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http://www.mqtldb.org/

Data collection of large scale genome wide DNA methylation analysis of 1,000 mother-child pairs at serial time points across life course (ARIES).

Proper citation: mqtldb (RRID:SCR_018002) Copy   

•   Source: SciCrunch Registry

https://www.postgresql.org/

Open source object relational database system that uses and extends SQL language combined with many features that safely store and scale the most complicated data workloads. PostgreSQL runs on all major operating systems.

Proper citation: PostgreSQL (RRID:SCR_021067) Copy   

•   Source: SciCrunch Registry

https://www.tfcheckpoint.org/

Collection of transcription factors annotated according to experimental and other evidence on their function as true DbTFs. Provides reference for both small scale experiments and genome scale studies. Curated compendium of specific DNA-binding RNA polymerase II transcription factors.

Proper citation: tfcheckpoint (RRID:SCR_023880) Copy   

•   Source: SciCrunch Registry

https://tcmsp-e.com/tcmsp.php

Pharmacology platform of Chinese herbal medicines that captures relationships between drugs, targets and diseases. Database includes chemicals, targets and drug-target networks, and associated drug-target-disease networks, as well as pharmacokinetic properties for natural compounds involving oral bioavailability, drug-likeness, intestinal epithelial permeability, blood-brain-barrier, aqueous solubility.

Proper citation: Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform (RRID:SCR_023757) Copy   

•   Source: SciCrunch Registry

https://www.ebsco.com/products/research-databases?f%5B0%5D=database_full_text%3Afull%20text

Full text research database for dental practitioners and researchers. Offers top dental and oral sciences journals commonly purchased by dental schools and related institutions.

Proper citation: EBSCO Dentistry and Oral Sciences Source (RRID:SCR_022705) Copy   

•   Source: SciCrunch Registry

http://www.intego.be

Computerized morbidity registration network in Belgium based on general practice data.Contains demographic, clinical, biomedical, and prescription data, registered with computer generated keywords in electronic health record.

Proper citation: Intego (RRID:SCR_022563) Copy   

•   Source: SciCrunch Registry

https://www.scopus.com/

Abstract and indexing database with full text links that is produced by Elsevier Co. Combines expertly curated abstract and citation database with enriched data and linked scholarly literature across wide variety of disciplines.

Proper citation: Scopus (RRID:SCR_022559) Copy   

•   Source: SciCrunch Registry

https://ratgenes.org/C-gord/

Center maintains database containing all phenotypical data collected by Research Projects and Ancillary collaborators, as well as RNAseq and genotype data.Provides access to data generated by NIDA center for genetic studies of drug abuse in outbred rats and additional research projects that use N/NIH heterogeneous stock (HS) outbred rats and Center’s core services that support genotyping and analysis.Alignes data generated in HS rats with FAIR (Findable, Accessible, Interoperative, Reusable) data management principles.Provides structured access to data associated with research papers produced by research projects that use HS rats.

Proper citation: C-GORD (RRID:SCR_021866) Copy   

•   Source: SciCrunch Registry

https://adastra.autosome.ru/zanthar

Landscape of allele specific transcription factor binding in human genome. Creators conducted meta analysis of ChIP-Seq experiments and assembled database of allele specific binding events listing more than half million entries at nearly 270 thousand single nucleotide polymorphisms for several hundred human transcription factors and cell types.

Proper citation: Allelic Dosage corrected Allele Specific human Transcription factor binding sites (RRID:SCR_021863) Copy   

•   Source: SciCrunch Registry

https://www.mongodb.com/

General purpose, document based, distributed database built for modern application developers and for the cloud. Offers Community and Enterprise version of database.MongoDB Community is source available and free to use edition of MongoDB. MongoDB Enterprise is available as part of MongoDB Enterprise Advanced subscription and includes comprehensive support for your MongoDB deployment. MongoDB Enterprise also adds enterprise-focused features such as LDAP and Kerberos support, on-disk encryption, and auditing.MongoDB also offers Atlas,hosted MongoDB Enterprise service option in cloud which requires no installation overhead and offers free tier to get started.

Proper citation: MongoDB (RRID:SCR_021224) Copy   

•   Source: SciCrunch Registry

https://www.grnpedia.org/trrust/

TRUSST is reference database of human transcriptional regulatory interactions.TRRUST v2 is manually curated expanded reference database of human and mouse transcriptional regulatory interactions.

Proper citation: Transcriptional Regulatory Relationships Unrevealed by Sentence based Text mining database (RRID:SCR_022554) Copy   

•   Source: SciCrunch Registry

https://www.grnpedia.org/trrust/Network_search_form.php

Reference database of human transcriptional regulatory interactions. Manually curated database of human and mouse transcriptional regulatory networks.

Proper citation: TTRUST (RRID:SCR_022490) Copy   

•   Source: SciCrunch Registry

http://isyslab.info/NeuroPep/

Comprehensive resource of neuropeptides, which holds non-redundant neuropeptide entries. Data collected from resources including MEDLINE abstracts, full papers, UniProt,database at www.neuropeptides.nl and Neuropedia. Contains detailed annotations for each entry, including source organisms, tissue specificity, families, names, post-translational modifications, 3D structures and literature references. Amino acid compositions, isoelectric points, molecular weight and other physicochemical properties of peptides are also provided. Search database with keywords such as sequence, name, family, etc.,User friendly web tools like browsing, sequence alignment and mapping are also integrated.Users can submit new entries online. Each new entry is validated before incorporating it.

Proper citation: NeuroPep (RRID:SCR_023102) Copy   

•   Source: SciCrunch Registry

http://www.timetree.org

Public knowledge base for information on evolutionary timescale of life. Data from thousands of published studies are assembled into searchable tree of life scaled to time.

Proper citation: TimeTree (RRID:SCR_021162) Copy   

•   Source: SciCrunch Registry

http://opig.stats.ox.ac.uk/webapps/newsabdab/sabdab/

Database containing all antibody structures available in the PDB, annotated and presented in consistent fashion.Each structure is annotated with number of properties including experimental details, antibody nomenclature (e.g. heavy-light pairings), curated affinity data and sequence annotations. You can use the database to inspect individual structures, create and download datasets for analysis, search the database for structures with similar sequences to your query, monitor the known structural repetoire of antibodies.

Proper citation: Structural Antibody Database (RRID:SCR_022096) Copy   

•   Source: SciCrunch Registry

https://grch38.warehouse.cmh.edu/

Database of non identifiable, summary data on all variants identified in Childrens Mercy Genomic Medicine Center, including project data of Genomic Answers for Kids. Database can be searched and viewed with genomic annotations, population database cross references such as ClinVar, gnomAD and dbSNP, ACMG curations and local allele frequency. Variant data are available for bulk download as annotated VCF.

Proper citation: CMH Variant Warehouse (RRID:SCR_021839) Copy   

•   Source: SciCrunch Registry

https://github.com/clinwiki-org/clinwiki

Clinical trials database.

Proper citation: ClinWiki (RRID:SCR_021297) Copy   

•   Source: SciCrunch Registry

https://www.girinst.org/repbase/

Database of repetitive DNA elements.Database of prototypic sequences representing repetitive DNA from different eukaryotic species. Used in genome sequencing projects worldwide as reference collection for masking and annotation of repetitive DNA.

Proper citation: Repbase (RRID:SCR_021169) Copy   

•   Source: SciCrunch Registry

https://www.pgscatalog.org/

Open database of polygenic scores and relevant metadata required for accurate application and evaluation. Used for reproducibility and systematic evaluation.

Proper citation: Polygenic Score Catalog (RRID:SCR_023558) Copy   

•   Source: SciCrunch Registry

http://www.meduniwien.ac.at/allfam/

Database for classifying allergenic proteins into protein families.You can browse lists of allergen families restricted by allergen source (plants, animals, fungi, bacteria) and route of exposure (inhalation, ingestion etc.) or search for specific allergens, sources or protein families. Every allergen family entry is linked to description of biochemical properties and allergological significance of family members as well as list of key references related to this family.

Proper citation: AllFam (RRID:SCR_021276) Copy   

•   Source: SciCrunch Registry