Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
University of Southern Queensland; Queensland; Australia Resource Report Resource Website |
University of Southern Queensland; Queensland; Australia (RRID:SCR_000374) | university | A public university in Australia that offers degree programs in business, law and education as well as health, engineering and the sciences at the undergraduate level. The university also does research at three research institutes and seven research centers which focus on a wide range of business, agricultural, scientific, environmental, and technological issues. | public, business, law, education, health, engineering, sciences, research, agriculture, technology, environment |
is parent organization of: Australian Digital Futures Institute is parent organization of: Fascinator is parent organization of: Integrated Content Environment |
ISNI:0000 0004 0473 0844, Wikidata:Q978124, nlx_46605, grid.1048.d, Crossref funder ID:501100001795 | https://ror.org/04sjbnx57 | SCR_000374 | SciCrunch Registry | USQ | 2026-10-31 12:12:37 | 0 | ||||||||
|
rTANDEM Resource Report Resource Website |
rTANDEM (RRID:SCR_000409) | software resource | An R/Bioconductor package that interfaces the X!Tandem protein identification algorithm. | standalone software, mac os x, unix/linux, windows, r, mass spectrometry, proteomics |
is used by: shinyTANDEM is listed by: OMICtools has parent organization: Bioconductor |
PMID:24700319 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_03516 | SCR_000409 | SciCrunch Registry | rTANDEM - Interfaces the tandem protein identification algorithm in R | 2026-10-31 12:12:38 | 0 | |||||||
|
Allegheny College; Pennsylvania; USA Resource Report Resource Website |
Allegheny College; Pennsylvania; USA (RRID:SCR_000369) | university | A private liberal arts college that offers degrees in social sciences, humanities and natural sciences at the undergraduate level. | private, liberal arts, social science, humanities, natural sciences, undergraduate | is parent organization of: Allegheny College Neuroscience | nlx_40570 | SCR_000369 | SciCrunch Registry | 2026-10-31 12:12:37 | 0 | ||||||||||
|
NucleoFinder Resource Report Resource Website 1+ mentions |
NucleoFinder (RRID:SCR_000368) | NucleoFinder | software resource | A software for a statistical approach for the detection of nucleosome positions in a cell population. The software identifies important features of nucleosome organization such as the spacing downstream of active promoters and the enrichment and depletion of GC/AT dinucleotides of in vitro nucleosomes. | nucleusome, position, promoter, analysis, downstream, nucleotide, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian |
PMID:23297036 | THIS RESOURCE IS NO LONGER IN SERVICE | biotools:nucleofinder, OMICS_00510 | https://omictools.com/nucleofinder-tool, https://bio.tools/nucleofinder | SCR_000368 | SciCrunch Registry | 2026-10-31 12:12:37 | 1 | ||||||
|
flowPeaks Resource Report Resource Website |
flowPeaks (RRID:SCR_000407) | software resource | Software for fast and automatic clustering to classify the cells into subpopulations based on finding the peaks from the overall density function generated by K-means. | software package, mac os x, unix/linux, windows, r, clustering, flow cytometry, gating, bio.tools |
is listed by: OMICtools is listed by: GitHub is listed by: bio.tools is listed by: Debian has parent organization: Bioconductor |
PMID:22595209 | Free, Available for download, Freely available | biotools:flowpeaks, OMICS_05604 | http://www.bioconductor.org/packages/devel/bioc/html/flowPeaks.html, https://bio.tools/flowpeaks | SCR_000407 | SciCrunch Registry | 2026-10-31 12:12:38 | 0 | |||||||
|
TNO-DECO Resource Report Resource Website |
TNO-DECO (RRID:SCR_000440) | software resource | Matlab code for preprocessing gas chromatography mass spectrometry data. | matlab, mass spectrometry | is listed by: OMICtools | Free, Available for download, Freely available | OMICS_02660 | SCR_000440 | SciCrunch Registry | 2026-10-31 12:12:38 | 0 | |||||||||
|
MiRdup Resource Report Resource Website 1+ mentions |
MiRdup (RRID:SCR_000316) | software resource | A software used for the validation of pre-miRNAs predictions as well as predict the final structure of mature miRNA. | pre-miRNA, miRNA, mRNA, splicing, predictions |
is listed by: OMICtools has parent organization: McGill University; Montreal; Canada |
PMID:23748953 | Free, Available for download, Freely available | OMICS_00404 | https://www.cs.mcgill.ca/~blanchem/mirdup/ | http://This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or any later version. | SCR_000316 | SciCrunch Registry | 2026-10-31 12:12:36 | 1 | ||||||
|
WILEY Interdisciplinary Reviews Resource Report Resource Website |
WILEY Interdisciplinary Reviews (RRID:SCR_000392) | WIREs | data or information resource, portal, topical portal | Wiley Interdisciplinary Reviews series combines features of encyclopedic reference works and review journals in innovative online format. They are designed to promote cross-disciplinary research ethos while maintaining the highest scientific and presentational standards, but should be viewed first and foremost as evolving online databases of cutting-edge reviews. | encyclopedic reference works, review journals, databases of reviews, | nif-0000-10668 | http://www.wiley.com/WileyCDA/Section/id-370078.html | SCR_000392 | SciCrunch Registry | Wiley Interdisciplinary Reviews series | 2026-10-31 12:12:37 | 0 | ||||||||
|
Time Event Ontology Resource Report Resource Website |
Time Event Ontology (RRID:SCR_000310) | TEO | controlled vocabulary, data or information resource, ontology | Ontology for representing events, time, and their relationships. | owl | is listed by: BioPortal | nlx_157610 | SCR_000310 | SciCrunch Registry | 2026-10-31 12:12:36 | 0 | |||||||||
|
Variation Ontology Resource Report Resource Website |
Variation Ontology (RRID:SCR_000311) | VARIO | controlled vocabulary, data or information resource, ontology | An ontology for standardized, systematic description of effects, consequences and mechanisms of variations. | obo | is listed by: BioPortal | nlx_157622 | SCR_000311 | SciCrunch Registry | 2026-10-31 12:12:36 | 0 | |||||||||
|
RStudio Resource Report Resource Website 1000+ mentions |
RStudio (RRID:SCR_000432) | RStudio | software resource | Open source and enterprise ready professional software for R statistical computing environment. Integrated development environment for R. Includes console, syntax highlighting editor that supports direct code execution, as well as tools for plotting, history, debugging and workspace management. Available in open source and commercial editions and runs on desktop Windows, Mac, and Linux or in browser connected to RStudio Server or RStudio Server Pro (Debian/Ubuntu, RedHat/CentOS, and SUSE Linux). | R, statistical, computing, environment |
is used by: PlotsOfData is listed by: Debian is listed by: SoftCite is related to: rSPRITE is related to: shinyCircoss is parent organization of: Shiny is required by: circlncRNAnet |
Restricted | SciRes_000113 | https://sources.debian.org/src/rstudio/, https://posit.co/download/rstudio-desktop/ | http://www.rstudio.com/ | SCR_000432 | SciCrunch Registry | 2026-10-31 12:12:38 | 1191 | ||||||
|
Semantic DICOM Ontology Resource Report Resource Website |
Semantic DICOM Ontology (RRID:SCR_000309) | SEDI | controlled vocabulary, data or information resource, ontology | An ontology for DICOM as used in the SeDI project. | owl | is listed by: BioPortal | nlx_157583 | SCR_000309 | SciCrunch Registry | 2026-10-31 12:12:36 | 0 | |||||||||
|
QUALIFIER Resource Report Resource Website |
QUALIFIER (RRID:SCR_000389) | software resource | Software that provides quality control and quality assessment tools for gated flow cytometry data. | software package, mac os x, unix/linux, windows, r, cell based assay, flow cytometry, infrastructure |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:23020243 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_05618 | SCR_000389 | SciCrunch Registry | QUALIFIER - Quality Control of Gated Flow Cytometry Experiments | 2026-10-31 12:12:37 | 0 | |||||||
|
Scribe Resource Report Resource Website |
Scribe (RRID:SCR_000423) | Scribe | software resource | Scribe encodes papers to populate the BrainMap Database | magnetic resonance, pet, spect |
is used by: brainmap.org is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) |
Free, Freely available | nlx_155958 | SCR_000423 | SciCrunch Registry | 2026-10-31 12:12:38 | 0 | ||||||||
|
GraphPad Resource Report Resource Website 1000+ mentions |
GraphPad (RRID:SCR_000306) | commercial organization | A commercial graphing software company that offers scientific software for statistical analyses, curve fitting and data analysis. It offers four programs: Prism, InStat, StatMate and QuickCalcs. | company, data, graph, scientific, statistical, analysis, curve, fitting |
is listed by: SoftCite is parent organization of: GraphPad Prism |
Restricted | nlx_156835 | SCR_000306 | SciCrunch Registry | 2026-10-31 12:12:36 | 1320 | |||||||||
|
Altmetric Bookmarklet Resource Report Resource Website |
Altmetric Bookmarklet (RRID:SCR_000427) | Altmetric Bookmarklet | software resource | Free bookmarklet for Chrome, Firefox and Safari that allows you to instantly get article level metrics for any recent paper. Simply drag the button below to your bookmarks bar, navigate to a journal article page, and hit Altmetric it! | altmetrics, chrome, firefox, safari | is listed by: FORCE11 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156030 | http://www.force11.org/node/4720 | SCR_000427 | SciCrunch Registry | The Altmetric Bookmarklet | 2026-10-31 12:12:38 | 0 | ||||||
|
Washington University in St. Louis; Missouri; USA Resource Report Resource Website 1+ mentions |
Washington University in St. Louis; Missouri; USA (RRID:SCR_000343) | WUSTL, WashU | university | Private research university in Greater St. Louis with its main campus mostly in unincorporated St. Louis County, Missouri and Clayton, Missouri. | missouri, undergraduate, postgraduate, graduate, university |
uses: Scizzle uses: Research Accelerator is affiliated with: Diabetes Research Centers is related to: Alzheimers Disease Genetics Consortium is related to: Clinical and Translational Science Awards Consortium is related to: Urinary Stone Disease Research Network is related to: Connectome Workbench is parent organization of: Washington University School of Medicine Knight Alzheimers Disease Research Center is parent organization of: DicomBrowser is parent organization of: Washington University School of Medicine Genome Technology Access Center Core Facility is parent organization of: DiMO is parent organization of: Washington University Neuromuscular Disease Center is parent organization of: Surface-Based Atlases is parent organization of: Neurologic AIDS Research Consortium is parent organization of: SomaticSniper is parent organization of: SPLINTER is parent organization of: DGIdb is parent organization of: Bayesian Analysis of Common NMR Problems is parent organization of: Genome Center BLAST Server is parent organization of: Washington University in St. Louis Neuroscience is parent organization of: Nematode.net is parent organization of: Human Gut Microbiome Initiative is parent organization of: Adaptive Poisson-Boltzmann Solver is parent organization of: Human Connectome Coordination Facility is parent organization of: MuSiC is parent organization of: Washington University School of Medicine in St. Louis; Missouri; USA is parent organization of: WUSTL Hybridoma Center is parent organization of: WUSTL Mouse Cardiovascular Phenotyping Core is parent organization of: WUSTL NNIN - Nano Research Facility is parent organization of: WUSTL Biology Department Imaging Facility is parent organization of: WUSTL Histology Core is parent organization of: Washington University in St. Louis School of Medicine Division of Biology and Biomedical Sciences is parent organization of: Collaborative Study on the Genetics of Alcoholism is parent organization of: Stroke Trials Registry is parent organization of: Neurology Image Library from The Internet Stroke Center is parent organization of: WormBase is parent organization of: ConnectomeDB is parent organization of: NIMH Repository and Genomics Resources is parent organization of: GLMdenoise: a fast, automated technique for denoising task-based fMRI data is parent organization of: Washington University Center for Diabetes Translation Research Administrative Core in Diabetes Research Core is parent organization of: Washington University Center for Diabetes Translation Research Dissemination and Implementation in Diabetes Research Core Facility is parent organization of: Washington University Center for Diabetes Translation Research Solutions to Diabetes in Black Americans Core is parent organization of: Washington University Center for Diabetes Translation Research Health Informatics in Diabetes Research Core is parent organization of: Washington University Center for Diabetes Translation Research is parent organization of: Washington University Center for Diabetes Translation Research Policy and Systems Science Analysis in Diabetes Research Core is parent organization of: Washington University Center for Diabetes Translation Research Health Communication and Health Literacy Core Facility is parent organization of: Washington University Center for Diabetes Translation Research Research Partnerships with American Indian/Alaskan Native Communities Core is parent organization of: Washington University School of Medicine Genome Technology Access Center Core Facility is parent organization of: Rodent Arena Tracker project is parent organization of: SnackClock is parent organization of: Feeding Experimentation Device project is parent organization of: Washington University in St. Louis Human Cells, Tissues, and Organoids Core Facility is parent organization of: Washington University School of Medicine Mass Spectrometry Technology Access Center Core Facility is parent organization of: Washington University in St. Louis Washington University Center for Cellular Imaging Core Facility is parent organization of: Washington University Digestive Diseases Research Core Center Biobank Core is parent organization of: Washington University School of Medicine Diabetes Research Center Translational Diagnostics Core is parent organization of: Washington University School of Medicine Diabetes Research Center Cell and Tissue Imaging Core is parent organization of: Washington University School of Medicine Diabetes Research Center Mass Spectrometry Core has organization facet: VarScan |
SCR_017964, Wikidata:Q777403, Crossref funder ID:100007268, ISNI:0000 0001 2355 7002, grid.4367.6, nlx_47548 | https://ror.org/01yc7t268 | SCR_000343 | SciCrunch Registry | Washington University | 2026-10-31 12:12:36 | 1 | |||||||
|
University of Zaragoza; Zaragoza; Spain Resource Report Resource Website |
University of Zaragoza; Zaragoza; Spain (RRID:SCR_000341) | UZ | university | An undergraduate and postgraduate university which is located in Zaragoza, Spain. | zaragoza, university, undergraduate, postgraduate | is parent organization of: BCIZaragoza - YouTube | nlx_144537 | SCR_000341 | SciCrunch Registry | University of Zaragoza, Universidad de Zaragoza | 2026-10-31 12:12:36 | 0 | ||||||||
|
University of Zurich; Zurich; Switzerland Resource Report Resource Website 1+ mentions |
University of Zurich; Zurich; Switzerland (RRID:SCR_000342) | UZH | university | University located in Zürich, Switzerland was founded in 1833. Has faculties in Philosophy, Human Medicine, Economic Sciences, Law, Mathematics and Natural Sciences, Theology and Veterinary Medicine. Offers the widest range of subjects and courses of any Swiss higher education institution. As of October 2018, 23 Nobel laureates and 1 Turing Award winner have been affiliated with University of Zurich as alumni, faculty or researchers. | immunology, genetics, neuroscience, structural biology, medicine, master, bachelor, phd |
is parent organization of: Connectome Wiki is parent organization of: Swiss Institute of Allergy and Asthma Research is parent organization of: MLTreeMap is parent organization of: University of Zurich SCRM - Cell-and Tissue Biobank is parent organization of: HPC-CLUST is parent organization of: Segmented ssTEM stack of neural tissue is parent organization of: Low Resolution Electromagnetic Tomography is parent organization of: Institute of Neuroinformatics is parent organization of: Institute for Neuroinformatics: Cortex 3D is parent organization of: TrakEM2 is parent organization of: B-Fabric is parent organization of: MINAS - Metal Ions in Nucleic AcidS is parent organization of: sLORETA is parent organization of: exact Low Resolution Electromagnetic Tomography is parent organization of: Grid Enabled Molecular Science Through Online Networked Environments is parent organization of: CATALYSTLite is parent organization of: imctools is parent organization of: Hierarchical Unsupervised Generative Embedding toolbox is parent organization of: PAXdb is parent organization of: University of Zurich Center for Microscopy and Image Analysis Core Facility is parent organization of: Progenetix |
nlx_15354 | SCR_000342 | SciCrunch Registry | University of Zurich, Universitat Zurich | 2026-10-31 12:12:36 | 1 | ||||||||
|
rtd Resource Report Resource Website |
rtd (RRID:SCR_000337) | data analysis software, data processing software, software application, software resource | Reference-free ddRADseq analysis software tools. The pipeline script generates reference-sorted, indexed BAM from uniqued reads from radtag sequencing lanes. | standalone software | is listed by: OMICtools | PMID:22675423 | Free, Available for download, Freely available | OMICS_03723 | SCR_000337 | SciCrunch Registry | 2026-10-31 12:12:36 | 0 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the dkNET Resources search. From here you can search through a compilation of resources used by dkNET and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that dkNET has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on dkNET then you can log in from here to get additional features in dkNET such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into dkNET you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
Email: info_at_ dknet.org
