Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
oneClickCGH Resource Report Resource Website |
oneClickCGH (RRID:SCR_000294) | oneClickCGH | data analysis software, data processing software, software application, software resource | Platform-independent array copy number analysis software that provides straightforward yet comprehensive detection and reporting of copy number changes. | array, comparative genomic hybridization, cytogenetics, copy number variant, copy number analysis, | is listed by: OMICtools | Restricted | OMICS_02050 | SCR_000294 | SciCrunch Registry | 2026-10-31 12:12:36 | 0 | ||||||||
|
fqzcomp Resource Report Resource Website 1+ mentions |
fqzcomp (RRID:SCR_000299) | fqzcomp | software resource | A basic fastq compressor, designed primarily for high performance. | c++ |
is listed by: OMICtools has parent organization: SourceForge |
PMID:23533605 | Free, Available for download, Freely available | OMICS_00957 | SCR_000299 | SciCrunch Registry | 2026-10-31 12:12:36 | 1 | |||||||
|
Defense Advanced Research Projects Agency Resource Report Resource Website 1+ mentions |
Defense Advanced Research Projects Agency (RRID:SCR_000330) | DARPA | nonprofit organization | A military affiliated research institute which focuses on funding and approving new and ongoing programs while ensuring a balanced investment portfolio. This organization is mainly concerned with making investments in technologies that can be used for national security. | national security, technology, grant. investment portfolio, investments, funding, government granting agency | has parent organization: U.S. Department of Defense | Crossref funder ID: 100000185, grid.421816.8, nlx_152039, ISNI: 0000 0000 9580 5207, Wikidata: Q207361 | https://ror.org/02caytj08 | SCR_000330 | SciCrunch Registry | 2026-10-31 12:12:36 | 9 | ||||||||
|
Indeed Resource Report Resource Website 1+ mentions |
Indeed (RRID:SCR_000292) | Indeed | job resource | A database of job listings | employment, career |
is used by: NIF Data Federation is related to: Integrated Jobs |
nlx_144165 | SCR_000292 | SciCrunch Registry | Indeed.com, indeed: one search. all jobs | 2026-10-31 12:12:36 | 2 | ||||||||
|
IGOR Pro Resource Report Resource Website 500+ mentions |
IGOR Pro (RRID:SCR_000325) | authoring tool, data analysis software, data processing software, data visualization software, software application, software resource | Software used for visualizing and graphing data, image processing, and programming. It is designed for use by scientists and engineers and supports large data sets, evenly spaced data, and various data import formats. The software includes a suite of image processing operations for image filtering, manipulation, and quantification and is completely programmable. | commercial tool, electrophysiology, authoring tool, data visualization software, image processing, publication quality, interactive | is listed by: SoftCite | Restricted | nlx_156887, SCR_014216 | SCR_000325 | SciCrunch Registry | Igor Pro - Technical graphing and data analysis, Igor Software | 2026-10-31 12:12:36 | 680 | ||||||||
|
pFind Studio: pLink Resource Report Resource Website 10+ mentions |
pFind Studio: pLink (RRID:SCR_000084) | pLink | software resource | Software dedicated for the analysis of chemically cross-linked proteins or protein complexes using mass spectrometry., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | mass spectrometry, proteomics, pFind Studio, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: Chinese Academy of Sciences; Beijing; China |
PMID:22772728 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_02404, biotools:pLink-2 | https://github.com/pFindStudio/pLink3/releases | http://pfind.ict.ac.cn/software/pLink/index.html | SCR_000084 | SciCrunch Registry | , pLink, pLink (pFind Studio), pLink2 | 2026-10-31 12:12:34 | 15 | ||||
|
Spotfinder Resource Report Resource Website 1+ mentions |
Spotfinder (RRID:SCR_000085) | Spotfinder | software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. Software designed for the rapid, reproducible and computer-aided analysis of microarray images and the quantification of gene expression. | c++ |
is listed by: OMICtools has parent organization: Dana-Farber Cancer Institute |
THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00848 | SCR_000085 | SciCrunch Registry | TIGR Spotfinder | 2026-10-31 12:12:33 | 8 | |||||||
|
Faceted Search Based Ontology Visualizer Resource Report Resource Website |
Faceted Search Based Ontology Visualizer (RRID:SCR_000124) | ontologyviz | software resource | Software that allows user to do faceted search on an ontology and enables visualization of the search results on the 3D digital atlas. Currently supports faceted search of functional neuroanatomy. | computational neuroscience, magnetic resonance, ontology, functional neuroanatomy, facet, visualization | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Free, Freely available | nlx_155874 | SCR_000124 | SciCrunch Registry | 2026-10-31 12:12:34 | 0 | ||||||||
|
GOALIE Resource Report Resource Website |
GOALIE (RRID:SCR_000088) | GOALIE | software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 2, 2016. Generalized Ontological Algorithmic Logical Invariants Extractor (GOALIE) is a tool for the construction of time-course dependent enrichments. Requires an ODBC connection to an instance of the GO database. Platform: Windows compatible, Mac OS X compatible, Linux compatible | gene ontology, statistical analysis, time-course |
is listed by: Gene Ontology Tools has parent organization: NYU Bioinformatics Group |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_149255 | SCR_000088 | SciCrunch Registry | Generalized Ontological Algorithmic Logical Invariants Extractor, Generalized Ontological Algorithmic Logical Invariants Extractor (GOALIE) | 2026-10-31 12:12:33 | 0 | |||||||
|
Parallel-META Resource Report Resource Website 1+ mentions |
Parallel-META (RRID:SCR_000121) | data analysis software, data processing software, software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 30,2023. Open source pipeline for metagenomic data analysis, which enables efficient and parallel analysis of multiple metagenomic datasets and visualization of results for multiple samples. Can perform rapid data mining among microbial community data for comparative taxonomic and functional analysis. | data mining, microbial community data, comparative taxonomics, metagenomic analysis, parallel algorithms | is listed by: OMICtools | PMID:23046922 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01519 | SCR_000121 | SciCrunch Registry | Parallel META, Parallel Meta | 2026-10-31 12:12:34 | 4 | |||||||
|
Adaptively Sampled Particle Fluids Resource Report Resource Website |
Adaptively Sampled Particle Fluids (RRID:SCR_000083) | ASPF | simulation software, software application, software resource, source code | Scalable particle fluid simulation code for Lagrangian particle-based fluid simulation. This adaptive sampling strategy allows using smaller (and thus more) particles in geometrically complex regions, while less particles are used for thick flat fluid volumes. Additionally, a novel distance-based particle surface definition is implemented which hides the particle granularity and allows dynamic resampling near the fluid-air interface. The code is implemented in C++ and should compile on Linux. | fluid simulation, lagrangian particle fluid, linux |
is listed by: Biositemaps is listed by: Simtk.org |
Free, Available for download, Freely available | nif-0000-23328 | SCR_000083 | SciCrunch Registry | 2026-10-31 12:12:33 | 0 | ||||||||
|
BioLemmatizer Resource Report Resource Website 1+ mentions |
BioLemmatizer (RRID:SCR_000117) | software resource | A domain-specific lemmatization software tool for the morphological analysis of biomedical literature. | standalone software |
is listed by: OMICtools has parent organization: SourceForge |
PMID:22464129 | Free, Available for download, Freely available | OMICS_04827 | https://sourceforge.net/projects/biolemmatizer/ | SCR_000117 | SciCrunch Registry | 2026-10-31 12:12:34 | 2 | |||||||
|
Orphelia Resource Report Resource Website 1+ mentions |
Orphelia (RRID:SCR_000119) | simulation software, software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 23,2022. A metagenomic open reading frame (ORF) finding tool for the prediction of protein coding genes in short, environmental DNA sequences with unknown phylogenetic origin. The resource is based on a two-stage machine learning approach that uses linear discriminants to extract features from the ORFs. An artificial neural network then combines the features and computes a gene probability for each ORF fragment. | metagenomic open reading frame, tool, resource, protein, genes, DNA, phyologenetic origin, machine learning, linear discriminates, artificial neural network, computation, scientific computing, fragment | is listed by: OMICtools | PMID:19429689 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01492 | SCR_000119 | SciCrunch Registry | 2026-10-31 12:12:34 | 2 | ||||||||
|
ReQON Resource Report Resource Website |
ReQON (RRID:SCR_000075) | ReQON | software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. Algorithm for recalibrating the base quality scores for aligned sequencing data in BAM format. | preprocessing, quality control, sequencing |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:22946927 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_02033 | SCR_000075 | SciCrunch Registry | Recalibrating Quality Of Nucleotides | 2026-10-31 12:12:33 | 0 | ||||||
|
QuadGT Resource Report Resource Website 1+ mentions |
QuadGT (RRID:SCR_000073) | QuadGT | software resource | Software package for calling single-nucleotide variants in four sequenced genomes comprising a normal-tumor pair and the two parents. Genotypes are inferred using a joint model of parental variant frequencies, de novo germline mutations, and somatic mutations. The model quantifies the descent-by-modification relationships between the unknown genotypes by using a set of parameters in a Bayesian inference setting. Note that you can use it on any subset of the four related genomes, including parent-offspring trios, and normal-tumor pairs without parental samples. | single-nucleotide variant, sequenced genome, genotype, genome |
is listed by: OMICtools has parent organization: University of Montreal; Quebec; Canada |
Normal, Tumor, Cancer | Canada National Sciences and Engineering Research Council ; Canadian Institutes for Health Research ; Terry Fox Research Institute |
PMID:23734724 | Free, Available for download, Freely available | OMICS_02108 | SCR_000073 | SciCrunch Registry | 2026-10-31 12:12:33 | 1 | |||||
|
Google Sites Resource Report Resource Website 1+ mentions |
Google Sites (RRID:SCR_000112) | Sites | service resource | A free online service to easily create and share webpages. | website, sharing, authoring tool |
is parent organization of: PELICAN is parent organization of: dbNSFP |
Free | nlx_157257 | SCR_000112 | SciCrunch Registry | 2026-10-31 12:12:34 | 2 | ||||||||
|
SOAPfuse Resource Report Resource Website 1+ mentions |
SOAPfuse (RRID:SCR_000078) | SOAPfuse | software resource | THIS RESOURCE IS NO LONGER IN SERVICE.Documented on August 23,2022. An open source tool developed for genome-wide detection of fusion transcripts from human being paired-end RNA-Seq data. This tool is a part of a larger set of tools to efficiently align oligonucleotides onto reference sequences . | software, resource, open license, DNA sequencing, genome, transcripts, RNA, oligonucleotide |
is listed by: OMICtools is listed by: SourceForge is listed by: SOAP |
PMID:23409703 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01357 | SCR_000078 | SciCrunch Registry | 2026-10-31 12:12:33 | 7 | |||||||
|
Genemed Resource Report Resource Website 1+ mentions |
Genemed (RRID:SCR_000070) | commercial organization | A supplier of cancer and infectious disease diagnostic reagents. The company also provides services such as tissue-based and molecular diagnostics to their partners to accelerate their in vitro diagnostic device (IVD) product development and commercialization. | antibody, diagnostic, research, development, commercialization, in vitro diagnostic device, IVD, cancer, infectious diseases | Commercial | nlx_152371 | SCR_000070 | SciCrunch Registry | 2026-10-31 12:12:33 | 1 | ||||||||||
|
University of California at San Diego Cognitive Science Graduate Student Fellowship Opportunities Resource Report Resource Website |
University of California at San Diego Cognitive Science Graduate Student Fellowship Opportunities (RRID:SCR_000105) | funding resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. This resource is a frequently updated listing of graduate student in cognitive science fellowship opportunities. For current opportunities, please see the PDF document. | psychology | has parent organization: University of California at San Diego; California; USA | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10500 | SCR_000105 | SciCrunch Registry | UCSD Cognitive Science Fellowships | 2026-10-31 12:12:33 | 0 | ||||||||
|
National MS Society Resource Report Resource Website 10+ mentions |
National MS Society (RRID:SCR_000104) | National MS Society | data or information resource, disease-related portal, funding resource, portal, topical portal | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. Society helps people affected by Multiple Sclerosis by funding cutting-edge research, driving change through advocacy, facilitating professional education, and providing programs and services that help people with MS and their families move their lives forward. | multiple sclerosis, award, grant, postdoctoral fellowship | Multiple Sclerosis | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_143693 | SCR_000104 | SciCrunch Registry | National Multiple Sclerosis Society | 2026-10-31 12:12:33 | 34 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the dkNET Resources search. From here you can search through a compilation of resources used by dkNET and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that dkNET has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on dkNET then you can log in from here to get additional features in dkNET such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into dkNET you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
Email: info_at_ dknet.org
