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http://cran.r-project.org/web/packages/MetaQC/

Software for quality control and diagnosis for microarray meta-analysis. Quantitative quality control measures include: (1) internal homogeneity of co-expression structure among studies (internal quality control; IQC); (2) external consistency of co-expression structure correlating with pathway database (external quality control; EQC); (3) accuracy of differentially expressed gene detection (accuracy quality control; AQCg) or pathway identification (AQCp); (4) consistency of differential expression ranking in genes (consistency quality control; CQCg) or pathways (CQCp). For each quality control index, the p-values from statistical hypothesis testing are minus log transformed and PCA biplots were applied to assist visualization and decision. Results generate systematic suggestions to exclude problematic studies in microarray meta-analysis and potentially can be extended to GWAS or other types of genomic meta-analysis. The identified problematic studies can be scrutinized to identify technical and biological causes (e.g. sample size, platform, tissue collection, preprocessing etc) of their bad quality or irreproducibility for final inclusion / exclusion decision.

Proper citation: MetaQC (RRID:SCR_006000) Copy   

•   Source: SciCrunch Registry

https://www.fishersci.com/us/en/brands/I9C8M2YI/quantum-dot-corporation.html

THIS RESOURCE IS NO LONGER IN SERVICE. Documented September 15, 2017.\\\\\\
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An Antibody supplier

Proper citation: Quantum Dot Corporation (RRID:SCR_005941) Copy   

•   Source: SciCrunch Registry

http://www.proquest.com/en-US/products/dissertations/

ProQuest Dissertation Publishing has been publishing dissertations and theses since 1938. In that time, we have published over 2 million graduate works from graduate schools around the world. We have over 700 active university publishing partners, and publish more than 70,000 new graduate works each year. In addition to publishing, we provide access to graduate works for thousands of libraries around the world. Based on your interests, you should find the information you need below: * Authors - Information for authors on why and how to publish their graduate work with us. * Grad Schools & Libraries - Learn about the benefits of publishing, and why to submit online. * Researchers - We can help you find the dissertation or thesis you need.

Proper citation: ProQuest Dissertation Publishing (RRID:SCR_006075) Copy   

•   Source: SciCrunch Registry

http://www.wf4ever-project.org/

Project to addresses challenges associated with the preservation of scientific experiments in data-intensive science, including: * The definition of models to describe, in a standard way, scientific experiments by means of workflow-centric Research Objects, which comprise scientific workflows, the provenance of their executions, interconnections between workflows and related resources (e.g., datasets, publications, etc.), and social aspects related to such scientific experiments. * The collection of best practices for the creation and management of Research Objects. * The analysis and management of decay in scientific workflows. To address these challenges they are creating an architecture and tooling for the access, manipulation, sharing, reuse and evolution of Research Objects in a range of disciplines. This will result into the next generation RO-enabled myExperiment.

Proper citation: Workflow4Ever (RRID:SCR_005939) Copy   

•   Source: SciCrunch Registry

http://www.unt.edu/

Public research university in Denton, Texas.

Proper citation: University of North Texas; Texas; USA (RRID:SCR_005935) Copy   

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https://www.reprocell.com/en/

An Antibody supplier

Proper citation: ReproCELL Incorporated (RRID:SCR_005973) Copy   

•   Source: SciCrunch Registry

http://www.nitrc.org/projects/bash-rs-fcmri

THIS RESOURCE IS NO LONGER IN SERVICE, documented July 23, 2015. Of note: most functions have been integrated in 1000 Functional Connectomes Project (www.nitrc.org/projects/fcon_1000). This package is not updated, thus please visit 1000 Functional Connectomes Project site and download relevant bash scripts. BASH Scripts for a resting-state functional MRI study. The functions include seed-based correlation analysis, amplitude analysis and independent component analysis. Note: this tool is just a plug-in for FSL, AFNI and FreeSurfer. Thus, you need have them before you use BASH4RfMRI.

Proper citation: BASH4RfMRI (RRID:SCR_005970) Copy   

•   Source: SciCrunch Registry

http://www.ddcf.org/

The mission of the Doris Duke Charitable Foundation is to improve the quality of people''s lives through grants supporting the performing arts, environmental conservation, medical research and the prevention of child abuse, and through preservation of the cultural and environmental legacy of Doris Duke''s properties. Established in 1996, the foundation supports four national grant-making programs. It also supports three properties that were owned by Doris Duke in Hillsborough, New Jersey; Honolulu, Hawaii; and Newport, Rhode Island. The foundation is headquartered in New York and is governed by a board of 12 Trustees. DDCF''s activities are guided by the will of Doris Duke, who endowed the foundation with financial assets that totaled approximately $1.6 billion as of December 31, 2010. The foundation regularly evaluates and modifies its allocation of resources from the endowment to support the programs and properties and to respond to fluctuations in portfolio returns. The foundation awarded its first grants in 1997. As of December 31, 2011, the foundation has awarded grants totaling more than $1 billion. DDCF awards grants in four core program areas: * The Arts Program supports performing artists with the creation and public performance of their work. * The Environment Program supports efforts that enable communities to protect and manage wildlife habitat and create efficient built environments. * The Medical Research Program seeks to contribute to the prevention and cure of disease by supporting clinical research. * The Child Abuse Prevention Program seeks to protect children from abuse and neglect in order to promote their healthy development. In the fall of 2007, DDCF also launched the African Health Initiative, with the goal of strengthening health systems in sub-Saharan Africa. The Building Bridges Program, which seeks to increase public understanding of Islamic cultures through media and the arts, is funded through the Doris Duke Foundation for Islamic Art and is headquartered in DDCF''s offices in New York. The Properties In her will, Doris Duke requested that several operating foundations manage the properties listed below. She also expressed her wishes that the properties be opened for public visitation and used for educational programs. The operating foundations receive funding from the Doris Duke Charitable Foundation. * The Duke Farms Foundation manages a 2,700-acre property in Hillsborough, New Jersey, which is known as Duke Farms and has a mission of environmental stewardship. * The Doris Duke Foundation for Islamic Art manages Doris Duke''s home in Honolulu, Hawaii, which is known as Shangri La and serves as a center for the study of Islamic art and cultures. * The Newport Restoration Foundation preserves historic houses in Newport, Rhode Island, and operates Doris Duke''s home in Newport known as Rough Point, which is also a public museum.

Proper citation: Doris Duke Charitable Foundation (RRID:SCR_006012) Copy   

•   Source: SciCrunch Registry

http://novabiologics.com/

An Antibody supplier

Proper citation: NOVA Biologics (RRID:SCR_005985) Copy   

•   Source: SciCrunch Registry

http://www.milkeninstitute.org/

Nonprofit, nonpartisan think tank that helps people build meaningful lives. Center for Regional Economics and California Center.

Proper citation: Milken Institute; California; USA (RRID:SCR_011243) Copy   

•   Source: SciCrunch Registry

http://www.fu-berlin.de/en/

Public research university in Berlin, Germany. The Free University of Berlin is one of eleven elite German research universities in the German Universities Excellence Initiative.

Proper citation: Free University of Berlin; Berlin; Germany (RRID:SCR_011246) Copy   

•   Source: SciCrunch Registry

http://www.cnrs.fr/index.php

A government-funded research organization with the following missions: * To evaluate and carry out all research capable of advancing knowledge and bringing social, cultural, and economic benefits for society. * To contribute to the application and promotion of research results. * To develop scientific information. * To support research training. * To participate in the analysis of the national and international scientific climate and its potential for evolution in order to develop a national policy. As the largest fundamental research organization in Europe, CNRS carried out research in all fields of knowledge, through its seven institutes: * Institute of Biological Sciences (INSB) * Institute of Chemistry (INC) * Institute of Ecology and Environment (INEE) * Institute for Humanities and Social Sciences (INSHS) * Institute for Computer Sciences (INS2I) * Institute for Engineering and Systems Sciences (INSIS) * Institute of Physics (INP) and three national institutes: * National Institute for Mathematical Sciences (INSMI) * National Institute of Nuclear and Particle Physics (IN2P3) * National Institute for Earth Sciences and Astronomy (INSU) CNRS''s annual budget represents a quarter of French public spending on civilian research. This funding comes from various sources: * Government and public funding; * CNRS funds, primarily from industrial and EU research contracts and royalties on patents, licenses, and services provided.

Proper citation: French National Center for Scientific Research (RRID:SCR_011247) Copy   

•   Source: SciCrunch Registry

http://www.frsq.gouv.qc.ca/en/index.shtml

The FRQS (Fonds de recherche du Québec - Santé) is a non-profit funding agency created under the Act Respecting the Ministère du Développement économique, de l'Innovation et de l'Exportation (L.R.Q., c. M-30.01). We report to the Minister in charge of Québec's department for economic development, innovation and export trade (ministère du Développement économique, de l'Innovation et de l'Exportation) and our mandate is to implement government strategy with respect to human health research as presented in the Québec Research and Innovation Strategy. The FRQS was established in 1964 by Québec's health department under the name Conseil de recherches médicales. A pioneer in both Québec and Canada, the FRQS advised the health minister in matters of medical research. Forty years later, the FRQS plays a leading role in planning and coordinating the development of health research in Québec. The FRQS allocates $100 million annually in awards and grants for public-sector research into human health carried out today in universities and hospital-based research centers. We fund projects using any of the recognized methodologies (basic, clinical, epidemiological, public health, health services and the social determinants of health). To fulfill our mission and maximize the economic and health benefits of scientific investigation, we invest in: *top-performing research investigators and students *research centers, groups and networks *excellence, innovation and the dissemination of knowledge *social responsibility and ethical practices *synergy and partnership, THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: FRQS (RRID:SCR_011253) Copy   

•   Source: SciCrunch Registry

http://english.fafu.edu.cn/

Fujian Agriculture and Forestry University is a leading higher education institution in Fujian Province, jointly supported by the Ministry of Agriculture, the State Forestry Administration and the Fujian Provincial Government in China.

Proper citation: Fujian Agriculture and Forestry University; Fujian; China (RRID:SCR_011254) Copy   

•   Source: SciCrunch Registry

http://www.gachon.ac.kr/english/

Academic institute located in South Korea. The current structure of Gachon university is the result of a merger between four existing universities.

Proper citation: Gachon University; Seongnam; South Korea (RRID:SCR_011255) Copy   

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http://www.gwu.edu/

Private research university in Washington, D.C. It was chartered in 1821 by an act of the United States Congress.

Proper citation: George Washington University; Washington D.C.; USA (RRID:SCR_011214) Copy   

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http://erc.europa.eu/

Independent body that funds investigator-driven frontier research in the European Union (EU). It is part of the Seventh Research Framework Programme (FP7).

Proper citation: European Research Council (RRID:SCR_011216) Copy   

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http://www.gifu-u.ac.jp/en/

National university in the city of Gifu, Gifu Prefecture, Japan. It is sometimes abbreviated as Gidai or Gifudai. The Tokai National Higher Education and Research System established by integrating with Nagoya University in April 2020, both are major universities in Central Japan.

Proper citation: Gifu University; Gifu; Japan (RRID:SCR_011217) Copy   

•   Source: SciCrunch Registry

http://www.esf.org/

The establishment of the European Science Foundation (ESF) in Strasbourg in 1974 was one of the earliest milestones on the road to achieving real cooperation in European research. The ESF began life with a membership of 42 academies and research councils in 15 countries; in 2011 it counts 78 Member Organizations (MOs), including research funding organizations, research performing organizations, academies and learned societies, in 30 countries. As an independent, non-governmental organization dedicated to pan-European scientific networking and collaboration, the ESF has had a key role to play in mediating between a multitude of heterogeneous research cultures and agencies. The ESF hosts an array of instruments to accommodate various types and levels of international collaboration, within Europe and beyond. The ESF''s unique characteristic in this area is its responsiveness to the scientific community, in contrast with the more targeted approaches taken by the European Commission. Many of the instruments operated by the ESF, e.g. Exploratory Workshops, EUROCORES (European Collaborative Research scheme), Research Networking Programmes (RNPs) and ESF Research Conferences, are designed to respond to needs articulated by the research community. Open calls for proposals are published on an annual basis, so that the themes for programmes, networks and workshops are gathered from the research community, in line with the ESF''s bottom-up principles. This is particularly welcome in research areas which might not otherwise be prioritized for funding on an international level. In recent years, the ESF''s profile has shifted from being mainly a facilitator of collaborative research and networking to also providing a platform for Member Organizations to develop joint strategic operations and synergy among themselves. By influencing the strategic agendas of MOs in this way, greater leverage over a much larger European budget and agenda is achieved. In other words, the ESF maximizes the impact of its support to the research community by combining bottom-up and topdown approaches to scientific cooperation.

Proper citation: European Science Foundation (RRID:SCR_011218) Copy   

•   Source: SciCrunch Registry

http://europa.eu/index_en.htm

The European Union is a unique economic and political partnership between 27 European countries. It has delivered half a century of peace, stability, and prosperity, helped raise living standards, launched a single European currency, and is progressively building a single Europe-wide market in which people, goods, services, and capital move among Member States as freely as within one country. The EU provides funding and grants for a broad range of projects and programs. The EU was created in the aftermath of the second world war. The first steps were to foster economic cooperation: countries that trade with one another are economically interdependent and will thus avoid conflict. Since then, the union has developed into a huge single market with the euro as its common currency. What began as a purely economic union has evolved into an organization spanning all areas, from development aid to environmental policy.

Proper citation: European Union (RRID:SCR_011219) Copy   

•   Source: SciCrunch Registry