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https://www.mc.vanderbilt.edu/victr/dcc/projects/acc/index.php/Main_Page
A national consortium formed to develop, disseminate, and apply approaches to research that combine DNA biorepositories with electronic medical record (EMR) systems for large-scale, high-throughput genetic research. The consortium is composed of seven member sites exploring the ability and feasibility of using EMR systems to investigate gene-disease relationships. Themes of bioinformatics, genomic medicine, privacy and community engagement are of particular relevance to eMERGE. The consortium uses data from the EMR clinical systems that represent actual health care events and focuses on ethical issues such as privacy, confidentiality, and interactions with the broader community.
Proper citation: eMERGE Network: electronic Medical Records and Genomics (RRID:SCR_007428) Copy
http://bioinfo3d.cs.tau.ac.il/FlexProt/
FlexProt detects the optimal flexible structural alignment of a pair of protein structures. The first structure is assumed to be rigid, while in the second structure potential flexible regions are automatically detected.
Proper citation: FlexProt: flexible protein alignment (RRID:SCR_007306) Copy
Project focused on cerebral aneurysms and provides integrated decision support system to assess risk of aneurysm rupture in patients and to optimize their treatments. IT infrastructure has been developeded for management and processing of vast amount of heterogeneous data acquired during diagnosis.
Proper citation: aneurIST (RRID:SCR_007427) Copy
A computer-readable format for representing models of biochemical reaction networks in software. It''s applicable to models of metabolism, cell-signaling, and many others. This website is the portal for the global SBML development effort; you can find information about all aspects of SBML.
Proper citation: SBML (RRID:SCR_007422) Copy
http://www.uni-regensburg.de/index.html.en
Public research university located in the medieval city of Regensburg, Bavaria, a city that is listed as a UNESCO World Heritage Site.
Proper citation: University of Regensburg; Bavaria; Germany (RRID:SCR_007423) Copy
http://purl.bioontology.org/ontology/CPRO
A uniform core set of data elements (whose formal semantics are captured in OWL) for use in a Computer-Based Patient Record (CPR)
Proper citation: Computer-Based Patient Record Ontology (RRID:SCR_007540) Copy
The GPCRDB is a molecular-class information system that collects, combines, validates and stores large amounts of heterogenous data on G protein-coupled receptors (GPCRs). :The GPCRDB contains data on sequences, ligand binding constants and mutations. In addition, t he system provides computationally derived data such as multiple sequence alignments, homology models, and a series of query and visualization tools. :The GPCRDB is designed to be a data storage medium, as well as a tool to aid biomedical scientists with answering questions by offering a single point of access to many types of data that are integrated and visualized in a user-friendly way. Although most parts of the GPCRDB are self-explanatory, if you have not used this resource before it is adviced that you to take a look at the usage page. Sponsors: This resource is supported by Organon and Unilever, and the NIH. Keywords: G protein, Coupled, receptor, Molecular, Heterogenous, Data, Sequence, Ligand, Mutation, Computational, Software, Alignment, Homology, Model, Visualization, Tool, Biomedical, Scientist, Integration,
Proper citation: G Protein-Coupled Receptor Data Base (RRID:SCR_007419) Copy
http://pharmacy.uh.edu/fs/bsps/index.php
University of Houston College of Pharmacy Bachelor of Science in the Pharmaceutical Sciences (B.S.PS) is a four-year undergraduate degree program for students interested in pursuing health-related careers. The purpose of the B.S.PS program is to provide undergraduate students with educational experiences and training in the pharmaceutical and related health sciences. The pharmaceutical sciences include medicinal chemistry, pharmaceutics, pharmacology, toxicology, health administration and pharmacokinetics. This program will also prepare students for professional and advanced degrees in healthcare.
Proper citation: University of Houston College of Pharmacy (RRID:SCR_007459) Copy
A French-language university with an international reputation. Firmly committed to research and creation, it offers more than 300 programs of study.
Proper citation: University of Quebec in Montreal; Quebec; Canada (RRID:SCR_007337) Copy
https://www.kent.edu/neuroscience
Neuroscience is dedicated to understanding how the brain and nervous system function in health, disease and repair. Neuroscience research at Kent State University is supported by over 50 faculty members from numerous departments and disciplines. Our researchers have a wide range of expertise including behavioral neuroscience, sensory neuroscience, developmental neuroscience and neurodegenerative diseases.
Proper citation: Kent State University Department of Neuroscience (RRID:SCR_007458) Copy
Next generation sequencing and genotyping services provided to investigators working to discover genes that contribute to disease. On-site statistical geneticists provide insight into analysis issues as they relate to study design, data production and quality control. In addition, CIDR has a consulting agreement with the University of Washington Genetics Coordinating Center (GCC) to provide statistical and analytical support, most predominantly in the areas of GWAS data cleaning and methods development. Completed studies encompass over 175 phenotypes across 530 projects and 620,000 samples. The impact is evidenced by over 380 peer-reviewed papers published in 100 journals. Three pathways exist to access the CIDR genotyping facility: * NIH CIDR Program: The CIDR contract is funded by 14 NIH Institutes and provides genotyping and statistical genetic services to investigators approved for access through competitive peer review. An application is required for projects supported by the NIH CIDR Program. * The HTS Facility: The High Throughput Sequencing Facility, part of the Johns Hopkins Genetic Resources Core Facility, provides next generation sequencing services to internal JHU investigators and external scientists on a fee-for-service basis. * The JHU SNP Center: The SNP Center, part of the Johns Hopkins Genetic Resources Core Facility, provides genotyping to internal JHU investigators and external scientists on a fee-for-service basis. Data computation service is included to cover the statistical genetics services provided for investigators seeking to identify genes that contribute to human disease. Human Genotyping Services include SNP Genome Wide Association Studies, SNP Linkage Scans, Custom SNP Studies, Cancer Panel, MHC Panels, and Methylation Profiling. Mouse Genotyping Services include SNP Scans and Custom SNP Studies.
Proper citation: Center for Inherited Disease Research (RRID:SCR_007339) Copy
The Current Population Survey (CPS) is a monthly survey of about 50,000 households conducted by the U.S. Census Bureau for the Bureau of Labor Statistics for more than 50 years. It provides a comprehensive body of data on the labor force, employment, unemployment, and persons not in the labor force. The CPS is the primary source of information on the labor force characteristics of the U.S. population. The sample is scientifically selected to represent the civilian noninstitutional population. Respondents are interviewed to obtain information about the employment status of each member of the household 15 years of age and older. However, published data focus on those ages 16 and over. The sample provides estimates for the nation as a whole and serves as part of model-based estimates for individual states and other geographic areas. Estimates obtained from the CPS include employment, unemployment, earnings, hours of work, and other indicators. They are available by a variety of demographic characteristics including age, sex, race, marital status, and educational attainment. They are also available by occupation, industry, and class of worker. Supplemental questions to produce estimates on a variety of topics including school enrollment, income, previous work experience, health, employee benefits, and work schedules are also often added to the regular CPS questionnaire. CPS data are used by government policymakers and legislators as important indicators of our nations economic situation and for planning and evaluating many government programs. They are also used by the press, students, academics, and the general public.
Proper citation: Current Population Survey (RRID:SCR_007334) Copy
The Neuroscience Training Program at The Johns Hopkins University School of Medicine addresses the broad areas encompassed by modern neuroscience. The purpose of the Program is to train doctoral students for independent research and teaching in neuroscience. It is the goal of the Program to ensure that candidates for the Ph.D. and M.D./Ph.D. degrees obtain a background covering molecular/cellular and systems/cognitive approaches to neuroscience, as well as receive training that brings them to the forefront of research in their particular area of interest. A series of core courses in neuroscience, along with advanced electives, seminar series, laboratory rotations and original independent dissertation research form the Neuroscience Graduate Training Program. The Neuroscience Training Program and the Neuroscience Department are among the oldest in the United States and date back to 1980. The faculty of the Neuroscience Training Program have trained about 250 Ph.D. and M.D./Ph.D. students and 500 postdoctoral fellows over the past ten years. All doctoral candidates receive full tuition remission and a stipend. Research within the department ranges from investigating the development of the nervous system, synaptic plasticity and the molecular and cellular mechanisms of learning and memory to the neural basis of higher brain function such as perception and decision-making. Our faculty are also at the forefront of research into the molecular mechanisms of neurological and psychiatric diseases, including Parkinson''s, Alzheimer''s'' disease, amyotrophic lateral sclerosis (ALS), schizophrenia, depression, drug addiction, mental retardation and autism.
Proper citation: Johns Hopkins University Neuroscience (RRID:SCR_007455) Copy
http://jaxmice.jax.org/list/ra56.html
This Resource maintains and distributes mouse models for neural tube defects. Current Neural Tube Defect stains include: * Repository- Live: 129(Cg)-Foxg1
Proper citation: JAX Mice: Neural Tube Defects (RRID:SCR_007333) Copy
http://healthsciences.howard.edu/education/colleges/medicine/departments/pharmacology/Overview
The Department of Pharmacology offers programs leading to the Master of Science and Doctor of Philosophy degrees. The primary objective of these programs is to prepare candidates for research and teaching careers. The first few semesters are devoted primarily to core course work designed to give the student a broad background in the fundamental theories and techniques of pharmacology.During this time, the student gains exposure to methods for the solution of research problems by working in the laboratories of various faculty members culminating in a selection of a thesis advisor. The department has spacious laboratories equipped with modern instruments that are used by both faculty and students in such research areas as biochemical, molecular, cardiovascular, autonomic, clinical, and neuropharmacology, drug metabolism, cancer research and toxicology.
Proper citation: Howard University Washington D.C Department of Pharmacology (RRID:SCR_007454) Copy
http://ki.se/ki/jsp/polopoly.jsp?l=en&d=4329
Department of Clinical Neuroscience at Karolinska Institutet conducts research and teaching regarding the function of the brain - from a molecular level to the effect on society. This activity is closely integrated with medical clinics within Stockholm.
Proper citation: Karolinska Institute Department of Clinical Neuroscience (RRID:SCR_007456) Copy
http://sourceforge.net/projects/taipan/
A fast hybrid short-read assembly tool.
Proper citation: Taipan (RRID:SCR_007330) Copy
http://www.nia.nih.gov/research/dab/aged-rodent-tissue-bank-handbook/tissue-arrays
Offer high-throughput analysis of tissue histology and protein expression for the biogerontology research community. Each array is a 4 micron section that includes tissue cores from multiple tissues at multiple ages on one slide. The arrays are made from ethanol-fixed tissue and can be used for all techniques for which conventional tissue sections can be used. Ages are chosen to span the life from young adult to very old age. (available ages: 4, 12, 18, 24 and 28 months of age) Images of H&E stained punches are available for Liver, Cardiac Muscle, and Brain. The NIA aged rodent tissue arrays were developed with assistance from the National Cancer Institute (NCI) Tissue Array Research Program (TARP), led by Dr. Stephen Hewitt, Director. NCI TARP contains more information on tissue array construction, protocols for using arrays, and references. Preparation and Product Description Tissue arrays are prepared in parallel from different sets of animals so that experiments can be conducted in duplicate, with each array using unique animals with a unique product number. The product descriptions page describes each array, including: * Strain * Gender * Ages * Tissues * Animal Identification Numbers
Proper citation: Aged Rodent Tissue Arrays (RRID:SCR_007332) Copy
http://fireball.drexelmed.edu/birnlex/OWLdocs/
THIS RESOURCE IS NO LONGER IN SERVICE, documented on April 26, 2011. Lexicon that provides entities for data and database annotation for the BIRN project, covering anatomy, disease, data collection, project management and experimental design. These sources may include complex image databases, such as data from structural and functional magnetic resonance imaging (MRI) on human subjects involved in studies on Alzheimer''s disease or schizophrenia. The BIRNLex is a specialized vocabulary utilized by BIRN scientists in the context of their research, including common terms for neuroanatomy, molecular species, subject information, behavioral and cognitive processes, experimental practice and design, and the associated elements of primary data provenance required for large-scale data integration across disparate experimental studies.The BIRNLex offers well defined terms from several domains of importance to neuroimaging across scales.
Proper citation: BIRNLex (RRID:SCR_007326) Copy
The establishment of the Neuroscience Center at Dartmouth (NCD) in 2002 has produced a new and unique interdisciplinary group whose mission is to foster collaborative and interactive research and education in the neurosciences. Training opportunities in neuroscience include undergraduate minor/major in Neuroscience, graduate training toward a Ph.D., and postdoctoral training. The NCD draws from the strengths in three key areas: Clinical, Cognitive & Behavioral, and Molecular/Cellular/Systems Neuroscience. It is the vision of its researchers to produce and disseminate new knowledge, and in doing so train and educate the next generation of neuroscientists. Interactions among members of the neuroscience community are enhanced and foster a highly interactive atmosphere through the development of this integrated Center. By promoting multidisciplinary efforts in both basic and applied research, the Center''s scientists will contribute to human health and well being by increasing our understanding of the mechanisms underlying nervous system function, both in health and disease. This will lead to valuable discoveries that translate into novel pharmaceutical agents and therapeutic approaches for the treatment of a variety of central nervous system diseases and disorders. The research facilities are located in Hanover, NH, Lebanon, NH (Dartmouth-Hitchcock Medical Center) and the Veteran Affairs Medical Center in White River Junction, Vt. Research interests comprise a broad range of studies within the neurosciences and provide a wide range of research opportunities for students. In addition, the NCD augments the education of residents and fellow at the clinical level who have academic neuroscience interests.
Proper citation: Dartmouth Medical School Neuroscience (RRID:SCR_007449) Copy
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