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http://nextgenseq.blogspot.de/
A working guide to the rapidly developing world of Next-Generation DNA sequencing, with an emphasis on bioinformatics.
Proper citation: Next-Gen Sequencing (RRID:SCR_007245) Copy
http://www.ebi.ac.uk/Tools/sss/wublast/
Tool to find regions of sequence similarity within selected protein databases quickly, with minimum loss of sensitivity.
Proper citation: WU-BLAST (RRID:SCR_011824) Copy
This blog will appeal to those dealing with the practical day to day work of biological data analysis and presentation.
Proper citation: Blue Collar Bioinformatics (RRID:SCR_012913) Copy
http://www.ebi.ac.uk/ena/search/
A nucleotide sequence similiary search tool which is far faster than BLAST for large datasets, with only a marginal loss in search sensitivity.
Proper citation: ENA Sequence Search (RRID:SCR_013170) Copy
http://www.benoslab.pitt.edu/comir/
Data analysis service that predicts whether a given mRNA is targeted by a set of miRNAs. ComiR uses miRNA expression to improve and combine multiple miRNA targets for each of the four prediction algorithms: miRanda, PITA, TargetScan and mirSVR. The composite scores of the four algorithms are then combined using a support vector machine trained on Drosophila Ago1 IP data.
Proper citation: ComiR (RRID:SCR_013023) Copy
A web-server for fast comparative functional profiling of metagenomes.
Proper citation: CoMet (RRID:SCR_011925) Copy
http://tools.genxpro.net/omiras/
A web server for the annotation, comparison and visualization of interaction networks of non-coding RNAs derived from small RNA-Sequencing experiments of two different conditions.
Proper citation: omiRas (RRID:SCR_010833) Copy
http://phylopythias.bifo.helmholtz-hzi.de/index.php?phase=wait
Web Server for Taxonomic Assignment of Metagenome Sequences that is a fast and accurate sequence composition-based classifier that utilizes the hierarchical relationships between clades. Taxonomic assignments with the web server can be made with a generic model, or with sample-specific models that users can specify and create. Several interactive visualization modes and multiple download formats allow quick and convenient analysis and downstream processing of taxonomic assignments.
Proper citation: PhyloPythiaS (RRID:SCR_011923) Copy
http://compbio.med.harvard.edu/CGHweb/
Data analysis service enabling users to analyse their array-CGH data with multiple algorithms simultaneously.
Proper citation: CGHweb (RRID:SCR_010923) Copy
A web-based platform for functional interpretation of gene sets with features such as cross-species Gene Set Analysis (GSA), Flexible and Interactive GSA, simultaneous GSA for multiple gene set, and and a fully integrated network viewer for both visualizing GSA results and molecular networks.
Proper citation: gsGator (RRID:SCR_012035) Copy
http://agvgd.iarc.fr/index.php
A freely available, web-based program that combines the biophysical characteristics of amino acids and protein multiple sequence alignments to predict where missense substitutions in genes of interest fall in a spectrum from enriched delterious to enriched neutral.
Proper citation: Align-GVGD (RRID:SCR_010772) Copy
http://core-genomics.blogspot.de/
This blog focusses on next-generation sequencing and microarray technologies.
Proper citation: CoreGenomics (RRID:SCR_011985) Copy
A leading source of news on technology and innovation in life sciences IT, informatics, genomics, next-gen, drug discovery, development, and clinical trials.
Proper citation: Bio-IT World (RRID:SCR_011986) Copy
http://www.mutationtaster.org/
Evaluates disease-causing potential of sequence alterations.
Proper citation: MutationTaster (RRID:SCR_010777) Copy
We share commentaries, news and announcement that advance our goal of helping clinical labs to adopt next generation sequencing for the analysis of diagnostic gene targets.
Proper citation: Omixon blog (RRID:SCR_010020) Copy
http://hyperbrowser.uio.no/hb/
A generic web-based system, providing statistical methodology and computing power to handle a variety of biological inquires on genomic datasets.
Proper citation: Genomic HyperBrowser (RRID:SCR_010909) Copy
http://weizhong-lab.ucsd.edu/metagenomic-analysis/
A customizable web server for fast metagenomic analysis.
Proper citation: WebMGA (RRID:SCR_011951) Copy
Blog including established profound know-how and proprietary protocols to cover a broad range of applications.
Proper citation: NGS Expert Blog (RRID:SCR_013218) Copy
A sequence verification pipeline where users can submit trace files to verify if a clone''s physical sequence matches its reference sequence.
Proper citation: GenoREAD (RRID:SCR_012007) Copy
http://cdwscience.blogspot.fr/
A blog about genetics, genomics, and medical research.
Proper citation: My Biomedical Informatics Blog (RRID:SCR_012011) Copy
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