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https://www.athensresearch.com/
Commercial supplier of bioproducts for studies of inflammation, autoimmune disease, cancer, coronary disease, Alzheimer's Disease and more. These include antibodies, enzymes, coagulation factors, and assay kits.
Proper citation: Athens Research and Technology (RRID:SCR_001079) Copy
http://www.bioconductor.org/packages/2.13/bioc/html/bsseq.html
R package with tools for analyzing and visualizing bisulfite sequencing data.
Proper citation: bsseq (RRID:SCR_001072) Copy
http://www.bioconductor.org/packages/release/bioc/html/MmPalateMiRNA.html
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. Software R package written for analysis of murine palate miRNA two-color expression data.
Proper citation: MmPalateMiRNA (RRID:SCR_001070) Copy
http://www.bioconductor.org/packages/2.10/bioc/html/R453Plus1Toolbox.html
R software toolbox of functions for the analysis of data generated by Roche's 454 sequencing platform. Additional functions are included for quality assurance, annotation and visualization of detected variants, complementing the software tools shipped by Roche with their product. A pipeline for the detection of structural variants is provided.
Proper citation: R453Plus1Toolbox (RRID:SCR_001105) Copy
Commercial antibody supply company that focuses on providing antibodies for research in cardiovascular and atherosclerosis.
Proper citation: Academy Biomedical Company (RRID:SCR_001108) Copy
http://www.bioconductor.org/packages/release/bioc/html/RmiR.html
R package that contains functions to merge microRNA and respective targets using different databases.
Proper citation: RmiR (RRID:SCR_001069) Copy
http://bioinformatics.mdanderson.org/main/BreakFusion
Software package written in Perl and C++ that provides a computational pipeline for identifying gene fusions from RNA-seq data.
Proper citation: BreakFusion (RRID:SCR_001102) Copy
Medical school division of Virginia Commonwealth University.
Proper citation: Virginia Commonwealth University School of Medicine; Virginia; USA (RRID:SCR_001061) Copy
The United States federal government Department of Education, which oversees policies on federal financial aid for education, collecting data and disseminating research, and working to promote key educational discussions and equal access to education.
Proper citation: U.S. Department of Education (RRID:SCR_001060) Copy
https://omictools.com/npebseq-tool
A method for non-parametric, empirical Bayesian-based analysis of RNA-seq count data.
Proper citation: NPEBseq (RRID:SCR_001014) Copy
https://omictools.com/splitseek-tool
THIS RESOURCE IS NO LONGER IN SERVICE, documented September 20, 2016. A program for de novo prediction of splice junctions in RNA-seq data.
Proper citation: SplitSeek (RRID:SCR_001012) Copy
A commercial antibody supplier that specializes in high-quality monoclonal antibodies and antigens for the diagnostic industry.
Proper citation: Hytest (RRID:SCR_001133) Copy
http://www.stat.brown.edu/ZWU/research.aspx
Borrows information across sequences to establish prior distribution of sample variation, so that biological variation can be accounted for even when replicates are not available.
Proper citation: ASC (RRID:SCR_001013) Copy
Commercial antibody supplier and developer for biomedical research. These products are compatible with use in flow cytometry and mass cytometry, immunoprecipitation and chip, western blotting, immunofluorescence microscopy, and quantitative multiplexing.
Proper citation: BioLegend (RRID:SCR_001134) Copy
http://www.bioconductor.org/packages/2.12/bioc/html/jmosaics.html
R software that detects enriched regions of ChIP-seq data sets jointly.
Proper citation: Jmosaics (RRID:SCR_001094) Copy
A C++ application designed for compression of genome collections from the same species.
Proper citation: GDC (RRID:SCR_001007) Copy
Commercial supplier which provides antibodies, assay kits, biomarkers, and proteins.
Proper citation: NewEast Biosciences (RRID:SCR_001129) Copy
http://sourceforge.net/projects/autoassemblyd/
Software which performs local and remote genome assembly by several assemblers based on an XML Template which can replace the large command lines required by most assemblers.
Proper citation: AutoAssemblyD (RRID:SCR_001087) Copy
http://www.genome.jp/kegg/expression/
Database for mapping gene expression profiles to pathways and genomes. Repository of microarray gene expression profile data for Synechocystis PCC6803 (syn), Bacillus subtilis (bsu), Escherichia coli W3110 (ecj), Anabaena PCC7120 (ana), and other species contributed by the Japanese research community.
Proper citation: Kyoto Encyclopedia of Genes and Genomes Expression Database (RRID:SCR_001120) Copy
Public university in Utah, USA that provides undergraduate, master's, post graduate, graduate, and professional degree programs.
Proper citation: University of Utah; Utah; USA (RRID:SCR_001003) Copy
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