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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
https://www.beckman.it/flow-cytometry/research-flow-cytometers/cytoflex/software
Software program that controls instrument operation, data collection and analysis. Software for CytoFLEX Platform by Beckman Coulter.
Proper citation: CytExpert Software (RRID:SCR_017217) Copy
https://www.alliedvision.com/en/products/cameras/detail/Mako%20G/G-125/action/pdf.html
GigE camera with Sony ICX445 CCD sensor, 30.3 fps by Allied Vision. 1.2 megapixel GigE machine vision camera that incorporates high quality Type 1/3 (6.0 diagonal) Sony ICX445 CCD sensor with EXview HAD technology. At full resolution, this camera runs frames per second. With smaller region of interest, higher frame rates are possible.
Proper citation: Allied Vision: Mako G-125 camera (RRID:SCR_018454) Copy
BD LSRFortessa system can be configured with up to 7 lasers, blue, red, violet, UV and yellow-green. The instrument can accommodate the detection of up to 18 colors simultaneously with defined set of optical filters that meet or exceed the majority of today's assay requirements. BD FACSDiva software controls the efficient setup, acquisition, and analysis of flow cytometry data from the BD LSRFortessa workstation. The software is common across BD FACS instrument families, including the BD FACSCanto cell analyzer and BD FACSAria cell sorter systems.
Proper citation: BD Biosciences: LSRFortessa Cell Analyzer (RRID:SCR_018655) Copy
Company provides laboratories worldwide with analytical instruments and supplies, clinical and diagnostic testing services, consumables, applications and expertise in life sciences and applied chemical markets.
Proper citation: Agilent Technologies (RRID:SCR_013575) Copy
https://www.labx.com/product/sciex-api-5000
Triple quadrupole liquid chromatography mass spectrometer for analysis of bioanalytical samples. It can be used for DMPK and ADME studies.API 5000 LC/MS/MS System delivers the lowest limits of detection for the most demanding DMPK and ADME studies.
Proper citation: SCIEX:: API 5000 Triple Quadrupole Liquid Chromatography Mass Spectrometer System (RRID:SCR_018437) Copy
https://edspace.american.edu/openbehavior/project/dual-port-lick-detector/
Project related to measuring licking behavior in mice.System includes device used for both real time measurement and manipulation of licking behavior in head fixed mice. System provides distribution package for Dual Port Lick Detector.Package includes files relevant to building lick detector.
Proper citation: Dual port Lick Detector project (RRID:SCR_021454) Copy
https://edspace.american.edu/openbehavior/project/cerebro/
Project related to wireless controlled optogenetic stimulation. Provides system for wireless optogenetic stimulation developed in Karpova Lab with ability to be customized.Features Cerebro,rechargeable, battery powered wireless receiver;head implant containing optical fibers and two independent laser diodes; base station for transmitting radio signals to Cerebro, controlled by Windows computer via USB or by TTL; charging dock; and Xavier, user friendly GUI for sending and logging base station commands.
Proper citation: Cerebro Wireless Optogenetic System project (RRID:SCR_021474) Copy
https://edspace.american.edu/openbehavior/project/4-port-nose-poke/
Portal provides open source nose poke system utilizing Arduino microcontroller, several low cost electronic components, and PVC behavioral arena. System developed by University of Basel scientists for use in behavior experiments.
Proper citation: 4 Port Nose Poke (RRID:SCR_021592) Copy
https://edspace.american.edu/openbehavior/project/open-source-platform-sensory-tasks/
Project related to report animal decision in response to stimulus.Includes software tool as Arduino and Python based platform for Go or No Go sensory task to report animal decision in response to stimulus provided by University of Melbourne, Melbourne, VIC, Australia scientists.
Proper citation: Open Source platform for Sensory Tasks project (RRID:SCR_021468) Copy
https://edspace.american.edu/openbehavior/project/mri-compatible-microdrive/
MRI compatible microdrive that can precisely position electrodes without causing significant imaging artifacts.
Proper citation: MRI Compatible Microdrive (RRID:SCR_022352) Copy
https://edspace.american.edu/openbehavior/project/neonatal-stereotax/
3D printed device for stereotaxic viral delivery into brains of neonatal mice.Used for stable and precise stereotaxic surgery in neonatal mice.
Proper citation: Neonatal Stereotaxic Mouse Adaptor (RRID:SCR_022349) Copy
https://edspace.american.edu/openbehavior/project/led-matrix-stimuli/
Open source device consists of three LED matrices that can be independently controlled via open source Arduino Uno microcontroller. Matrices of LEDs are mounted above nose pokes to examine perceptual decision making in rats. Highly modifiable LED matrices for visual stimulus presentation in behavioral studies.Designs for printing these accessory devices are available in GitHub account for the project.
Proper citation: LED Matrix Stimuli (RRID:SCR_022345) Copy
https://edspace.american.edu/openbehavior/project/clara/
Closed loop automated reaching apparatus for interrogating complex motor behaviors.Mechanical components include behavior box, series of cameras, and food pellet dispenser. Single workstation computer manages cameras, communicates with microcontroller, and analyzes mouse behavior in real time using modules extracted from DeepLabCut. Integrates fully automated, markerless kinematic tracking of multiple features to classify animal behavior and delivers neural stimulation based on behavioral outcomes. CLARA is compatible with advanced neurophysiological tools, enabling testing of neurostimulation devices and identification of novel neurological biomarkers.System fully automates trial initiation and pellet delivery and is capable of accurately delivering stimulation in response to trial outcome with short latency.
Proper citation: Closed Loop Automated Reaching Apparatus (RRID:SCR_022365) Copy
https://edspace.american.edu/openbehavior/project/compass/
Non invasive, infrared activity and sleep measurement system that uses passive infrared sensors and Arduino microprocessor. Publication provides protocol for assembling COMPASS as well as provides support protocols and python scripts for data analysis, best practices for optimum results, troubleshooting, and alternative protocols for different use scenarios.
Proper citation: COMPASS (RRID:SCR_022329) Copy
https://edspace.american.edu/openbehavior/project/tetrodrive/
3D printed microdrive for electrophysiology and optophysiology. Consists of main body and head. Used for in vivo tetrode recording, optical imaging, and optogenetic manipulation in freely moving mice.Design files and build instructions for this device can be found on TetrODrive GitHub.Microdrive can be assembled in 15 min and price for all materials, including 3D printer, is lower than single commercial microdrive.
Proper citation: TetrODrive (RRID:SCR_022326) Copy
https://edspace.american.edu/openbehavior/project/frost/
Open source system built around Arduino based microcontroller for analog and digital input and synchronization combined with custom printed circuit board. Hardware and Arduino-based firmware used to synchronize experimental and electrophysiological data.
Proper citation: Florida research open source synchronization tool (RRID:SCR_022344) Copy
https://edspace.american.edu/openbehavior/project/pyos-5/
Open source operant box system optimized for use with tethered animals. System includes hardware and software. Control electronics are build on pyControl, controlling custom PCB integrating 5 infra-red break-beam sensors and 5 stimulus LEDs, single nose-poke for reward receptacle, stepper motor for control of custom peristaltic pump for reward delivery, audio board for tone generation through attached speaker, house light and fan, LED driver for optogenetic stimulation, and bidirectional communication with external devices via TTL pulses.
Proper citation: pyOS-5 project (RRID:SCR_022335) Copy
https://edspace.american.edu/openbehavior/?s=pyPhotometry
Open source Python based hardware and software for fiber photometry data acquisition. System includes compact, low cost, data acquisition board built around Micropython microcontroller, and cross platform graphical user interface for controlling acquisition and visualising signals. Can acquire two analog and two digital signals, and control two external LEDs via built in LED drivers. Time division multiplexed illumination allows independent readout of fluorescence evoked by different excitation wavelengths from single photoreceiver signal.
Proper citation: pyPhotometry (RRID:SCR_022940) Copy
https://github.com/BadenLab/LED-Zappelin
Open source LED controller for arbitrary spectrum visual stimulation and optogenetics during 2 photon imaging. Device that rapidly time interleaves stimulation and detection epochs during two photon imaging.
Proper citation: LED Zappelin’ (RRID:SCR_022560) Copy
Flow cytometer as novel cell analyzer that leverages inherent benefits of flow cytometry and enables simultaneous measurement of up to 50 different characteristics of single cell.
Proper citation: BD Biosciences: FACSymphony A5 Cell Analyzer (RRID:SCR_022538) Copy
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