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https://ebrains.eu/service/quicknii-and-visualign

EBRAINS service for image registration. Spatially register mouse and rat serial 2D brain images to 3D reference atlases.

Proper citation: QuickNII and VisuAlign (RRID:SCR_022818) Copy   

•   Source: SciCrunch Registry

https://scialli.utk.edu/

Organization mission is to expand cooperative ventures in research with Oak Ridge National Laboratory and enhance science and engineering research programs at University of Tennessee. Organization is affiliated with Tennessee Center of Excellence. Funding resource.

Proper citation: Science Alliance (RRID:SCR_023040) Copy   

•   Source: SciCrunch Registry

https://sufuorg.com/home.aspx

Organization to optimize the care of women, men, and children with lower urinary tract dysfunction and/or pelvic floor disorders through education, research and involvement in health care policy. To improve the art and science of Urology through basic and applied clinical research in urodynamics and neurourology, voiding function and dysfunction, female urology and pelvic floor dysfunction, and to disseminate and teach these concepts.

Proper citation: Society of Urodynamics, Female Pelvic Medicine and Urogenital Reconstruction (SUFU) (RRID:SCR_022874) Copy   

•   Source: SciCrunch Registry

https://www.iveindhoven.com/en/article/reichert-jung-ultracut-e-ultramicrotome/

Reichert Jung Ultracut E, article number 131-960, is used to cut ultrathin and semithin sections of resin embedded samples for electron microscopy.

Proper citation: Ultracut: E ultramicrotome (RRID:SCR_022980) Copy   

•   Source: SciCrunch Registry

https://www.bertin-technologies.com/product/sample-preparation-homogenizers/precellys24-tissue-homogenizer/

The Precellys 24 homogenizer with automatic tube locking system with the ability to process up to 24 tubes simultaneously., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: Bertin Technologies: Precellys 24 tissue homogenizer (RRID:SCR_022979) Copy   

•   Source: SciCrunch Registry

https://www.inscopix.com/nvoke

Miniature microscope system that integrates in vivo cellular resolution calcium imaging with simultaneous or sequential optogenetic manipulation to causally link neural circuit activity with behavior.

Proper citation: iNSCOPIX: nVoke System (RRID:SCR_023028) Copy   

•   Source: SciCrunch Registry

http://www.bioconductor.org/packages/2.14/bioc/html/GLAD.html

Software for analysis of array CGH data: detection of breakpoints in genomic profiles and assignment of a status (gain, normal or loss) to each chromosomal regions identified.

Proper citation: GLAD (RRID:SCR_001284) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/projects/bycom/

A software which can perform methylcytosine calling from BS-seq (WGBS and RRBS), and permits either unmapped reads (FASTQ) or mapped reads (SAM/BAM) to be used as the input data. Certain SNPs (C>A/G) can also be selected in the output.

Proper citation: Bycom (RRID:SCR_000659) Copy   

•   Source: SciCrunch Registry

https://github.com/plaisier-lab/OncoMerge

Software tool to integrate somatic mutation types into comprehensive integrated somatic mutation matrix for downstream analyses.Somatic mutation integration platform that tames allelic heterogeneity, discovers causal mutations, integrates binary PAM and fusion with quantitative CNA data types, and overcomes known obstacles in cancer genetics. Used for systematic integration of protein affecting mutations, gene fusions, and copy number alterations into comprehensive somatic mutational profile.

Proper citation: OncoMerge (RRID:SCR_023079) Copy   

•   Source: SciCrunch Registry

http://prime.psc.riken.jp/compms/msdial/main.html

Software tool for data independent MS/MS deconvolution for comprehensive metabolome analysis. Universal program for untargeted metabolomics that supports multiple instruments (GC/MS, GC/MS/MS, LC/MS, and LC/MS/MS) and MS vendors (Agilent, Bruker, LECO, Sciex, Shimadzu, Thermo, and Waters). Used for untargeted metabolomics and lipidomics supporting any type of chromatography/mass spectrometry methods.

Proper citation: MS-DIAL (RRID:SCR_023076) Copy   

•   Source: SciCrunch Registry

https://www.wyatt.com/products/instruments/microOptilab-uhplc-refractometer-sec-mals.html

Refractive Index detector that offers high sensitivity and 50 times dynamic range of every other UHPLC RI detector. Like Optilab, it offers temperature control both above and below ambient, as well as measurement of absolute refractive index of solvents.

Proper citation: Wyatt: microOptilab Refractometer (RRID:SCR_020891) Copy   

•   Source: SciCrunch Registry

https://www.wyatt.com/products/instruments/field-flow-fractionation-systems.html

Field flow fractionation device supports both Hollow Fiber Flow FFF HF5 and Asymmetric Flow FFF AF4 in one instrument. Utilizing one HPLC stack and one set of Wyatt detectors, DualTec permits automated switching between any two of SEC, AF4 and HF5 separation followed by MALS and or DLS characterization.

Proper citation: Wyatt: Eclipse DualTec Field-Flow Fractionation system (RRID:SCR_020892) Copy   

•   Source: SciCrunch Registry

https://www.wyatt.com/products/instruments/calypso-ii-label-free-biomolecular-interactions.html#calypso-3

Composition-Gradient Multi-Angle Light Scattering machine that characterizes biomolecular interactions, label free and immobolization free. It is able to determine equilibrium dissociation constants self and hhetero association as well as more complex interactions.

Proper citation: Wyatt: Calypso Composition-Gradient Multi-Angle Light Scattering (CG-MALS) (RRID:SCR_020887) Copy   

•   Source: SciCrunch Registry

https://www.waters.com/waters/promotionDetail.htm?id=10192851&locale=en_US

Mass spectrometer with selectivity, in-spectrum dynamic range, speed of analysis, quantitative accuracy and exact mass performance simultaneously, for any UPLC/MS or UPLC/MSE experiment.

Proper citation: Waters: Xevo G2 Mass Spectrometer (RRID:SCR_020885) Copy   

•   Source: SciCrunch Registry

https://www.waters.com/waters/library.htm?locale=en_US&lid=1530738

Micromass (now Waters) Quattro Premier triple quadrupole mass spectrometer operates with an Agilent 1100 HPLC and specializes in quantitative work and selective of targeted analytes including metabolites and other small molecules, and peptides from complex matrices such as serum, tissue, cell culture, and other biological sources.

Proper citation: Waters: Quattro Premier LC/MS (RRID:SCR_020883) Copy   

•   Source: SciCrunch Registry

https://www.research.uky.edu/uploads/zeiss-palm-microcapture-manual

PALM MicroBeam scanning electron microscope for isolating uncontaminated source material simple.

Proper citation: Zeiss: PALM MicroBeam PALM (RRID:SCR_020929) Copy   

•   Source: SciCrunch Registry

https://www.biocompare.com/12104-Equipment/4462209-Axio-Scan-Z1-Slide-Scanner/

Used to digitize specimens with the Axio Scan.Z1 slide scanner to create high-quality virtual slides. Axio Scan.Z1 tackles the most demanding virtual microscopy research tasks as easily as it handles your routine work. The software module ZEN slidescan is designed specifically for the workflow of capturing virtual slides, while ZEN image analysis tools prepare your data accurately. Organize your virtual slides with ZEN browser, the web-based database, then view your data from any location using any operating system , or share virtual microscopy images online with colleagues and organize your projects, even when you are on the go.

Proper citation: Zeiss: Axio Scan.Z1 Slide Scanner (RRID:SCR_020927) Copy   

•   Source: SciCrunch Registry

https://www.fishersci.co.uk/shop/products/stemi-2000-c-stereo-microscope/12807795

Optical stereomicroscope with 7.7:1 zoom range (pancratic system 0.65x to 5.0x) zooms in continuously or with click stop. It has an object field size of 35mm, with an 0.3x attachment lens system permitting object fields of up to 118mm to be viewed.

Proper citation: Zeiss: 2000C Stereomicroscope (RRID:SCR_020924) Copy   

•   Source: SciCrunch Registry

https://www.wyatt.com/products/instruments/optilab-refractive-index-detector.html#optilab-2

Refractometer based on semiconductor photodiode technology and proprietary computer algorithms. Can be used for standard chromatographic applications and measurements such as high concentrations, determination of sample refractive increments dn dc and solvent refractive index.

Proper citation: Wyatt: Optiab Refractometer (RRID:SCR_020897) Copy   

•   Source: SciCrunch Registry

http://www.speciation.net/Database/Instruments/Carl-Zeiss-AG/Supra-25-;i665

Field scanning electron microscope with analytical specimen chamber with choice of optional detectors and accessories. It has 5-axes motorised cartesian stage can handle multiple smaller specimens simultaneously. It can image bulky or irregular shaped specimens.

Proper citation: Zeiss: Supra 25 Field Emission Scanning Electron Microscope (RRID:SCR_020930) Copy   

•   Source: SciCrunch Registry