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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Nutrition and Obesity Research Centers Resource Report Resource Website 10+ mentions |
Nutrition and Obesity Research Centers (RRID:SCR_004131) | NORC | topical portal, data or information resource, organization portal, disease-related portal, resource, portal | Portal to research centers and core facilities specifically support obesity research and better understand the relationship between health and nutrition. | obesity core facility, obesity portal, obesity research center |
is listed by: NIDDK Information Network (dkNET) is listed by: Diabetes Research Centers is affiliated with: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases has organization facet: Boston Nutrition and Obesity Research Centers has organization facet: Nutrition and Obesity Research Centers at Harvard has organization facet: Mid-Atlantic Nutrition Obesity Research Center has organization facet: New York Obesity Nutrition Research Center has organization facet: Pennington Biomedical Research Center Nutrition and Obesity Research Center has organization facet: University of Alabama at Birmingham Nutrition and Obesity Research Center has organization facet: University of California San Francisco Nutrition and Obesity Research Center has organization facet: University of Colorado Anschutz Medical Campus Nutrition and Obesity Research Center has organization facet: University of Michigan Nutrition and Obesity Research Center has organization facet: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center has organization facet: University of Washington Nutrition and Obesity Research Center has organization facet: Washington University St. Louis Nutrition Obesity Research Center |
Obesity, Nutrition-related disease, Eating disorder, Anorexia nervosa, AIDS, Cancer | NIDDK RFA-DK16-006 | Available to the research community | nlx_158684 | SCR_004131 | 2026-08-13 09:26:54 | 46 | ||||||
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PDBe - Protein Data Bank in Europe Resource Report Resource Website 50+ mentions |
PDBe - Protein Data Bank in Europe (RRID:SCR_004312) | PDBe | data or information resource, database, service resource, data repository, storage service resource | The European resource for the collection, organization and dissemination of data on biological macromolecular structures. In collaboration with the other worldwide Protein Data Bank (wwPDB) partners - the Research Collaboratory for Structural Bioinformatics (RCSB) and BioMagResBank (BMRB) in the USA and the Protein Data Bank of Japan (PDBj) - they work to collate, maintain and provide access to the global repository of macromolecular structure data. The main objectives of the work at PDBe are: * to provide an integrated resource of high-quality macromolecular structures and related data and make it available to the biomedical community via intuitive user interfaces. * to maintain in-house expertise in all the major structure-determination techniques (X-ray, NMR and EM) in order to stay abreast of technical and methodological developments in these fields, and to work with the community on issues of mutual interest (such as data representation, harvesting, formats and standards, or validation of structural data). * to provide high-quality deposition and annotation facilities for structural data as one of the wwPDB deposition sites. Several sophisticated tools are also available for the structural analysis of macromolecules. | x-ray, nmr, cryo-em, hybrid method, dna, protein, rna, sugar, ligand, virus, compound, fold, enzyme, 3d spatial image, structure, macromolecule, protein-protein interaction, gold standard, bio.tools |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: re3data.org is listed by: bio.tools is listed by: Debian is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is related to: DNA DataBank of Japan (DDBJ) is related to: EMDataResource.org is related to: Worldwide Protein Data Bank (wwPDB) is related to: Biological Magnetic Resonance Data Bank (BMRB) is related to: DNA DataBank of Japan (DDBJ) is related to: Worldwide Protein Data Bank (wwPDB) is related to: PDBj - Protein Data Bank Japan is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) has parent organization: European Bioinformatics Institute is parent organization of: Electron Microscopy Data Bank at PDBe (MSD-EBI) works with: MOLEonline |
European Molecular Biology Laboratory; Heidelberg; Germany ; Wellcome Trust ; BBSRC ; NIH ; European Union ; MRC ; CCP4 |
PMID:21045060 PMID:21460450 PMID:19858099 |
r3d100012791, biotools:pdbe, nlx_32372 | https://bio.tools/pdbe, https://doi.org/10.17616/R3J226 | SCR_004312 | Protein DataBank Europe, Protein DataBank in Europe, PDBe, Protein Data Bank in Europe, Protein Data Bank Europe, Macromolecular Structure Database | 2026-08-13 09:26:57 | 55 | |||||
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NIMH Data Archive Resource Report Resource Website 100+ mentions |
NIMH Data Archive (RRID:SCR_004434) | NDA | data or information resource, database, service resource, data repository, storage service resource | The National Institute of Mental Health Data Archive (NDA) makes available human subjects data collected from hundreds of research projects across many scientific domains. Research data repository for data sharing and collaboration among investigators. Used to accelerate scientific discovery through data sharing across all of mental health and other research communities, data harmonization and reporting of research results. Infrastructure created by National Database for Autism Research (NDAR), Research Domain Criteria Database (RDoCdb), National Database for Clinical Trials related to Mental Illness (NDCT), and NIH Pediatric MRI Repository (PedsMRI). | afni brik, ascii, bshort, bfloat, connectome file format, cifti, clinical neuroinformatics, cor, dicom, imaging genomics, inc, minc2, nifti, os independent, philips par/rec, tex, vrml, phenotype, neuroimaging, genomic, gender, male, female, dti, fmri, mri, spectroscopy, eeg, microarray, snp, cnv, next-generation sequencing, gene regulation, gene expression, genotyping, pedigree, clinical assessment, FASEB list |
uses: HED Tags is used by: National Database for Clinical Trials related to Mental Illness is used by: RDoCdb is used by: NIH Heal Project is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: re3data.org is related to: National Database for Clinical Trials related to Mental Illness is related to: RDoCdb has parent organization: National Institute of Mental Health hosts: GUID Tool |
Autism, Autism spectrum disorder, Asperger Syndrome, Normal control, Sibling control, Parental control, Fragile X syndrome | NIMH ; NINDS ; NIEHS ; NICHD ; Center for Information Technology |
Restricted | nlx_143735, r3d100010717, r3d100012653 | http://www.nitrc.org/projects/ndarportal, https://data-archive.nimh.nih.gov/, https://doi.org/10.17616/R37K63, https://doi.org/10.17616/R3XV5P | http://ndar.nih.gov/ | SCR_004434 | NDAR, National Database for Autism Research, National Institute of Mental Health Data Archive, National Database for Autism Research (NDAR) | 2026-08-13 09:26:59 | 424 | |||
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FigShare Resource Report Resource Website 1000+ mentions |
FigShare (RRID:SCR_004328) | figshare | data or information resource, database, service resource, data repository, storage service resource | Repository for all data, figures, theses, publications, posters, presentations, filesets, videos, datasets, negative data in a citable, shareable and discoverable manner with Digital Object Identifiers. Allows to upload any file format to be made visualisable in the browser so that figures, datasets, media, papers, posters, presentations and filesets can be disseminated in a way that the current scholarly publishing model does not allow. Features integration with ORCID, Symplectic Elements, can import items from Github and is a source tracked by Altmetric.com. Figshare gives users unlimited public space and 1GB of private storage space for free. Data are digitally preserved by CLOCKSS. Supported by Digital Science, a division of Macmillan Publishers Limited, as a community-based, open science project that retains its autonomy. | collection, repository, figure, theses, publication, poster, presentation, fileset, dataset, video, negative, data, FASEB list |
is used by: PrePubMed is used by: NIH Heal Project is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases lists: STRENDA is listed by: FORCE11 is listed by: re3data.org is listed by: DataCite is listed by: FAIRsharing is related to: ImpactStory is related to: Overleaf is related to: FigsharePlus is related to: NIH Figshare Archive is parent organization of: TRAMS |
Digital Science | Free with charges for advance features, Available for download, Freely available | DOI:10.6084, DOI:10.17616/R3PK5R, r3d100010066, nlx_34569, DOI:10.25504/FAIRsharing.drtwnh | http://www.force11.org/node/4794, https://doi.org/10.17616/R3PK5R, https://doi.org/10.17616/r3HP4V, https://doi.org/10.6084/, https://dx.doi.org/10.6084/, https://fairsharing.org/10.25504/FAIRsharing.drtwnh, https://doi.org/10.17616/R3PK5R | SCR_004328 | Fig share, Figshare | 2026-08-13 09:27:09 | 1467 | |||||
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Cambridge Crystallographic Data Centre (CCDC) Resource Report Resource Website 500+ mentions |
Cambridge Crystallographic Data Centre (CCDC) (RRID:SCR_014707) | CCDC | service resource, data repository, storage service resource | Institution which compiles and distributes small molecule crystallography data from the Cambridge Structural Database (CSD), a repository of experimentally determined organic and metal-organic crystal structures. CCDC also produces associated knowledge-based application software for structural chemists. Structures deposited with CCDC are made publically available for download at the point of publication or at consent from the depositor. | crystallography, institutions, small molecule crystallography, crystal structure, organic crystal structure, metal-organic crystal structure, software |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases has parent organization: University of Cambridge; Cambridge; United Kingdom |
Publicly available | SCR_014707 | CCDC, Cambridge Crystallographic Data Center, Cambridge Crystallographic Data Centre (CCDC) | 2026-08-12 10:51:10 | 842 | ||||||||
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SPARC Portal Resource Report Resource Website 100+ mentions |
SPARC Portal (RRID:SCR_017041) | SPARC.science | service resource, data repository, storage service resource | SPARC data repository as of 2023 is an open data repository developed as part of the NIH SPARC initiative and has been used by SPARC funded investigator groups to curate and publish high quality datasets related to the autonomic nervous system. We are thrilled that as of August 2022, SPARC is accepting datasets from investigators that are not funded through the NIH SPARC program. The NIH's Common Fund Stimulating Peripheral Activity to Relieve Conditions (SPARC) program aims to transform our understanding of these nerve-organ interactions and ultimately advance neuromodulation field toward precise treatment of diseases and conditions for which conventional therapies fall short. | Nervous system, periphery, organ, human, FASEB list, repository, curated |
uses: Protocols.io uses: Brain Imaging Data Structure (BIDs) uses: Physiome Model Repository uses: SciGraph uses: o²S²PARC uses: SODA uses: Blackfynn Discover uses: ApiNATOMY uses: Biolucida uses: TissueMaker uses: ScaffoldMaker uses: ScaffoldFitter uses: OpenCOR uses: Pennsieve Data Management Platform uses: InterLex uses: Neurolucida 360 uses: SciCrunch uses: Tissue Mapper uses: Vesselucida 360 uses: DataCite uses: TissueMaker is used by: NIH Heal Project is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is recommended by: National Library of Medicine is related to: SPARC Anatomy Working Group is related to: HORNET CENTER FOR AUTONOMIC NERVE RECORDING AND STIMULATION SYSTEMS is related to: NIH PRECISION Human Pain Network is related to: SCKAN Explorer is related to: SCKANNER works with: SPARC Data Standard has organization facet: o²S²PARC has organization facet: SODA has organization facet: SPARC Anatomy Working Group has organization facet: Blackfynn Discover has organization facet: ApiNATOMY has organization facet: Pennsieve Data Management Platform |
NIH Office of the Director OD025349; NIH Office of the Director OD030213; NIH Office of the Director OD032619; NIH Office of the Director OD030541; NIH Office of the Director OD026585; NIH Office of the Director OD024908; NIH Office of the Director OD025306; NIH Office of the Director OD023849 |
PMID:34248680 DOI:10.1101/2021.02.10.430563 |
Free, Freely available, | DOI:10.26275, r3d100013719 | https://commonfund.nih.gov/sparc, https://docs.sparc.science/, https://data.sparc.science/, https://doi.org/10.26275, https://doi.dx/10.26275, https://sparc.science/data?type=dataset, https://doi.org/10.17616/R31NJN2V | SCR_017041 | , SPARC Project, SPARC Repository, Stimulating Peripheral Activity to Relieve Conditions | 2026-08-12 10:51:42 | 119 | ||||
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Dryad Digital Repository Resource Report Resource Website 1000+ mentions |
Dryad Digital Repository (RRID:SCR_005910) | data or information resource, database, service resource, data repository, storage service resource | International, curated, digital repository that makes the data underlying scientific publications discoverable, freely reusable, and citable. Particularly data for which no specialized repository exists. Provides the infrastructure for, and promotes the re-use of, data underlying the scholarly literature. Governed by a nonprofit membership organization. Membership is open to any stakeholder organization, including but not limited to journals, scientific societies, publishers, research institutions, libraries, and funding organizations. Most data are associated with peer-reviewed articles, although data associated with non-peer reviewed publications from reputable academic sources, such as dissertations, are also accepted. Used to validate published findings, explore new analysis methodologies, repurpose data for research questions unanticipated by the original authors, and perform synthetic studies.UC system is member organization of Dryad general subject data repository. | international, digital, repository, curated, data, collection, scientific, medical, publication, dataset, FASEB list |
is used by: NIH Heal Project is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: CINERGI is listed by: re3data.org is listed by: Connected Researchers is listed by: DataCite is listed by: FAIRsharing is related to: ImpactStory is related to: Connected Researchers has parent organization: NESCent - National Evolutionary Synthesis Center has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA has parent organization: University of California; California; USA |
Institute for Museum and Library Services ; JISC ; NSF ; European Commission |
DOI:10.25504/FAIRsharing.wkggtx, DOI:10.5061, r3d100000044, DOI:10.15146, DOI:10.17616/R34S33, nlx_149486 | https://doi.org/10.17616/R34S33, https://doi.org/10.5061/, https://doi.org/10.15146, https://dx.doi.org/10.5061/, https://dx.doi.org/10.15146, https://fairsharing.org/10.25504/FAIRsharing.wkggtx, https://api.datacite.org/dois?prefix=10.18736, https://api.datacite.org/dois?prefix=10.6076, , https://doi.org/10.17616/R34S33 | http://www.datadryad.org/ | SCR_005910 | , The Dryad Digital Repository, Dryad Digital Repository, Dryad | 2026-08-13 09:27:33 | 2790 | ||||||
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European Nucleotide Archive (ENA) Resource Report Resource Website 1000+ mentions |
European Nucleotide Archive (ENA) (RRID:SCR_006515) | ENA | data or information resource, database, service resource, data repository, storage service resource | Public archive providing a comprehensive record of the world''''s nucleotide sequencing information, covering raw sequencing data, sequence assembly information and functional annotation. All submitted data, once public, will be exchanged with the NCBI and DDBJ as part of the INSDC data exchange agreement. The European Nucleotide Archive (ENA) captures and presents information relating to experimental workflows that are based around nucleotide sequencing. A typical workflow includes the isolation and preparation of material for sequencing, a run of a sequencing machine in which sequencing data are produced and a subsequent bioinformatic analysis pipeline. ENA records this information in a data model that covers input information (sample, experimental setup, machine configuration), output machine data (sequence traces, reads and quality scores) and interpreted information (assembly, mapping, functional annotation). Data arrive at ENA from a variety of sources including submissions of raw data, assembled sequences and annotation from small-scale sequencing efforts, data provision from the major European sequencing centers and routine and comprehensive exchange with their partners in the International Nucleotide Sequence Database Collaboration (INSDC). Provision of nucleotide sequence data to ENA or its INSDC partners has become a central and mandatory step in the dissemination of research findings to the scientific community. ENA works with publishers of scientific literature and funding bodies to ensure compliance with these principles and to provide optimal submission systems and data access tools that work seamlessly with the published literature. ENA is made up of a number of distinct databases that includes the EMBL Nucleotide Sequence Database (Embl-Bank), the newly established Sequence Read Archive (SRA) and the Trace Archive. The main tool for downloading ENA data is the ENA Browser, which is available through REST URLs for easy programmatic use. All ENA data are available through the ENA Browser. Note: EMBL Nucleotide Sequence Database (EMBL-Bank) is entirely included within this resource. | analysis, bioinformatics, dna, nucleotide, sequencing, web service, rna, molecular biology, nucleotide sequence, protein, gene expression, gene, genome, biochemistry, molecular structure, metabolite, protein binding, chemogenomics, gold standard |
is used by: BioSample Database at EBI is recommended by: NIDDK Information Network (dkNET) is recommended by: National Library of Medicine is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: 3DVC is listed by: re3data.org is listed by: OMICtools is related to: NCBI Sequence Read Archive (SRA) is related to: ENA Sequence Version Archive is related to: VBASE2 is related to: DDBJ Sequence Read Archive is related to: ISA Infrastructure for Managing Experimental Metadata is related to: DNA DataBank of Japan (DDBJ) is related to: DNA DataBank of Japan (DDBJ) is related to: NCBI is related to: INSDC is related to: INSDC is related to: NCBI Assembly Archive Viewer has parent organization: European Bioinformatics Institute is parent organization of: ENA Sequence Search works with: Eutherian comparative genomic analysis protocol |
EMBL ; Wellcome Trust ; European Union |
PMID:20972220 | Public, The community can contribute to this resource, Acknowledgement requested | OMICS_01029, r3d100010527, nif-0000-32981 | http://www.ebi.ac.uk/embl/, https://doi.org/10.17616/R3HW3J | SCR_006515 | ENA, European Nucleotide Archive | 2026-08-13 09:27:32 | 1344 | ||||
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FlyBase Resource Report Resource Website 1000+ mentions |
FlyBase (RRID:SCR_006549) | FB | organism-related portal, data or information resource, topical portal, database, service resource, data repository, storage service resource, portal | Database of Drosophila genetic and genomic information with information about stock collections and fly genetic tools. Gene Ontology (GO) terms are used to describe three attributes of wild-type gene products: their molecular function, the biological processes in which they play a role, and their subcellular location. Additionally, FlyBase accepts data submissions. FlyBase can be searched for genes, alleles, aberrations and other genetic objects, phenotypes, sequences, stocks, images and movies, controlled terms, and Drosophila researchers using the tools available from the "Tools" drop-down menu in the Navigation bar. | RIN, Resource Information Network, mutant, gene, genome, blast, genotype, phenotype, allele, sequence, stock, image, movie, controlled term, video resource, image collection, life-cycle, genome, expression, rna-seq, genetics, drosophilidae, bio.tools, FASEB list, RRID Community Authority |
is used by: NIF Data Federation is used by: Resource Identification Portal is used by: PhenoGO is used by: Integrated Animals is used by: Drososhare is recommended by: NIDDK Information Network (dkNET) is recommended by: National Library of Medicine is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: re3data.org is listed by: OMICtools is listed by: bio.tools is listed by: Debian is listed by: Resource Information Network is related to: FlyMine is related to: Virtual Fly Brain is related to: AmiGO is related to: Drosophila melanogaster Exon Database is related to: HomoloGene is related to: UniParc at the EBI is related to: UniParc is related to: Gene Ontology is related to: NIH Data Sharing Repositories is related to: GBrowse is related to: Integrated Manually Extracted Annotation is related to: PhenoGO has parent organization: Harvard University; Cambridge; United States has parent organization: University of Cambridge; Cambridge; United Kingdom has parent organization: Indiana University; Indiana; USA has parent organization: University of New Mexico; New Mexico; USA is parent organization of: Drosophila anatomy and development ontologies is parent organization of: Fly Taxonomy is parent organization of: FlyBase Controlled Vocabulary is parent organization of: Drosophila Development Ontology is organization facet of: Alliance of Genome Resources |
MRC ; Indiana Genomics Initiative ; NSF ; NIH Blueprint for Neuroscience Research ; NIHGRI P41 HG000739 |
PMID:24234449 PMID:22127867 PMID:18948289 PMID:18641940 PMID:18160408 PMID:17099233 PMID:16381917 PMID:15608223 PMID:12519974 PMID:11752267 PMID:11465064 PMID:9847148 PMID:9399806 PMID:9045212 PMID:8594600 PMID:8578603 PMID:7937045 PMID:7925011 |
nif-0000-00558, r3d100010591, OMICS_01649, biotools:flybase | https://bio.tools/flybase, https://doi.org/10.17616/R3903Q | http://flybase.net | SCR_006549 | flybase A Drosophila Genomic and Genetic Database, FlyBase: A Database of Drosophila Genes and Genomes, FLYBASE, FlyBase: A Database of Drosophila Genes & Genomes, FB | 2026-08-13 09:27:31 | 4234 | ||||
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O'Brien Urology Centers Resource Report Resource Website |
O'Brien Urology Centers (RRID:SCR_015473) | topical portal, data or information resource, organization portal, disease-related portal, resource, portal | Program that aims to enhance the effectiveness of research related to noncancerous urologic dysfunction by encouraging collaboration amongst investigators. | urologic dysfunction, collaboration, urology research portal, urology portal |
is listed by: NIDDK Information Network (dkNET) is affiliated with: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases has organization facet: Mayo Clinic O'Brien Urology Center has organization facet: O'Brien Center for Benign Urologic Research at University of Wisconsin-Madision and University of Massachusetts-Boston has organization facet: Columbia University George M. O'Brien Urology Center |
urologic dysfunction | NIDDK RFA-DK16-013 | Available to the research community | SCR_015473 | 2026-08-13 09:29:22 | 0 | ||||||||
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Digestive Disease Centers Resource Report Resource Website 1+ mentions |
Digestive Disease Centers (RRID:SCR_015212) | topical portal, data or information resource, organization portal, disease-related portal, resource, portal | Center of collaborating research centers working on the research of digestive and liver-related diseases. Each center focuses on etiology, treatment, and prevention of digestive and/or liver diseases. | digestive diseases, liver diseases |
is listed by: NIDDK Information Network (dkNET) is listed by: Diabetes Research Centers is affiliated with: Center for the Study of Inflammatory Bowel Disease is affiliated with: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases has organization facet: Marion Bessin Liver Research Center has organization facet: Texas Medical Center Digestive Diseases Center has organization facet: Cincinnati Digestive Health Center has organization facet: Center for the Study of Inflammatory Bowel Disease has organization facet: Mayo Clinic Center for Cell Signaling in Gastroenterology has organization facet: CURE - Digestive Diseases Research Center has organization facet: Cleveland Digestive Diseases Research Core Center has organization facet: USC Liver Transplant Program and Center for Liver Disease has organization facet: Vanderbilt Digestive Disease Research Center has organization facet: Washington University Digestive Diseases Research Core Center has organization facet: Yale Liver Center has organization facet: Emory Epithelial Pathobiology Research Development Center has organization facet: Mucosal HIV and Immunobiology Center has organization facet: Harvard Digestive Disease Center has organization facet: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center has organization facet: UCSF Liver Center has organization facet: University of Chicago Digestive Diseases Research Core Center has organization facet: University of Michigan Center for Gastrointestinal Research has organization facet: University of North Carolina Center for Gastrointestinal Biology and Disease has organization facet: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases |
digestive disease | NIDDK P30RFA-DK17-001 | Available to the research community | https://www.niddk.nih.gov/research-funding/research-programs/digestive-disease-centers | SCR_015212 | 2026-08-13 09:29:09 | 1 | |||||||
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Cystic Fibrosis Research and Translation Centers Resource Report Resource Website |
Cystic Fibrosis Research and Translation Centers (RRID:SCR_015383) | topical portal, data or information resource, organization portal, disease-related portal, resource, portal | Research centers that provide support for basic, preclinical, and clinical research efforts to advance scientific knowledge and new therapies for cystic fibrosis. | cystic fibrosis, research, collaboration |
is listed by: NIDDK Information Network (dkNET) is affiliated with: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases has organization facet: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center has organization facet: Gregory Fleming James Cystic Fibrosis Research Center has organization facet: Cystic Fibrosis Center - University of California San Francisco has organization facet: Cystic Fibrosis Center University of Pittsburgh has organization facet: Cystic Fibrosis Center - University of Washington has organization facet: University of Pennsylvania Center for Molecular Therapy for Cystic Fibrosis has organization facet: University of Iowa Center for Gene Therapy |
Cystic Fibrosis | NIDDK RFA-DK17-007 | Available to the research community | SCR_015383 | 2026-08-13 09:29:19 | 0 | ||||||||
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IntAct Resource Report Resource Website 1000+ mentions |
IntAct (RRID:SCR_006944) | IntAct | data or information resource, database, service resource, data repository, storage service resource | Open source database system and analysis tools for molecular interaction data. All interactions are derived from literature curation or direct user submissions. Direct user submissions of molecular interaction data are encouraged, which may be deposited prior to publication in a peer-reviewed journal. The IntAct Database contains (Jun. 2014): * 447368 Interactions * 33021 experiments * 12698 publications * 82745 Interactors IntAct provides a two-tiered view of the interaction data. The search interface allows the user to iteratively develop complex queries, exploiting the detailed annotation with hierarchical controlled vocabularies. Results are provided at any stage in a simplified, tabular view. Specialized views then allows "zooming in" on the full annotation of interactions, interactors and their properties. IntAct source code and data are freely available. | protein domain, motif, protein interaction, molecular interaction, interaction, protein, binary interaction, complex, data set, protein-protein interaction, pathway, small molecule-protein, nucleic acid-protein, small molecule, nucleic acid, protein binding, chromatin, cancer, apoptosis, molecular biology, virus, source code, isoform, gold standard |
is used by: ChannelPedia is used by: MINT is used by: Pathway Analysis Tool for Integration and Knowledge Acquisition is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: 3DVC is listed by: re3data.org is listed by: OMICtools is related to: 3D-Interologs is related to: IMEx - The International Molecular Exchange Consortium is related to: MPIDB is related to: TissueNet - The Database of Human Tissue Protein-Protein Interactions is related to: InteroPorc is related to: Interaction Reference Index is related to: Pathway Commons is related to: ConsensusPathDB is related to: FlyMine is related to: IMEx - The International Molecular Exchange Consortium is related to: Integrated Molecular Interaction Database is related to: VirHostNet: Virus-Host Network is related to: PSICQUIC Registry is related to: UniProt is related to: SIB Swiss Institute of Bioinformatics is related to: I2D is related to: InnateDB is related to: MatrixDB is related to: MBInfo is related to: AgBase is related to: Cardiovascular Gene Ontology Annotation Initiative is related to: PSI-MI is related to: Agile Protein Interactomes DataServer has parent organization: European Bioinformatics Institute works with: IMEx - The International Molecular Exchange Consortium |
European Union contract FP7-HEALTH-2007-223411; European Union contract FP7-HEALTH-2007-200767 |
PMID:24234451 PMID:22121220 PMID:19850723 PMID:17145710 PMID:14681455 |
Apache License, v2, (software), Creative Commons Attribution License, (data), The community can contribute to this resource | OMICS_01918, r3d100010671, nif-0000-03026 | https://doi.org/10.17616/R3QS4R | SCR_006944 | IntAct | 2026-08-13 09:27:40 | 1955 | ||||
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The Immunology Database and Analysis Portal (ImmPort) Resource Report Resource Website 1000+ mentions |
The Immunology Database and Analysis Portal (ImmPort) (RRID:SCR_012804) | ImmPort | ontology, data or information resource, topical portal, controlled vocabulary, disease-related portal, database, service resource, data repository, storage service resource, portal | Data sharing repository of clinical trials, associated mechanistic studies, and other basic and applied immunology research programs. Platform to store, analyze, and exchange datasets for immune mediated diseases. Data supplied by NIAID/DAIT funded investigators and genomic, proteomic, and other data relevant to research of these programs extracted from public databases. Provides data analysis tools and immunology focused ontology to advance research in basic and clinical immunology. | immunology, basic, clinical, data, share, store, analyze, exchange, dataset, immune, mediated, disease, analysis, tool, FASEB list |
is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: NIDDK Research Resources is affiliated with: Cytokine Registry is related to: MetaCyto is related to: The 10000 Immunomes is related to: NIAID |
Immune mediated disease | NIH ; NIAID ; DAIT ; NIAID HHSN266200400076C; NIAID HHSN272201200028C |
PMID:24791905 | nlx_152691, r3d100012529 | http://www.immport.org/immport-open/public/home/home, http://www.immport.org/ | http://www.immport.org | SCR_012804 | Immunology Data and Analysis Portal, ImmPort system, ImmPort, Immunology Database and Analysis Portal | 2026-08-13 09:29:02 | 1383 | |||
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FLOWRepository Resource Report Resource Website 100+ mentions |
FLOWRepository (RRID:SCR_013779) | data or information resource, database, service resource, data repository, storage service resource | A database of flow cytometry experiments where users can query and download data collected and annotated according to the MIFlowCyt data standard. | cytometry, database, flow cytometry experiment, miflowcyt, FASEB list |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is related to: Cytobank is related to: Cytobank |
Wallace H. Coulter Foundation ; International Society for Advancement of Cytometry |
PMID:22887982 | Public, Available to the research community | r3d100011280 | SCR_013779 | FlowRepository, FLOW Repository | 2026-08-13 09:28:55 | 313 | ||||||
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Mass spectrometry Interactive Virtual Environment (MassIVE) Resource Report Resource Website 1000+ mentions |
Mass spectrometry Interactive Virtual Environment (MassIVE) (RRID:SCR_013665) | MassIVE | data or information resource, database, service resource, data repository, storage service resource | Mass spectrometry Interactive Virtual Environment (MassIVE) is a community resource developed by the NIH-funded Center for Computational Mass Spectrometry to promote the global, free exchange of mass spectrometry data. Data repository for proteomics data. | Proteomics, Mass Spec, FASEB list |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is related to: ProteomeXchange has parent organization: University of California at San Diego; California; USA |
r3d100012858 | https://massive.ucsd.edu/ | SCR_013665 | Mass spectrometry Interactive Virtual Environment (MassIVE), MassIVE, Mass spectrometry Interactive Virtual Environment | 2026-08-13 09:28:53 | 1409 | |||||||
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Metabolomics Workbench Resource Report Resource Website 500+ mentions |
Metabolomics Workbench (RRID:SCR_013794) | MetWB | data or information resource, service resource, data repository, storage service resource | Repository for metabolomics data and metadata which provides analysis tools and access to various resources. NIH grantees may upload data and general users can search metabolomics database. Provides protocols for sample preparation and analysis, information about NIH Metabolomics Program, data sharing guidelines, funding opportunities, services offered by its Regional Comprehensive Metabolomics Resource Cores (RCMRC)s, and training workshops. | repository, metabolomics, database, funding, training, protocol, bio.tools, FASEB list, DRKB |
is used by: NIH Heal Project is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases lists: NIH Metabolomics program lists: MetaCore lists: JMP lists: STATISTICA lists: Spotfire lists: Coordination of Standards in Metabolomics lists: MetaboLights lists: MetabolomeXchange lists: Metabolomics Society lists: Birmingham Metabolite Library lists: Glycan Mass Spectral Database (GMDB) lists: Mass Spectral Library lists: mzCloud lists: MetabolomeExpress lists: Spectral Database System (SDBS) lists: CTSgetR lists: Hierarchical Clustering lists: imDEV lists: Linear Discriminant Analysis lists: Principal Components Analysis lists: mwtabR lists: 3Omics lists: ACD/ NMR Processor lists: NIST Mass Spectrometry Data Center lists: Chemical Translation Service lists: Chenomx NMR Suite lists: DeviumWeb lists: MBRole lists: MetaMapR lists: MetaP lists: Metscape lists: SIMCA lists: TeachingDemos is listed by: NIH Data Sharing Repositories is listed by: bio.tools is listed by: Debian is listed by: re3data.org is listed by: DataCite has parent organization: University of California; California; USA is parent organization of: Metabolomics Workbench Metabolite Database |
NIH ; NIDDK DK141185 |
Free, Freely available | biotools:Metabolomics_Workbench, r3d100012314 | https://bio.tools/Metabolomics_Workbench, https://api.datacite.org/dois?prefix=10.21228 | SCR_013794 | Metabolomics Workbench, MetWB, UCSD Metabolomics Workbench, Metabolomics Workbench (MetWB) | 2026-08-13 09:28:55 | 666 | |||||
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Diabetes Research Centers Resource Report Resource Website 1+ mentions |
Diabetes Research Centers (RRID:SCR_014535) | topical portal, data or information resource, organization portal, disease-related portal, resource, portal | Diabetes Research Centers (DRC) is an integrated program of diabetes, endocrinology and metabolism research. | diabetes research, endocrinology research, metabolism research |
lists: Preventing Early Renal Loss in Diabetes (PERL) lists: Clinical Trials in Organ Transplantation (CTOT) lists: Stanford Diabetes Research Center lists: Clinical Islet Transplantation Consortium (CITC) lists: Restoring Insulin Secretion Consortium (RISE) lists: Digestive Disease Centers lists: Drug-Induced Liver Injury Network lists: Nutrition and Obesity Research Centers lists: Chronic Renal Insufficiency Cohort Study lists: Glycemic Reduction Approaches in Diabetes: A Comparative Effectiveness Study (GRADE) lists: Diabetes Prevention Type 1 lists: Monogenic Diabetes Registry lists: Chronic Prostatitis Collaborative Research Network Clinical Trial- Alfuzosin lists: National Glycohemoglobin Standardization Program is listed by: NIDDK Information Network (dkNET) is affiliated with: University of California at San Diego; California; USA is affiliated with: University of California at Los Angeles; California; USA is affiliated with: University of California at San Francisco; California; USA is affiliated with: Columbia University; New York; USA is affiliated with: Albert Einstein College of Medicine; New York; USA is affiliated with: Indiana University; Indiana; USA is affiliated with: Johns Hopkins University; Maryland; USA is affiliated with: University of Maryland; Maryland; USA is affiliated with: Joslin Diabetes Center is affiliated with: University of Alabama at Birmingham; Alabama; USA is affiliated with: University of Michigan; Ann Arbor; USA is affiliated with: University of Pennsylvania; Philadelphia; USA is affiliated with: University of Washington; Seattle; USA is affiliated with: Vanderbilt University; Tennessee; USA is affiliated with: Washington University in St. Louis; Missouri; USA is affiliated with: Yale University; Connecticut; USA is affiliated with: Yale Diabetes Research Center is affiliated with: University of Washington Diabetes Research Center is affiliated with: Penn Diabetes Research Center is affiliated with: University of Chicago Diabetes Research and Training Center is affiliated with: University of Alabama at Birmingham Diabetes Research Center is affiliated with: University of California San Francisco Diabetes Research Center is affiliated with: University of California San Diego - University of California Los Angeles Diabetes Research Center is affiliated with: Indiana Diabetes Research Center is affiliated with: Columbia Diabetes Research Center is affiliated with: Einstein-Mount Sinai Diabetes Research Center is affiliated with: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases has organization facet: Joslin Diabetes Center has organization facet: Yale Diabetes Research Center has organization facet: University of Washington Diabetes Research Center has organization facet: Penn Diabetes Research Center has organization facet: University of Chicago Diabetes Research and Training Center has organization facet: Michigan Diabetes Research Center has organization facet: University of Alabama at Birmingham Diabetes Research Center has organization facet: University of California San Francisco Diabetes Research Center has organization facet: University of California San Diego - University of California Los Angeles Diabetes Research Center has organization facet: Indiana Diabetes Research Center has organization facet: Columbia Diabetes Research Center has organization facet: Einstein-Mount Sinai Diabetes Research Center has organization facet: Stanford Diabetes Research Center has organization facet: Boston Area Diabetes Endocrinology Research Center has organization facet: Johns Hopkins University - University of Maryland Diabetes Research Center has organization facet: Vanderbilt Diabetes Research and Training Center has organization facet: Washington University School of Medicine Diabetes Research Center has organization facet: Center for American Indian and Alaska Native Diabetes Translational Research |
Type 1 diabetes, Type 2 diabetes, Diabetes | Available to the research community | SCR_014535 | 2026-08-13 09:29:03 | 1 | |||||||||
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Cancer Imaging Archive (TCIA) Resource Report Resource Website 100+ mentions |
Cancer Imaging Archive (TCIA) (RRID:SCR_008927) | TCIA | data or information resource, database, service resource, data repository, storage service resource, data set, catalog, image repository | Archive of medical images of cancer accessible for public download. All images are stored in DICOM file format and organized as Collections, typically patients related by common disease (e.g. lung cancer), image modality (MRI, CT, etc) or research focus. Neuroimaging data sets include clinical outcomes, pathology, and genomics in addition to DICOM images. Submitting Data Proposals are welcomed. | dicom, imaging, ct, pet, pt, x-ray, mri, magnetic resonance, medical, clinical, research, clinical neuroinformatics, computed tomography, dicom, imaging genomics, magnetic resonance, pet, spect, test data, web service, image collection, image, FASEB list |
is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: DataCite is listed by: re3data.org is listed by: FAIRsharing is affiliated with: BraTumIA (Brain Tumor Image Analysis) is related to: NIH Data Sharing Repositories is related to: NCI Imaging Data Commons has parent organization: Frederick National Laboratory for Cancer Research has parent organization: NCI-Frederick |
Cancer | NCI | Restricted | DOI:10.25504/FAIRsharing.jrfd8y, DOI:10.17616/R3NH0V, DOI:10.7937, nlx_151749, r3d100011559 | http://www.nitrc.org/projects/tcia, http://www.cancerimagingarchive.net/, http://www.cancerimagingarchive.net/primary-data/, https://wiki.cancerimagingarchive.net/display/Public/Collections, https://doi.org/10.17616/R3NH0V, https://doi.org/10.17616/r3NH0V, https://doi.org/10.7937/, https://dx.doi.org/10.7937/, https://fairsharing.org/10.25504/FAIRsharing.jrfd8y, https://doi.org/10.17616/R3NH0V, https://doi.org/10.17616/R3NH0V | SCR_008927 | TCIA, Cancer Imaging Archive, The Cancer Imaging Archive (TCIA), Cancer Imaging Archive (TCIA), The Cancer Imaging Archive | 2026-08-13 09:28:01 | 415 | ||||
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PubChem BioAssay Resource Report Resource Website 100+ mentions |
PubChem BioAssay (RRID:SCR_010734) | PubChem BioAssay | data or information resource, database, service resource, data repository, storage service resource | Data and information collection and repository for biological activities of small molecules and small interfering RNAs (siRNAs) hosted by the US National Institutes of Health (NIH). Used to select and summarize the bioactivities of tested substances. | collection, compound, substance, bioassay, chemical, structure, biological, activity |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is affiliated with: Entrez is related to: PubChem has parent organization: NCBI |
Intramural Research program of the National Institutes of Health | PMID:19933261 PMID:22140110 |
nlx_93939 | http://pubchem.ncbi.nlm.nih.gov/, https://www.ncbi.nlm.nih.gov/pcassay | SCR_010734 | NCBI PubChem BioAssay, PubChem BioAssay Database | 2026-08-13 09:28:21 | 498 |
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