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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
https://edspace.american.edu/openbehavior/project/frost/
Open source system built around Arduino based microcontroller for analog and digital input and synchronization combined with custom printed circuit board. Hardware and Arduino-based firmware used to synchronize experimental and electrophysiological data.
Proper citation: Florida research open source synchronization tool (RRID:SCR_022344) Copy
https://edspace.american.edu/openbehavior/project/pyos-5/
Open source operant box system optimized for use with tethered animals. System includes hardware and software. Control electronics are build on pyControl, controlling custom PCB integrating 5 infra-red break-beam sensors and 5 stimulus LEDs, single nose-poke for reward receptacle, stepper motor for control of custom peristaltic pump for reward delivery, audio board for tone generation through attached speaker, house light and fan, LED driver for optogenetic stimulation, and bidirectional communication with external devices via TTL pulses.
Proper citation: pyOS-5 project (RRID:SCR_022335) Copy
https://edspace.american.edu/openbehavior/?s=pyPhotometry
Open source Python based hardware and software for fiber photometry data acquisition. System includes compact, low cost, data acquisition board built around Micropython microcontroller, and cross platform graphical user interface for controlling acquisition and visualising signals. Can acquire two analog and two digital signals, and control two external LEDs via built in LED drivers. Time division multiplexed illumination allows independent readout of fluorescence evoked by different excitation wavelengths from single photoreceiver signal.
Proper citation: pyPhotometry (RRID:SCR_022940) Copy
https://github.com/MatsumotoJ/usvcam
Open source acoustic camera system for measuring ultrasound communication in rodents. System includes small phased microphone array combined with camera and comprises USV segmentation algorithms with modification for overlapping vocalizations that results in high accuracy. Enables simpler and faster USV localization and assignment.
Proper citation: USVCAM (RRID:SCR_022747) Copy
Company provides laboratories worldwide with analytical instruments and supplies, clinical and diagnostic testing services, consumables, applications and expertise in life sciences and applied chemical markets.
Proper citation: Agilent Technologies (RRID:SCR_013575) Copy
https://www.intermedical.jp/eng/med_products/512728/
This equipment is used for the purpose of monitoring fetal status.
Proper citation: Toitu MT 325 fetal actocardiograph (RRID:SCR_016438) Copy
Instrument that electronically monitors cells grown in tissue culture. It is a real-time, label-free, impedance-based method to study the activities of cells. Used for analysis in cell biological dynamics for cells that do not form tight monolayers such as cancer cell lines. The system supports communication to a PC, allowing data acquisition, analysis, and storage.
Proper citation: ECIS Model (RRID:SCR_016367) Copy
https://edspace.american.edu/openbehavior/project/nerd/
Portal provides open source neural recording device for wireless transmission of local field potential data in freely behaving animals. Used for electrophysiological recording of local field potentials in freely behaving animals.
Proper citation: NeRD (RRID:SCR_021582) Copy
https://edspace.american.edu/openbehavior/project/ninscope/
Portal provides miniscope for fluorescence imaging and optogenetic stimulation. Used for monitoring of neural signals during unrestrained behavior.
Proper citation: NINscope (RRID:SCR_021577) Copy
https://edspace.american.edu/openbehavior/project/3d-printed-headcap-microdrive/
Portal provides novel head cap and microdrive design for chronic multi electrode recordings in rats through use of 3D printing technology. Head cap and microdrive designs can be fabricated at little cost using consumer grade 3D printers.
Proper citation: 3D Printed Headcap and Microdrive (RRID:SCR_021595) Copy
https://edspace.american.edu/openbehavior/project/multicam-headmount/
Portal provides system of two multi camera head mounts for mice in order to record physiological changes in certain behaviors. System used for video tracking of rodents behavior.
Proper citation: A Head Mounted Multi Camera System for Freely Moving Mice project (RRID:SCR_021591) Copy
https://edspace.american.edu/openbehavior/project/microwave-based-homecage-motion-detector/
Portal provides radar based motion detector for home cage activity monitoring in mice. System is used for motion detection without visual contact to animal and can be used with various cage types. Features custom printed circuit board and motion detector shield for Arduino, which saves raw activity and timestamped data in CSV files onto SD card.Developed by Max Planck Institute of Psychiatry scientists. Authors also provide Python script for data analysis and generation of actograms.
Proper citation: Microwave based Homecage Motion Detector project (RRID:SCR_021590) Copy
Portal provides open source lickometer that utilizes readily available or customizable components such as PC sound card and 3D printed drinking bottle holder. System consists of apparatus itself and open source software to collect and analyze data. Recording of raw data is handled by Audacity, open source audio program.
Proper citation: An Opensource lickometer and microstructure analysis program (RRID:SCR_021589) Copy
https://edspace.american.edu/openbehavior/project/pried/
Portal provides open Source 3-D Printed Modular micro drive system for acute primate neurophysiology.
Proper citation: PRiED (RRID:SCR_021586) Copy
https://edspace.american.edu/openbehavior/project/automated-home-cage-functional-imaging/
Portal provides automated system for mesoscopic functional imaging that allows subjects to self initiate head fixation and imaging within home cage. Developed by University of British Columbia scientists. System for automated head fixation within mouse home cages.
Proper citation: Automated Home-Cage Functional Imaging project (RRID:SCR_021567) Copy
https://sro.txst.edu/sro-facilities/sro-nrsc/sro-nrsc-tztf.html
Custom system intended for flexible annealing or chemical vapor deposition processing at temperatures < 1000oC. Process and/or purge gases (Ar, 4%H2 in Ar, N2) are introduced via a manifold into the quartz tube at either atmospheric or sub-atmospheric pressures. The maximum sample size is 60mm (~2").
Proper citation: Texas State University 3-Zone Tube Furnace (RRID:SCR_028192) Copy
Design and analysis software enables user to set up runs, send plates to the specific instrument, open completed run files, and analyze and review data in integrated and streamlined fashion. Software can be run with security, audit, and e-signature (SAE) enabled. The software also provides suite of analysis modules for secondary analysis and comes with multi-language support.
Proper citation: Design and Analysis (DA2) software (RRID:SCR_026962) Copy
https://www.motic.com/As_MoticEasyScanPro6/product_908.html
MoticEasyScan Pro scanner system scans up to 6 slides in one click and uploads digital slides to your slide management server. Ideal for any application that requires glass slide digitization.
Proper citation: Motic: MoticEasyScan Pro 6-FS (RRID:SCR_024851) Copy
https://www.motic.com/As_MoticEasyScanInfinity/product_907.html
Scanning solution for high volume scanning. Scanner system scans up to 60 slides in just one click, providing scanning at 20X and40X magnifications with Infinity Scanning design, slides can be added to the system at any time, without interrupting the scanning process.
Proper citation: Motic: MoticEasyScan Infinity 60 (RRID:SCR_024853) Copy
https://www.motic.com/As_MoticEasyScan_One1/product_909.html
Compact scanner for any digital slide application. This scanning system with FS-Live software suite, optimized for frozen section, cytology, ROSE, and FNA adequacy evaluation, for remote pathologist to pilot the system and provide diagnosis without travel time.
Proper citation: Motic: MoticEasyScan One (RRID:SCR_024855) Copy
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