21278185 | Free, Available for download, Freely available, | https://sources.debian.org/src/prinseq-lite/ | SCR_024178 | prinseq-lite | 2026-07-30 09:31:37 | 72 | |||||||
|
POA Resource Report Resource Website |
POA (RRID:SCR_024172) | software toolkit, software resource, software library | Software application for multiple sequence alignment in bioinformatics. Has superior ability to handle branching / indels in the alignment. | sequence alignment, multiple sequence alignment, handle branching in alignment, handle indels in alignment, | is listed by: Debian | DOI:10.1093/bioinformatics/bth126 | Free, Available for download, Freely available, | OMICS_14254 | https://sources.debian.org/src/poa/ | SCR_024172 | poa, Partial Order Alignment | 2026-07-30 09:31:55 | 0 | ||||||
|
PLIP Resource Report Resource Website 100+ mentions |
PLIP (RRID:SCR_024173) | software toolkit, software resource, software library | Software application as protein�ligand interaction profiler to identify non-covalent interactions between biological macromolecules and their ligands. Provides atom level information on binding characteristics as well as publication ready visualizations and parsable output files. PLIP web tool is based on PLIP command line tool and offers graphical interface for analysis of few structures. | Protein Ligand Interaction Profiler, | is listed by: Debian | DOI:10.1093/nar/gkv315 | Free, Available for download, Freely available, | OMICS_08028 | https://sources.debian.org/src/plip/, https://github.com/pharmai/plip | SCR_024173 | Protein-Ligand Interaction Profiler, plip | 2026-07-30 09:31:44 | 109 | ||||||
|
rapmap Resource Report Resource Website 1+ mentions |
rapmap (RRID:SCR_024204) | software toolkit, software resource, software library | Software tool for mapping RNA-seq reads to transcriptomes. Used for rapid sensitive and accurate read mapping via quasi-mapping | mapping RNA-seq reads to transcriptomes, mapping RNA-seq reads, | is listed by: Debian | PMID:27307617 | Free, Available for download, Freely available, | OMICS_10349 | https://sources.debian.org/src/rapmap/ | SCR_024204 | RapMap | 2026-07-30 09:31:38 | 9 | ||||||
|
pyFAI Resource Report Resource Website 1+ mentions |
pyFAI (RRID:SCR_024186) | software toolkit, software resource, software library | Open source Python software package designed to perform azimuthal integration and, correspondingly, two-dimensional regrouping on area-detector frames for small- and wide-angle X-ray scattering experiments. | perform azimuthal integration, two-dimensional regrouping, area detector frames for small and wide angle X-ray scattering experiments, | is listed by: Debian | PMID:25844080 | Free, Available for download, Freely available, | https://sources.debian.org/src/pyfai/ | SCR_024186 | pyfai, pyFai | 2026-07-30 09:31:37 | 7 | |||||||
|
parallel-fastq-dump Resource Report Resource Website 1+ mentions |
parallel-fastq-dump (RRID:SCR_024150) | software toolkit, software resource, software library | Software wrapper to speed up downloading process by dividing the work into multiple threads. | wrapper, speed up downloading process, dividing the work into multiple threads, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/parallel-fastq-dump/ | SCR_024150 | 2026-07-30 09:31:55 | 7 | |||||||||
|
OptimiR Resource Report Resource Website |
OptimiR (RRID:SCR_024149) | software toolkit, software resource, software library | Software miRSeq data alignment workflow. Used to integrate genetic information to assess the impact of variants on miRNA expression. Used for integrating genome wide genotype data into miRNA sequence alignment analysis. | miRSeq data alignment workflow, integrate genetic information, assess impact of variants, miRNA expression, integrating genome wide genotype data, miRNA sequence alignment analysis, | is listed by: Debian | PMID:30819774 | Free, Available for download, Freely available, | OMICS_33123 | https://sources.debian.org/src/optimir/ | SCR_024149 | optimir | 2026-07-30 09:31:37 | 0 | ||||||
|
Phyx Resource Report Resource Website 1+ mentions |
Phyx (RRID:SCR_024164) | software toolkit, software resource, software library | Software phylogenetic tools for unix. Used to perform phylogenetics analyses on trees and sequences. Collection of programs written in C ++ to explore, manipulate, analyze and simulate phylogenetic objects. | phylogenetic tools for unix, perform phylogenetics analyses on trees and sequences, C ++, explore phylogenetic objects, manipulate phylogenetic objects, analyze and simulate phylogenetic objects, | is listed by: Debian | PMID:28174903 | Free, Available for download, Freely available, | https://sources.debian.org/src/phyx/ | SCR_024164 | 2026-07-30 09:31:44 | 1 | ||||||||
|
qtltools Resource Report Resource Website 10+ mentions |
qtltools (RRID:SCR_024200) | software toolkit, software resource, software library | Software tool set for molecular Quantitative Trait Loci discovery and analysis. Allows to go from raw sequence data to collection of molecular Quantitative Trait Loci in few easy-to-perform steps. | molecular Quantitative Trait Loci, QTL discovery and analysis, | is listed by: Debian | PMID:28516912 | Free, Available for download, Freely available, | OMICS_18457 | https://sources.debian.org/src/qtltools/ | SCR_024200 | 2026-07-30 09:31:45 | 41 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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