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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
https://industry.nikon.com/en-us/products/x-ray-ct/xt-h-225-xt-h-320/
Provides insight into the inside of components and specimens, allowing users to visualize, analyze and measure complex internal geometry as well as surfaces, all non-destructively. Versatile microfocus CT system for high resolution inspection in R&D and failure analysis of components ranging from tiny plastic connectors up to aluminum castings.
Proper citation: Nikon: XT H 225 ST uCT system (RRID:SCR_023687) Copy
Provides development and manufacture of high performance scientific digital cameras, microscopy systems and spectrographs for academic, industrial and government applications.
Proper citation: Andor (RRID:SCR_023609) Copy
https://www.bruker.com/en.html
Bruker Daltonics is subsidary of Bruker Corporation American. Bruker is manufacturer of scientific instruments for molecular and materials research, as well as for industrial and applied analysis.
Proper citation: Bruker Daltonics (RRID:SCR_023608) Copy
https://www.10xgenomics.com/instruments/xenium-analyzer
Xenium Analyzer offers subcellular profiling of 100s to 1,000s of RNA targets alongside multiplexed protein, in fresh, frozen or FFPE tissue.
Proper citation: 10x Genomics: Xenium Analyzer (RRID:SCR_023910) Copy
https://github.com/eMetaboHUB/Forum-LiteraturePropagation
Method extending ’guilt by association’ principle to literature information by using Bayesian framework to suggest diseases associated with overlooked metabolites.
Proper citation: Forum Literature Propagation (RRID:SCR_023874) Copy
Spatial biology company offering solutions for high parameter tissue analysis from discovery through clinical and translational research, enabling development of more precise therapies for immuno-oncology and other drug development applications.
Proper citation: Akoya Biosciences (RRID:SCR_023774) Copy
https://www.akoyabio.com/phenocycler/instrument/
PhenoCycler-Fusion system is integrated platform combining automated, ultrahigh-plex cycling platform, Akoya PhenoCycler, and its high-speed imaging platform, PhenoImager (formerly Phenoptics), into end-to-end, integrated workflow.
Proper citation: Akoya Biosciences: PhenoCycler-Fusion (RRID:SCR_023773) Copy
Pipet-Lite™ XLS+ manual single-channel pipette, 100-1000 μL, uses LTS™ LiteTouch™ tips. Accurate and precise, ergonomic, autoclavable liquid end, rugged and durable (L-1000XLS+)
Proper citation: Rainin: Pipet-Lite LTS Pipette L-1000XLS+ (RRID:SCR_023894) Copy
Pipet-Lite™ XLS+ manual single-channel pipette, 20-200 μL, uses LTS™ LiteTouch™ tips. Accurate and precise, ergonomic, autoclavable liquid end, rugged and durable (L-200XLS+)
Proper citation: Rainin: Pipet-Lite LTS Pipette L-200XLS+ (RRID:SCR_023892) Copy
https://www.nikon.com/company/news/2018/0319_nsim_s_01.html
Microscope enables super solution imaging of live cells at ten times the speed of conventional SIM. Powered by ECLIPSE Ti2-E Inverted Research Microscope, taking advantage of its advanced optics, stability and features.
Proper citation: Nikon: N-SIM S Super Resolution Microscope (RRID:SCR_023803) Copy
https://www.hitachi-keu.com/en-gb/iv/hv-f203gvscl.html
High resolution 1/1.8" 3 CCD Progressive Scan Color Camera with 1600 x 1200 pixel (UXGA) that is installed in the ZEISS Axioscan Z1 slide scanner. Integrated functions include electronic shutter from 1/30s to 1/100000s, Long term Integration up to 4s, AGC, external Trigger, Auto Shading, 6 Colour Masking, Frame-On-Demand Function, White Balance, AGC, Black Level Adjustment and Partial Scan Function.
Proper citation: Hitachi: 16-bit 3-CCD color camera HV-F203GV / HV-F203SCL (RRID:SCR_023888) Copy
Microplate reader to measure absorbance, fluorescence and luminescence.
Proper citation: Molecular Devices: SpectraMax iD3 multi-mode microplate reader (RRID:SCR_023920) Copy
https://www.sanger.ac.uk/science/tools/caf
Software tools for manipulating Common Assembly Format files text format for describing sequence assemblies,that can be downloaded from the Sanger ftp site.
Proper citation: caftools (RRID:SCR_023982) Copy
http://ingenium.home.xs4all.nl/dicom.html
Software for DICOM training and testing,Demonstration and research image archives,Image format conversion from scanner with DICOM network access,DICOM image viewing and slide making, DICOM image selection, (limited) editing, and splitting and merging of series, Advanced scriptable image modification, filtering, forwarding and conversion, DICOM caching and archive merging, DICOM web access for viewing and data management (scriptable),Connection to Lua IDE for all sorts of DICOM manipulation.
Proper citation: Conquest DICOM (RRID:SCR_023993) Copy
https://github.com/pennsignals/chime
Software designed to assist hospitals and public health officials with understanding hospital capacity needs as they relate to the COVID pandemic. CHIME enables capacity planning by providing estimates of total daily and running totals of inpatient hospitalizations, ICU admissions, and patients requiring ventilation.
Proper citation: CHIME (RRID:SCR_023987) Copy
https://nanostring.com/products/cosmx-spatial-molecular-imager/
Integrated system with mature cyclic fluorescent in situ hybridization chemistry, resolution imaging readout, interactive data analysis and visualization software. Analysis platform to provide spatial multiomics with formalin-fixed paraffin-embedded and fresh frozen tissue samples at cellular and subcellular resolution. CosMx SMI enables rapid quantification and visualization of up to 1,000 RNA and 64 validated protein analytes. Spatial single-cell imaging platform that drives deeper insights for cell atlasing, tissue phenotyping, cell-cell interactions, cellular processes, and biomarker discovery.
Proper citation: NanoString: CosMx Spatial Molecular Imager (RRID:SCR_023909) Copy
https://www.sunchrom.de/en/products/maldi-ms-sample-preparation-2/suncollect-maldi-sprayer.html
For tissue preparation for Imaging MALDI. The sprayer can handle fresh-frozen or FFPE tissue sections. Enzymes such as trypsin can be applied to the tissue for in situ digestion. Sprayer offers the following key features: Automated delivery of matrix, enzyme or derivatization solutions; 6 port PEEK valve with low dead-volume to minimise liquid usage; Automatic self-cleaning function at end of matrix application; 100 % biocompatible; Compact unit 36 x 49 x 40 cm (w,d,h);Preprogrammed spray protocols;Up to 8 sample slides can be sprayed simultaneously;Easy to use software.
Proper citation: SunCollect MALDI Sprayer (RRID:SCR_023907) Copy
https://www.sunchrom.de/en/products/maldi-ms-sample-preparation-2/suncollect-cf-spotter.html
CF-Spotter for MALDI-TOF microbial identification. Enables fast, efficient and reproducible sample preparation for MALDI-TOF microbial identification system and relieves your laboratory staff from tedious and time-consuming pipetting. Due to the non-contact application of the solutions, there is no carryover of the samples and the costs for consumables such as pipette tips are eliminated.
Proper citation: SunChrom: SunCollect CF Spotter (RRID:SCR_023906) Copy
https://www.sunchrom.de/en/products/maldi-ms-sample-preparation-2/sundigest.html
SunDigest incubation device provides fully software controlled and highly reproducible digestion process under standardized conditions. Feature includes Temperatures precisely adjustable between 4 °C and 50 °C; On-Tissue digestion process under optimal humidity; Preservation of spatial resolution; High performance digestion at 50 °C; Full digestion process control.Essential for reproducible results.
Proper citation: SunChrom: SunDigest Incubator (RRID:SCR_023905) Copy
https://www.sunchrom.de/en/products/maldi-ms-sample-preparation-2/suntissueprep.html
System automates all tissue section preparation steps that were previously performed manually. Deparaffinization, rehydration, antigen-retrieval and pH-adjustment steps are performed efficiently, reliably and fully automated.
Proper citation: SunChrom: SunTissuePrep Tissue Section Preparation System (RRID:SCR_023904) Copy
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