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Supplier and servicer of products for expression studies in Xenopus laevis oocytes. Products include overnight delivery of freshly prepared Xenopus laevis oocytes, Cell & Tissue Media necessary during preparation, maintenance, and recording of Xenopus oocytes and lab chemicals. Services for pharmacological studies include heterologous expression and in vitro electrophysiology.
Proper citation: EcoCyte Bioscience (RRID:SCR_014773) Copy
Commercial ogranization which provides molecular and drug discovery software and services to researchers. American software company that develops chemical simulation software for use in pharmaceutical, biotechnology, and materials science research. Provides products ranging from general molecular modeling programs to a full suite of chemical simulation and drug design software, including ligand- and structure-based methods.
Proper citation: Schrodinger (RRID:SCR_014879) Copy
http://www.eyesopen.com/oedocking
Complementary OEDocking tool for virtual screening, it performs a systematic and non-stochastic examination of all possible protein-ligand poses. The software also filters for shape complementarity and chemical feature alignment before selecting and optimizing protein-ligand poses.
Proper citation: FRED - Fast exhaustive docking (RRID:SCR_014885) Copy
Institute dedicated to research in immunology by utilizing the academic and research communities in the La Jolla area as well as technological advances in biomedical research, imaging and analysis. Specific topics include autoimmune disease, cancer, allergies, infectious diseases and inflammation.
Proper citation: La Jolla Institute for Immunology (RRID:SCR_014845) Copy
A public research university in Colchester, Essex, England. The institution has degree programs that span the humanities, social sciences, and health.
Proper citation: University of Essex; England; United Kingdom (RRID:SCR_014725) Copy
Brain research group affiliated with the Nanjing University of Aeronautics and Astronautics (NUAA) in China. The main research interests of iBRAIN include developing methods in machine learning, data mining, neural computation, and related areas for decoding brain functions or recognizing brain disease. Research related code and datasets can be found on the main site.
Proper citation: iBRAIN (RRID:SCR_014691) Copy
http://www.adaptivebiotech.com
Commercial organization which combines high-throughput sequencing and bioinformatics to profile T-cell and B-cell receptors.
Proper citation: Adaptive Biotechnologies (RRID:SCR_014709) Copy
https://www.ebi.ac.uk/efo/webulous/
Server used to create spreadsheets with ontology based data validations. Webulous can process populated templates and transform them into OWL/RDF using design patterns expressed in OPPL. It also has an add-on with Google spreadsheets which supports loading templates from a Webulous server and allows users to submit populated spreadsheets back to the Webulous server for transformation into OWL.
Proper citation: Webulous (RRID:SCR_014825) Copy
An association of various medical entities in Germany. The organization advises on matters and tasks of fundamental and interdisciplinary interest in medicine, develops recommendations and resolutions and represents them at the institutions occupied with such tasks, such as research strategies, education, and postgraduate training.
Proper citation: Association of the Scientific Medical Societies in Germany (RRID:SCR_014716) Copy
https://dogma.ccbb.utexas.edu/
Web-based annotation tool for plant chloroplasts and animal mitochondrial genomes. DOGMA allows the use of BLAST searches against a custom database, and conservation of basepairing in the secondary structure of animal mitochondrial tRNAs to identify and annotate genes.
Proper citation: DOGMA (RRID:SCR_015060) Copy
https://codemeta.github.io/codemeta-generator/
Web application that creates CodeMeta files.
Proper citation: CodeMeta Generator (RRID:SCR_024601) Copy
https://www.softwareheritage.org/
Software Heritage provides service for archiving and referencing historical and contemporary software with focus on human readable source code. The site was unveiled in 2016 by Inria and is supported by UNESCO. The project itself is structured as non‑profit multi‑stakeholder initiative.
Proper citation: Software Heritage (RRID:SCR_024602) Copy
Non-profit, public-private partnership dedicated to bringing together inclusive community committed to advancing engineering biology to address national and global needs. We showcase cutting-edge research in engineering biology, identify pressing challenges and opportunities in research and application, articulate compelling research roadmaps and programs to address them, and provide timely access to other key developments in engineering biology.
Proper citation: Engineering Biology Research Consortium (RRID:SCR_024578) Copy
https://www.eneuro.org/content/10/8/ENEURO.0212-23.2023
Simple, lightweight, and low cost customizable multielectrode array for Local Field Potential recordings. Used to collect LFP data from different brain regions simultaneously in rats. Can be modified to record single unit and multiunit activity in addition to LFP activity using both wired and wireless neural data acquisition systems.
Proper citation: Customizable Multielectrode Array (RRID:SCR_024551) Copy
Software digital library and cyberinfrastructure facilitating discovery and utilization of data and knowledge in published documents.
Proper citation: XDD (RRID:SCR_024434) Copy
https://de.caeonline.com/buy/lab-equipment-and-accessories/tecan-infinite-m200/9076657
TECAN Infinite M200 is laboratory device and accessory for multiplex luminescence and fluorescence applications. Device features automated robotic arm for dispensing samples or reagents onto cuvettes or microplates, as well as range of high speed and throughput sample injection capabilities. Infinite M200 is integrated with TECAN's proven laser-based multi-channel detection technology, to measure multiple biological responses simultaneously. System features graphical user interface to configure instrument for single or multiple sample injection processes. Accommodates range of different cuvette and microplate vessels, suitable for both 1.5ml and 0.2ml tubes as well as plates up to 384 wells. Multichannel optical detector can detect up to four different signals in parallel, with wide range of detection wavelengths. Designed for high-throughput applications with sensitive fluorescence and luminescence. Features automated sample injection unit that enables hands-free operation of 96 or 1,536 up to eight-channel multipoint experiments, providing maximum flexibility. Comes with range of software, including intuitive data collection and analysis interface. Designed with automated calibration settings, providing reliable, accurate and reproducible results.
Proper citation: Tecan: Infinite M200 (RRID:SCR_024560) Copy
https://www.tecan.com/customer-news/tecan-granted-patent-for-revolutionary-nanoquant-plate-2117
Device designed for simultaneous measurement of multiple low volume samples. Consists of 16 precision manufactured quartz optics in user friendly format, offering precise, straightforward absorbance and fluorescence based measurements from sample volumes as low as 2 µl. Combined with Tecan’s Infinite series readers – the Infinite 200 PRO, Infinite F500 and Infinite M1000 PRO – the NanoQuant Plate provides solution for DNA or RNA quantification, allowing detection of concentrations down to 1 ng/µl for wide variety of applications.
Proper citation: Tecan: NanoQuantPlate (RRID:SCR_024561) Copy
https://www.leica-microsystems.com/products/confocal-microscopes/p/leica-tcs-sp8-dls/
Digital LightSheet full confocal with gentle single plane illumination microscope for easy light sheet imaging. TwinFlect mirror deflects illuminating light sheet at 90° angle, which allows integration of illumination and detection beam path into vertical axis of every inverted, Leica TCS SP8 confocal.
Proper citation: Leica: TCS SP8 DLS LightSheet microscope (RRID:SCR_024563) Copy
https://diagnostics.roche.com/ch/de/products/instruments/cobas-c-311-ins-2043.html
Autoanalyzer is standalone system that provides consolidated testing from range of clinical chemistry applications. Allows determination of sodium, potassium and chloride in serum, plasma and urine using ion selective electrodes. Measurement of HbA1c levels in whole blood can also be performed.
Proper citation: Roche: Cobas C311 (RRID:SCR_024559) Copy
https://playbook-workflow-builder.cloud/playbooks
Web based platform that facilitates knowledge resolution by enabling users to traverse growing network of input datasets, semantically annotated API endpoints, and data visualization tools contributed by the ecosystem. Via user friendly web based user interface, workflows can be constructed from these building blocks without technical expertise.
Proper citation: Playbook Workflow Builder (RRID:SCR_024540) Copy
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