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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PyRosetta Resource Report Resource Website 10+ mentions |
PyRosetta (RRID:SCR_018541) | software application, software resource, standalone software | Interactive Python based interface to Rosetta molecular modeling suite. Stand alone Python based implementation of Rosetta molecular modeling package that allows users to write custom structure prediction and design algorithms using major Rosetta sampling and scoring functions. | Molecular modeling, custom structure prediction, design algorithm, energy function, scoring function, bio.tools |
uses: Python Programming Language is listed by: bio.tools is listed by: Debian is related to: Rosetta has parent organization: Johns Hopkins University; Maryland; USA |
NIGMS R01 GM078221; NIGMS R01 GM73151; NSF 0846324 |
PMID:20061306 | Free, Freely available | biotools:pyrosetta | https://bio.tools/pyrosetta | SCR_018541 | SciCrunch Registry | Python Rosetta | 2026-09-26 02:19:29 | 25 | |||||
|
QGIS Resource Report Resource Website 100+ mentions |
QGIS (RRID:SCR_018507) | software application, software resource | Open source cross platform desktop geographic information system application that supports viewing, editing, and analysis of geospatial data. Functions as geographic information system software, allowing users to analyze and edit spatial information, in addition to composing and exporting graphical maps. | Geographic information system, viewing, editing, analysis, geospatial data, spatial information analysis, graphical map, bio.tools |
is listed by: Debian is listed by: bio.tools |
Free, Available for download, Freely available | biotools:QGIS | https://bio.tools/QGIS | SCR_018507 | SciCrunch Registry | 2026-09-26 02:19:31 | 488 | ||||||||
|
Spot Resource Report Resource Website 100+ mentions |
Spot (RRID:SCR_018915) | software resource, software toolkit | Open source software tool for file based localization of numerical perturbations in data analysis pipelines. Identifies components in pipeline, at resolution level of system process, that produce different results in different execution conditions. | Numerical perturbation, reproducibility, numerical differences, operating systems, neuroimaging pipeline stability, bio.tools |
is listed by: bio.tools is listed by: Debian |
Free, Freely available, Available for download | DOI:10.5281/zenodo.3873219, biotools:spottool | https://bio.tools/spottool | SCR_018915 | SciCrunch Registry | Spot: File-based localization of numerical perturbations in data analysis pipelines | 2026-09-26 02:19:30 | 148 | |||||||
|
Genomic Annotation in Livestock for positional candidate LOci Resource Report Resource Website 10+ mentions |
Genomic Annotation in Livestock for positional candidate LOci (RRID:SCR_019212) | GALLO | software resource, software toolkit | Software R package developed for accurate annotation of genes and quantitative trait loci located in regions identified in common genomic analyses performed in livestock, such as Genome Wide Association Studies and transcriptomics using RNA-Sequencing. Allows graphical visualization of gene and QTL annotation results, data comparison among different grouping factors like methods, breeds, tissues, statistical models, studies and QTL enrichment in different livestock species including cattle, pigs, sheep, and chickens. | QTLs, multi-omics integration, qtl annotation, gene annotation, datamining, qtl enrichment analysis, livestock, bio.tools |
is listed by: CRAN is listed by: bio.tools is listed by: Debian has parent organization: University of Guelph; Ontario; Canada |
Free, Freely available | biotools:genomic_annotation_in_livestock_for_positional_candidate_loci_gallo | https://bio.tools/genomic_annotation_in_livestock_for_positional_candidate_loci_gallo | SCR_019212 | SciCrunch Registry | 2026-09-26 02:19:30 | 22 | |||||||
|
SMI Services Resource Report Resource Website 1+ mentions |
SMI Services (RRID:SCR_018881) | SMI Services | software resource, software toolkit | Software suite of tools for cataloguing and anonymising DICOM files, as used for Scottish Medical Imaging project. Software suite of microservices for loading, anonymising, linking and extracting large volumnes of dicom medical images to support medical research. Platform allows dicom tags extracted from clinical images to be loaded into MongoDB and relational database tables for purposes of generating anonymous linked research extracts including image anonymisation. | Database management system, anonymising DICOM files, cataloguing DICOM files, medical image, DICOM medical image, image anonymisation, bio.tools |
is listed by: bio.tools is listed by: Debian |
Free, Freely available | biotools:smi_services | https://bio.tools/smi_services | SCR_018881 | SciCrunch Registry | Scottish Medical Imaging Services | 2026-09-26 02:19:31 | 1 |
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