Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Automated Home-Cage Functional Imaging project Resource Report Resource Website |
Automated Home-Cage Functional Imaging project (RRID:SCR_021567) | project portal, data or information resource, portal, instrument resource | Portal provides automated system for mesoscopic functional imaging that allows subjects to self initiate head fixation and imaging within home cage. Developed by University of British Columbia scientists. System for automated head fixation within mouse home cages. | Instrument, mesoscopic functional imaging, self initiate head fixation, imaging within home cage, OpenBehavior |
is listed by: OpenBehavior is related to: Automated Home-Cage Functional Imaging has parent organization: University of British Columbia; British Columbia; Canada |
DOI:10.1038/ncomms11611 | Free, Freely available | SCR_021567 | Automated Home-Cage Functional Imaging system | 2026-07-31 09:28:54 | 0 | ||||||||
|
Profinder Resource Report Resource Website 10+ mentions |
Profinder (RRID:SCR_017026) | data processing software, data analysis software, software application, software resource | Software tool as fast, batch processing feature extraction software for differential analysis that supports data from Agilent GC/MSD, GC/Q-TOF, LC/TOF and LC/Q-TOF instruments. Speeds up differential and flux analysis workflows using intuitive user interface. Used to analyze raw mass spectrometry data, choose peaks. | fast, batch, processing, feature, extraction, software, differential, analysis, Agilent, instrument, support, raw, mass, spectrometry, data | Commercially available | SCR_017026 | Profinder 8 | 2026-07-31 09:28:04 | 17 | ||||||||||
|
CytExpert Software Resource Report Resource Website 500+ mentions |
CytExpert Software (RRID:SCR_017217) | data analysis software, data acquisition software, software application, software resource, data processing software | Software program that controls instrument operation, data collection and analysis. Software for CytoFLEX Platform by Beckman Coulter. | control, instrument, data, collection, analysis, CytoFLEX Platform, Beckman Coulter, flow, cytometry |
is listed by: OMICtools works with: Beckman Coulter: CytoFLEX LX Flow Cytometer |
OMICS_30185 | https://www.beckman.fr/flow-cytometry/instruments/cytoflex/software | SCR_017217 | 2026-07-31 09:28:06 | 888 | |||||||||
|
Thermo Fisher: Applied Biosystems: 3500xl Genetic Analyzer Resource Report Resource Website 1+ mentions |
Thermo Fisher: Applied Biosystems: 3500xl Genetic Analyzer (RRID:SCR_018438) | instrument resource | Applied Biosystems 3500xL 24-capillary Genetic Analyzer is used for the Human Identification application.Genetic analyzer that utilizes capillary electrophoresis for genetic analysis. It has capillary lengths of 50 cm or 36 cm and can use 384 well plates or 96 well plates. | Genetic Analyzer, Instrument, Equipment, Applied Biosystems, USEDit, ABRF, Capillary Electrophoresis | is listed by: USEDit | SCR_018447, Model_Number_3500xl, SCR_019574 | https://assets.thermofisher.com/TFS-Assets/LSG/manuals/4401661.pdf | SCR_018438 | 2026-07-31 09:28:16 | 1 | |||||||||
|
Dual port Lick Detector project Resource Report Resource Website |
Dual port Lick Detector project (RRID:SCR_021454) | project portal, data or information resource, portal, instrument resource | Project related to measuring licking behavior in mice.System includes device used for both real time measurement and manipulation of licking behavior in head fixed mice. System provides distribution package for Dual Port Lick Detector.Package includes files relevant to building lick detector. | Building lick detector files, lick detector, OpenBehavior, Instrument |
is listed by: OpenBehavior is related to: Dual Port Lick Detector |
DOI:10.1152/jn.00500.2018 | Free, Freely available | SCR_021454 | Dual port Lick Detector | 2026-07-31 09:28:36 | 0 | ||||||||
|
Cerebro Wireless Optogenetic System project Resource Report Resource Website |
Cerebro Wireless Optogenetic System project (RRID:SCR_021474) | project portal, data or information resource, portal, instrument resource | Project related to wireless controlled optogenetic stimulation. Provides system for wireless optogenetic stimulation developed in Karpova Lab with ability to be customized.Features Cerebro,rechargeable, battery powered wireless receiver;head implant containing optical fibers and two independent laser diodes; base station for transmitting radio signals to Cerebro, controlled by Windows computer via USB or by TTL; charging dock; and Xavier, user friendly GUI for sending and logging base station commands. | Wireless optogenetic stimulation, Janelia open source hardware, Janelia open source software, Cerebro battery powered wireless receiver, head implant, Xavier, OpenBehavior, Instrument | is listed by: OpenBehavior | Free, Freely available | SCR_021474 | Cerebro Wireless Optogenetic System | 2026-07-31 09:28:38 | 0 | |||||||||
|
4 Port Nose Poke Resource Report Resource Website |
4 Port Nose Poke (RRID:SCR_021592) | project portal, data or information resource, portal, instrument resource | Portal provides open source nose poke system utilizing Arduino microcontroller, several low cost electronic components, and PVC behavioral arena. System developed by University of Basel scientists for use in behavior experiments. | Instrument, motor behavior, behavioral arena, nose poke system, Arduino microcontroller, OpenBehavior |
is listed by: OpenBehavior has parent organization: University of Basel; Basel; Switzerland |
DOI:10.1016/j.mex.2016.04.002 | Free, Freely available | SCR_021592 | 2026-07-31 09:28:55 | 0 | |||||||||
|
Open Source platform for Sensory Tasks project Resource Report Resource Website |
Open Source platform for Sensory Tasks project (RRID:SCR_021468) | project portal, data or information resource, portal, instrument resource | Project related to report animal decision in response to stimulus.Includes software tool as Arduino and Python based platform for Go or No Go sensory task to report animal decision in response to stimulus provided by University of Melbourne, Melbourne, VIC, Australia scientists. | Go or No Go sensory task, report animal decision, stimulus response, OpenBehavior, Instrument | is listed by: OpenBehavior | DOI:10.3389/fncel.2017.00156 | Free, Freely available | SCR_021468 | Open Source platform for Sensory Tasks | 2026-07-31 09:28:38 | 0 | ||||||||
|
COMPASS Resource Report Resource Website 100+ mentions |
COMPASS (RRID:SCR_022329) | project portal, data or information resource, portal, instrument resource | Non invasive, infrared activity and sleep measurement system that uses passive infrared sensors and Arduino microprocessor. Publication provides protocol for assembling COMPASS as well as provides support protocols and python scripts for data analysis, best practices for optimum results, troubleshooting, and alternative protocols for different use scenarios. | OpenBehavior, Instrument, behavior apparatus, behavior measurement, sleep tracking, infrared sensors, Arduino microprocessor | is listed by: OpenBehavior | DOI:10.1002/cpmo.81 | https://github.com/MRC-Harwell/sleep-tracking | SCR_022329 | Continuous Open Mouse Phenotyping of Activity and Sleep Status | 2026-07-31 09:28:52 | 264 | ||||||||
|
TetrODrive Resource Report Resource Website |
TetrODrive (RRID:SCR_022326) | project portal, data or information resource, portal, instrument resource | 3D printed microdrive for electrophysiology and optophysiology. Consists of main body and head. Used for in vivo tetrode recording, optical imaging, and optogenetic manipulation in freely moving mice.Design files and build instructions for this device can be found on TetrODrive GitHub.Microdrive can be assembled in 15 min and price for all materials, including 3D printer, is lower than single commercial microdrive. | OpenBehavior, Instrument, microdrive, behavior measurement, freely moving, neural recording, electrical recording, optical imaging, neural modulation, optogenetics | is listed by: OpenBehavior | DOI:10.1088/1741-2552/abf608 | Free, Freely available | https://github.com/MarcelMB/TetrODrive | SCR_022326 | 2026-07-31 09:28:52 | 0 | ||||||||
|
pyOS-5 project Resource Report Resource Website |
pyOS-5 project (RRID:SCR_022335) | project portal, data or information resource, portal, instrument resource | Open source operant box system optimized for use with tethered animals. System includes hardware and software. Control electronics are build on pyControl, controlling custom PCB integrating 5 infra-red break-beam sensors and 5 stimulus LEDs, single nose-poke for reward receptacle, stepper motor for control of custom peristaltic pump for reward delivery, audio board for tone generation through attached speaker, house light and fan, LED driver for optogenetic stimulation, and bidirectional communication with external devices via TTL pulses. | OpenBehavior, Instrument, operant box system, tethered animals, behavior apparatus, neurophysiology |
is listed by: OpenBehavior is related to: pyOS-5 |
DOI:10.1038/s41598-021-01717-1 | Free, Freely available | SCR_022335 | Python based operant box system in 5-choice design, pyOS-5 | 2026-07-31 09:29:00 | 0 | ||||||||
|
MRI Compatible Microdrive Resource Report Resource Website |
MRI Compatible Microdrive (RRID:SCR_022352) | project portal, data or information resource, portal, instrument resource | MRI compatible microdrive that can precisely position electrodes without causing significant imaging artifacts. | OpenBehavior, Instrument, device, microdrive, neural signal analysis, neural recording, electrical recording, electrode precisely positioning, MRI compatible equipment | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0495-20.2021 | Free, Freely available | https://osf.io/tnpmk/ | SCR_022352 | 2026-07-31 09:28:50 | 0 | ||||||||
|
Neonatal Stereotaxic Mouse Adaptor Resource Report Resource Website |
Neonatal Stereotaxic Mouse Adaptor (RRID:SCR_022349) | project portal, data or information resource, portal, instrument resource | 3D printed device for stereotaxic viral delivery into brains of neonatal mice.Used for stable and precise stereotaxic surgery in neonatal mice. | OpenBehavior, Instrument, 3D printed device, stable and precise 3D printed device for stable and precise stereotaxic surgery in neonatal mice, stereotaxic surgery, neonatal mice | is listed by: OpenBehavior | DOI:10.2144/btn-2020-0050 | Free, Freely available | SCR_022349 | 2026-07-31 09:28:50 | 0 | |||||||||
|
LED Matrix Stimuli Resource Report Resource Website |
LED Matrix Stimuli (RRID:SCR_022345) | project portal, data or information resource, portal, instrument resource | Open source device consists of three LED matrices that can be independently controlled via open source Arduino Uno microcontroller. Matrices of LEDs are mounted above nose pokes to examine perceptual decision making in rats. Highly modifiable LED matrices for visual stimulus presentation in behavioral studies.Designs for printing these accessory devices are available in GitHub account for the project. | OpenBehavior, Instrument, device, behavior apparatus, behavioral task, perceptual decision making in rats |
is listed by: OpenBehavior has parent organization: American University; Washington D.C.; USA |
DOI:10.1523/ENEURO.0563-20.2021 | Free, Freely available | https://github.com/LaubachLab/LED-matrices | SCR_022345 | 2026-07-31 09:28:52 | 0 | ||||||||
|
Closed Loop Automated Reaching Apparatus Resource Report Resource Website 1+ mentions |
Closed Loop Automated Reaching Apparatus (RRID:SCR_022365) | CLARA | project portal, data or information resource, portal, instrument resource | Closed loop automated reaching apparatus for interrogating complex motor behaviors.Mechanical components include behavior box, series of cameras, and food pellet dispenser. Single workstation computer manages cameras, communicates with microcontroller, and analyzes mouse behavior in real time using modules extracted from DeepLabCut. Integrates fully automated, markerless kinematic tracking of multiple features to classify animal behavior and delivers neural stimulation based on behavioral outcomes. CLARA is compatible with advanced neurophysiological tools, enabling testing of neurostimulation devices and identification of novel neurological biomarkers.System fully automates trial initiation and pellet delivery and is capable of accurately delivering stimulation in response to trial outcome with short latency. | OpenBehavior, Instrument, interrogating complex motor behaviors apparatus, mouse behavior apparatus, markerless kinematic tracking, kinematic data, animal behavior, neural stimulation |
is listed by: OpenBehavior is related to: Behavioral Segmentation of Open-field in DeepLabCut has parent organization: University of Colorado School of Medicine; Colorado; USA |
DOI:10.1088/1741-2552/ac1ed1 | Free, Freely available | https://github.com/wryanw/CLARA_DLC | SCR_022365 | Closed Loop Automated Reaching Apparatus Project | 2026-07-31 09:28:51 | 1 | ||||||
|
Florida research open source synchronization tool Resource Report Resource Website |
Florida research open source synchronization tool (RRID:SCR_022344) | FROST | project portal, data or information resource, portal, instrument resource | Open source system built around Arduino based microcontroller for analog and digital input and synchronization combined with custom printed circuit board. Hardware and Arduino-based firmware used to synchronize experimental and electrophysiological data. | OpenBehavior, Instrument, device, synchronization tool, electrophysiology experiments, neural signal analysis, neural recording, electrical recording, synchronizing experimental and electrophysiological data. |
is listed by: OpenBehavior has parent organization: University of Florida; Florida; USA |
DOI:10.1016/j.jneumeth.2020.108800 | Free, Freely available | https://github.com/Brain-Mapping-Lab/FROST | SCR_022344 | FROST project | 2026-07-31 09:29:01 | 0 | ||||||
|
pyPhotometry Resource Report Resource Website 1+ mentions |
pyPhotometry (RRID:SCR_022940) | project portal, data or information resource, portal, instrument resource | Open source Python based hardware and software for fiber photometry data acquisition. System includes compact, low cost, data acquisition board built around Micropython microcontroller, and cross platform graphical user interface for controlling acquisition and visualising signals. Can acquire two analog and two digital signals, and control two external LEDs via built in LED drivers. Time division multiplexed illumination allows independent readout of fluorescence evoked by different excitation wavelengths from single photoreceiver signal. | OpenBehavior, instrument, fiber photometry, Micropython microcontroller, analog control signals, data acquisition and analysis | is listed by: OpenBehavior | PMID:30837543 | Free, Available for download, Freely available | https://github.com/pyPhotometry | SCR_022940 | 2026-07-31 09:29:05 | 3 | ||||||||
|
USVCAM Resource Report Resource Website |
USVCAM (RRID:SCR_022747) | project portal, data or information resource, portal, instrument resource | Open source acoustic camera system for measuring ultrasound communication in rodents. System includes small phased microphone array combined with camera and comprises USV segmentation algorithms with modification for overlapping vocalizations that results in high accuracy. Enables simpler and faster USV localization and assignment. | OpenBehavior, instrument, acoustic camera system, measuring ultrasound communication in rodents |
is listed by: OpenBehavior has parent organization: University of Toyama; Toyama; Japan |
PMID:35982786 | Free, Freely available | https://edspace.american.edu/openbehavior/?s=USVCAM | SCR_022747 | USVCAM project, ultrasonic vocalizations camera | 2026-07-31 09:28:55 | 0 | |||||||
|
Agilent Technologies Resource Report Resource Website 10000+ mentions |
Agilent Technologies (RRID:SCR_013575) | commercial organization, antibody supplier, reagent supplier, material resource | Company provides laboratories worldwide with analytical instruments and supplies, clinical and diagnostic testing services, consumables, applications and expertise in life sciences and applied chemical markets. | instrument, service, software, supply, expertise, life science, clinical, diagnostic, testing, reagent, market, |
is parent organization of: Seahorse Wave is parent organization of: Agilent Feature Extraction Software is parent organization of: Agilent Masshunter Quantitative Analysis software is parent organization of: Agilent ChemStation Software is parent organization of: Agilent MassHunter WorkStation - Qualitative Analysis for GC/MS has organization facet: Dako |
nlx_152258 | SCR_013575 | 2026-07-31 09:27:20 | 45936 | ||||||||||
|
ECIS Model Resource Report Resource Website 1+ mentions |
ECIS Model (RRID:SCR_016367) | ECIS | data analysis software, data management software, data acquisition software, software application, data processing software, software resource | Instrument that electronically monitors cells grown in tissue culture. It is a real-time, label-free, impedance-based method to study the activities of cells. Used for analysis in cell biological dynamics for cells that do not form tight monolayers such as cancer cell lines. The system supports communication to a PC, allowing data acquisition, analysis, and storage. | instrument, Applied BioPhysics, cell, morphological, biosensor, tissue, culture, migration, growth, analyze, laboratory, equipment, hardware | Commercially available | SCR_016367 | Electric Cell-substrate Impedance Sensing Model, Electric Cell-substrate Impedance Sensing | 2026-07-31 09:27:58 | 3 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the dkNET Resources search. From here you can search through a compilation of resources used by dkNET and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that dkNET has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on dkNET then you can log in from here to get additional features in dkNET such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into dkNET you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
Email: info_at_ dknet.org
